EsuBft4245_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft4245_2a-0001
Unique Name	EsuBft4245_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:1349464..1353799 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	67593.Physo133219
ProteomeId	EsuBft4245_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	401
Hectar predicted targeting category	other localisation
Evalue	9.65e-11
EggNOG OGs	2EEVD@1\|root,2SK6B@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	protein). Source PGD
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft4245_2a	EsuBft4245_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 1349464..1353799 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4245_2a-0001-exon	agat-exon-93816	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 1349464..1351613 -
EsuBft4245_2a-0001-exon	EsuBft4245_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 1351936..1353799 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4245_2a-0001-exon	agat-three_prime_utr-15514	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 1349464..1351613 -
EsuBft4245_2a-0001-exon	agat-three_prime_utr-15515	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 1351936..1353562 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4245_2a-0001-cds	EsuBft4245_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 1353563..1353799 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4245_2a-0001	EsuBft4245_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 1353563..1353799 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:1349464..1353799-
coding sequence from alignment at Scaffold_630:1349464..1353799-

spliced messenger RNA

>EsuBft4245_2a-0001 ID=EsuBft4245_2a-0001|Name=EsuBft4245_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4014bp|location=Sequence derived from alignment at Scaffold_630:1349464..1353799- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGGAGTTCCACGGTGCCTGTGCGGCGAAGCACTACCAGCTTTCCT
CGAGGAGCTCACTAGCCTACGAGTAAGATGGCCCGACAAGAGCATTCTCG
CAGCCAAGGCTGATGTCACCTCTGCGTTCAGAAATGTGAGGATGTCACCA
GATCATGCACACAACTTTTGCTACGTGATAGGAGACGTGCTAGTAGCGGA
TCTACGGCTGACCTTTGGCTGGGCAGCGTCACCATGATTGTGGGGTGTGT
TAGCCTCCGCTGCAGAGCACTCGCACCGCAACACGTCCCTCGCGAACGCT
CGACTACTACCAGAAGGAATCGCAATGATGTCTCACGTGAAAATAAAACC
TCCTTGGGAAAAAGGCACCCCATCCTCAATACCCTCGTAGGCAGACNTCA
TAGACACGCATGATGGCAGAATTGCAACTACACCGGAACGGGTAAGTAAG
CGTGATTCGGAACGTACTAGAGGCGGATTGGCCCCACGATAGGAAGAAGG
CCAGTGTTCAAGAAGTCCTCAGCATTGCAGGAAAACTGTGGAACCTCACT
TATGTTATCAGGGCCGGTAGGTACTTCGTGTGGCAACTGCTCCGCCTATC
GGGTCTGCATACGCAAGCCAGTCGACACACACGGTCACGACGACTAGTGG
ACTTGGGTAGAGAGTTCCACGGCGATATCGCCTTCTGGAAGTGGGCCCTC
AATCAGCCACTGGCACTTCGAGGGGAGTCCCTCAGCGCATCGTTCTTACT
CCACGTAAAACGAGCACCCTCACGCCTTTACCTCTCAGACGCTAGCTTCA
CAGCGATTGGCGGCTACTGTCCCGAACTAAAGACTTTCTGGAGATACACG
ATCGAATCATCGTTGTCTGCGGAGCTCAAGCGCAAGGCGCAAGAGAAGGA
GACGTCAGACATTACGATCAATCTGTTAGAACTCGCGGGCATGTTCATGA
CGGCGTGGGTAGTCCAAATGATCTTGAAAGACAGACCTGTAGAAGAAGGG
CAGTCGGTGTTGATGCGTGGAGACAACGTGTCGGCCGTCAGTTGGACTAA
CAGGTGTGGGGGATCGCGTGACAGGCGCGCTAGCCTCATAATGAGACTCA
TGGGTAGGATGGAAATTTCTTGCGGCTGGTGCCACGTGGCTAAGCACATC
CCTGGTCGAATGAACACACTTGCGGACGGGATCTCACGTTGGGAAGAAAA
TGAGATCGCCGCCAACGTGAAAATGCTCACAAAAGACTCAGGGTGGACAC
AGCAGGATATTGGAGTAGGGGGACGAGCGTTGCTCAACATTATCCTACAA
AAGAAATTGCCGAAAGAAAGTCTGGACGACTCGGTATGGGACATTATGGT
CGAAGGAACAGAAAATATCTGACACGGCAGAGGGGGCGGTCGGACACCGC
TCTGTGTTCCGGACGATCAACGAATTATCATACGAAATGAGATAGCGAGA
AGCTGGAGCGGTGGACACGCCTCACATTCACTGTTTCATGACGCCTTGAT
GAAATGGATAGCCGGGGGAGGCAGAGTTGGTTTGGACGACCAAGTTTTCC
TGTTCTCCCTCCAAGCCAAGTCGGGGCTATCCACGGGTTCGGCATGAACT
TGTCGTACCTTGGGAAGGAACCTCGAAATGTGCGCATTCCTCACGCTGTG
TATACCCGATGATTGGATATCAGGAACTCAGGGAAAGGATGGCCGGGGAG
GCACGAGCGCCGAGGGGGAGCGGTTGGTCAACGCACTCACCTTCGGGTCT
TTGGGAAGTGGTACCAACAAGGTGTATCAAAGGATGTGGAACACGTGGAA
GGAGGCTCGAGCAGGGGCGGGTTCGGGCCCGTGGCTCCGCGAGAGCGATG
GGGTGGAAAGTGCGCTTCAGAAATCTGGGCGGACGACTCGGGGCTCGTGC
ACTCGGATTTTTGTCTGACAAGAGGAGACCTGGGTTTCTTTTGCGGTCCG
GTAAGGGTTGCATGGGCAGACCGGAGGCAGGCTAGCCAAGTGGAAGTCAC
GTTCAGAGCGTCAAAAGAAGATCAAAAACGTTTGGGAGCAACCGTCACAA
GATCGGGAGTAGCGTTGAAGGTGTTACTCGATCTGTTAGATCTGCACCCC
GAGCTTGGGAGTCATGCGCCGTTGATGCAATCGTGGGCACAAGACAAGTG
GAAGGTTATTTCGAGGGCAGAGGCATCGAGACACCTCAGGTTACTCGTGA
GTGCGGCGGGTAGAGACCCACAGAAGTATGCGTTGCATTCAGGAAGGATC
GGGGGGGCCACGCACCTAGCAAGTATGGGGGCGTCGGTAATTCAGATCCA
GAGAGCCGGAAGGTGGAAATCATCGGCTTTCATGGTGTACGTTAGGGCGG
GGGGTGAAGGAGCAAAGTTTGTGTCTCAGGCCCTTACGGAACCCGAGGAG
TGACCAGGGAGCGGTTCGGAGGAGTAGGTCATCGGACATGCCTAATGGAG
TAAGATATGTTGAGGCCAGAGGCCGAAACAATAGTAATGATAGTAGGGCA
ATCTTGGGAAGTTTGCAACGGGTTAGTCCGATAAGTAAACGTTGTGAGCA
AGACGGCATTTTACCTGCGCTCCCAATTTGTTTCATGTGTCTTGGTTTTT
CTTTGGTTGCCTGCAGAAAAAATAATCCAGAATTCTTGAGCAAACATAAA
CGGGAAGATTCAGTACGTATTTGAATCTGTGGTTTGTGGAGGCGTGTTGG
AATTCGGAAAAGCGGGGATCGAAGAAAAGTAGAGACAGCCCTGGTGGCAG
AAAGTTTTTGTGCTCTCGCTGGGCGAGAGACAAGCAGCAAGTGCATTTGA
GAGAAGGAGAGGAGTAGCAGAGATAGCAGCTTTGAGGAGCAGCAAATACA
GAGTGCCGCCTAGGATTTGATCGATTTTCCCGCCCACCCACACCTATCGC
TCAAGAGAGGGGGGAGCATGGGGGGGTCTAGTCGGTCGACGACTAGGAGG
TACCGTGTAGGTAGTTTATTATGAGTAAGATATGTTGAGGCCAGAGGCCG
ACACAATAGTAATGATAGTAGGGCAATCTTGGGAAATTTGCAACGGGTTA
GTCCGATAAGTAAACGTTGTGAGCAAGACGGCATTTTACCTGCGCTCCCA
ATTTGTTTCATGTGTCTTGGTTTTTCTTTGGTTGCCTGCAGAAAAAAAAA
TCCAGAATTCTTGAGCAAACAATAAAATACACTGACAAAGTGTTGGACTC
TACATAGTCTACATGCGCTGAAAAAAAGTGTAGTACACGTCTCACCACGA
AAAATGGGGGGACTGTCGCCATAATAAATAGGACGAAAACACACATCAGG
GTGTCGCTTTCGTCTGGAATACATGTATAGACACATCAAGACCGGAGATG
TATGGCACGTTGTTGTGTACGCAGAGACTCGTTCGTACACAACAATGCAG
CAGCAGCAAGCAGTGGATGGATGCCGTGGTTATGTCTCGATCAAGAAGAC
CGGAGATAAATAGTCTATGACACATTGTTGTGTAGGAAGAGGATCGTACA
GTAATGCAGCAGCAGCAAGCAGCGGATGCCGTGGGACCTCAGATTAAACA
ACGACAATACTTCCTTGACCTCGACCTCTCGTGAGTACGTGGGAGAGACG
AGGAACTGNGTCTATGACACATTGTTGTGTAGGAAGAGGATCGTACAGTA
ATGCAGCAGCAGCAAGCAGCGGATGCCGTGGGACCTCAGATTAAACAACG
ACAATACTTCCTTGACCTCGACCTCTCGTGAGTACGTGGGAGAGACGAGG
AACTGCGGACTTGCCACAGGAGATGGGGAAAGATAAAGAGAGTGGTGGTA
CACGCAGCATGATGAACGCTGTCCTAAGATGGCTGGTGGTGAAGTAGCAC
GCGCCTTGCGCGAGGACCGCGGGGTGTTTCTACTTCATCGCTCATATTCT
GCCGATGCCAGTCGATCGTTCAGGTACGAGTGCCGAGATTACCCATGAGA
GACTTGGTGGGTTGAGGAGCGAGATCTACTCGCAGGAGCGAGATCTACTT
CAAACAAGAGTTCC

protein sequence of EsuBft4245_2a-0001

>EsuBft4245_2 ID=EsuBft4245_2|Name=EsuBft4245_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=78bp
MPGVPRCLCGEALPAFLEELTSLRVRWPDKSILAAKADVTSAFRNVRMSP
DHAHNFCYVIGDVLVADLRLTFGWAASP

mRNA from alignment at Scaffold_630:1349464..1353799-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft4245_2a-0001 ID=EsuBft4245_2a-0001|Name=EsuBft4245_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4336bp|location=Sequence derived from alignment at Scaffold_630:1349464..1353799- (Ectocarpus subulatus male Bft15b)
ATGCCTGGAGTTCCACGGTGCCTGTGCGGCGAAGCACTACCAGCTTTCCT
CGAGGAGCTCACTAGCCTACGAGTAAGATGGCCCGACAAGAGCATTCTCG
CAGCCAAGGCTGATGTCACCTCTGCGTTCAGAAATGTGAGGATGTCACCA
GATCATGCACACAACTTTTGCTACGTGATAGGAGACGTGCTAGTAGCGGA
TCTACGGCTGACCTTTGGCTGGGCAGCGTCACCATGATTGTGGGGTGTGT
TAGCCTCCGCTGCAGAGCACTCGCACCGCAACACGTCCCTCGCGAACGCT
CGACTACTACCAGAAGGAATCGCAATGATGTCTCACGTGAAAATAAAACC
TCCTTGGGAAAAAGGCACCCCATCCTCAATACCCTCGTAGGCAGACNTCA
TAGACACGCATGATGGCAGAATTGCAACTACACCGGAACGGGTAAGTAAG
CGTGATTCGGAACGTACTAGAGGCGGATTGGCCCCACGATAGGAAGAAGG
CCAGTGTTCAAGAAGTCCTCAGCATTGCAGGAAAACTGTGGAACCTCACT
TATGTTATCAGGGCCGGTAGGTACTTCGTGTGGCAACTGCTCCGCCTATC
GGGTCTGCATACGCAAGCCAGTCGACACACACGGTCACGACGACTAGTGG
ACTTGGGTAGAGAGTTCCACGGCGATATCGCCTTCTGGAAGTGGGCCCTC
AATCAGCCACTGGCACTTCGAGGGGAGTCCCTCAGCGCATCGTTCTTACT
CCACGTAAAACGAGCACCCTCACGCCTTTACCTCTCAGACGCTAGCTTCA
CAGCGATTGGCGGCTACTGTCCCGAACTAAAGACTTTCTGGAGATACACG
ATCGAATCATCGTTGTCTGCGGAGCTCAAGCGCAAGGCGCAAGAGAAGGA
GACGTCAGACATTACGATCAATCTGTTAGAACTCGCGGGCATGTTCATGA
CGGCGTGGGTAGTCCAAATGATCTTGAAAGACAGACCTGTAGAAGAAGGG
CAGTCGGTGTTGATGCGTGGAGACAACGTGTCGGCCGTCAGTTGGACTAA
CAGGTGTGGGGGATCGCGTGACAGGCGCGCTAGCCTCATAATGAGACTCA
TGGGTAGGATGGAAATTTCTTGCGGCTGGTGCCACGTGGCTAAGCACATC
CCTGGTCGAATGAACACACTTGCGGACGGGATCTCACGTTGGGAAGAAAA
TGAGATCGCCGCCAACGTGAAAATGCTCACAAAAGACTCAGGGTGGACAC
AGCAGGATATTGGAGTAGGGGGACGAGCGTTGCTCAACATTATCCTACAA
AAGAAATTGCCGAAAGAAAGTCTGGACGACTCGGTATGGGACATTATGGT
CGAAGGAACAGAAAATATCTGACACGGCAGAGGGGGCGGTCGGACACCGC
TCTGTGTTCCGGACGATCAACGAATTATCATACGAAATGAGATAGCGAGA
AGCTGGAGCGGTGGACACGCCTCACATTCACTGTTTCATGACGCCTTGAT
GAAATGGATAGCCGGGGGAGGCAGAGTTGGTTTGGACGACCAAGTTTTCC
TGTTCTCCCTCCAAGCCAAGTCGGGGCTATCCACGGGTTCGGCATGAACT
TGTCGTACCTTGGGAAGGAACCTCGAAATGTGCGCATTCCTCACGCTGTG
TATACCCGATGATTGGATATCAGGAACTCAGGGAAAGGATGGCCGGGGAG
GCACGAGCGCCGAGGGGGAGCGGTTGGTCAACGCACTCACCTTCGGGTCT
TTGGGAAGTGGTACCAACAAGGTGTATCAAAGGATGTGGAACACGTGGAA
GGAGGCTCGAGCAGGGGCGGGTTCGGGCCCGTGGCTCCGCGAGAGCGATG
GGGTGGAAAGTGCGGTGCGTGAGCTGTCTGTGTTCATGGCTTGCCGGTGT
TTCGGTCACAAGAACCAGAGTCAGACTATCCGCGGGTATCTCTCAGCCAT
CAAGTACTTCCATAAGATGCACGCAGGATGGGAGTTGCCCACTTCGCATT
TCCAGATCCTTGCCATGTTGAAAACCATTGATAGGGTCCACGCCAATACG
CAGGCGAAGCCTAAGGTTAGGAATCCCCTTTCATGGAACATGCTAGAGGC
TGGAAAGTGCGTGGTCGAAAATTCGGGAGAATCAGGGAAGTTGATCTGGT
GTGGACTTGCCCTCTCGTACTTGCTGATGTGCCGAGCTTCAGAAATCTGG
GCGGACGACTCGGGGCTCGTGCACTCGGATTTTTGTCTGACAAGAGGAGA
CCTGGGTTTCTTTTGCGGTCCGGTAAGGGTTGCATGGGCAGACCGGAGGC
AGGCTAGCCAAGTGGAAGTCACGTTCAGAGCGTCAAAAGAAGATCAAAAA
CGTTTGGGAGCAACCGTCACAAGATCGGGAGTAGCGTTGAAGGTGTTACT
CGATCTGTTAGATCTGCACCCCGAGCTTGGGAGTCATGCGCCGTTGATGC
AATCGTGGGCACAAGACAAGTGGAAGGTTATTTCGAGGGCAGAGGCATCG
AGACACCTCAGGTTACTCGTGAGTGCGGCGGGTAGAGACCCACAGAAGTA
TGCGTTGCATTCAGGAAGGATCGGGGGGGCCACGCACCTAGCAAGTATGG
GGGCGTCGGTAATTCAGATCCAGAGAGCCGGAAGGTGGAAATCATCGGCT
TTCATGGTGTACGTTAGGGCGGGGGGTGAAGGAGCAAAGTTTGTGTCTCA
GGCCCTTACGGAACCCGAGGAGTGACCAGGGAGCGGTTCGGAGGAGTAGG
TCATCGGACATGCCTAATGGAGTAAGATATGTTGAGGCCAGAGGCCGAAA
CAATAGTAATGATAGTAGGGCAATCTTGGGAAGTTTGCAACGGGTTAGTC
CGATAAGTAAACGTTGTGAGCAAGACGGCATTTTACCTGCGCTCCCAATT
TGTTTCATGTGTCTTGGTTTTTCTTTGGTTGCCTGCAGAAAAAATAATCC
AGAATTCTTGAGCAAACATAAACGGGAAGATTCAGTACGTATTTGAATCT
GTGGTTTGTGGAGGCGTGTTGGAATTCGGAAAAGCGGGGATCGAAGAAAA
GTAGAGACAGCCCTGGTGGCAGAAAGTTTTTGTGCTCTCGCTGGGCGAGA
GACAAGCAGCAAGTGCATTTGAGAGAAGGAGAGGAGTAGCAGAGATAGCA
GCTTTGAGGAGCAGCAAATACAGAGTGCCGCCTAGGATTTGATCGATTTT
CCCGCCCACCCACACCTATCGCTCAAGAGAGGGGGGAGCATGGGGGGGTC
TAGTCGGTCGACGACTAGGAGGTACCGTGTAGGTAGTTTATTATGAGTAA
GATATGTTGAGGCCAGAGGCCGACACAATAGTAATGATAGTAGGGCAATC
TTGGGAAATTTGCAACGGGTTAGTCCGATAAGTAAACGTTGTGAGCAAGA
CGGCATTTTACCTGCGCTCCCAATTTGTTTCATGTGTCTTGGTTTTTCTT
TGGTTGCCTGCAGAAAAAAAAATCCAGAATTCTTGAGCAAACAATAAAAT
ACACTGACAAAGTGTTGGACTCTACATAGTCTACATGCGCTGAAAAAAAG
TGTAGTACACGTCTCACCACGAAAAATGGGGGGACTGTCGCCATAATAAA
TAGGACGAAAACACACATCAGGGTGTCGCTTTCGTCTGGAATACATGTAT
AGACACATCAAGACCGGAGATGTATGGCACGTTGTTGTGTACGCAGAGAC
TCGTTCGTACACAACAATGCAGCAGCAGCAAGCAGTGGATGGATGCCGTG
GTTATGTCTCGATCAAGAAGACCGGAGATAAATAGTCTATGACACATTGT
TGTGTAGGAAGAGGATCGTACAGTAATGCAGCAGCAGCAAGCAGCGGATG
CCGTGGGACCTCAGATTAAACAACGACAATACTTCCTTGACCTCGACCTC
TCGTGAGTACGTGGGAGAGACGAGGAACTGNGTCTATGACACATTGTTGT
GTAGGAAGAGGATCGTACAGTAATGCAGCAGCAGCAAGCAGCGGATGCCG
TGGGACCTCAGATTAAACAACGACAATACTTCCTTGACCTCGACCTCTCG
TGAGTACGTGGGAGAGACGAGGAACTGCGGACTTGCCACAGGAGATGGGG
AAAGATAAAGAGAGTGGTGGTACACGCAGCATGATGAACGCTGTCCTAAG
ATGGCTGGTGGTGAAGTAGCACGCGCCTTGCGCGAGGACCGCGGGGTGTT
TCTACTTCATCGCTCATATTCTGCCGATGCCAGTCGATCGTTCAGGTACG
AGTGCCGAGATTACCCATGAGAGACTTGGTGGGTTGAGGAGCGAGATCTA
CTCGCAGGAGCGAGATCTACTTCAAACAAGAGTTCC

Coding sequence (CDS) from alignment at Scaffold_630:1349464..1353799-

>EsuBft4245_2a-0001 ID=EsuBft4245_2a-0001|Name=EsuBft4245_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=237bp|location=Sequence derived from alignment at Scaffold_630:1349464..1353799- (Ectocarpus subulatus male Bft15b)
ATGCCTGGAGTTCCACGGTGCCTGTGCGGCGAAGCACTACCAGCTTTCCT
CGAGGAGCTCACTAGCCTACGAGTAAGATGGCCCGACAAGAGCATTCTCG
CAGCCAAGGCTGATGTCACCTCTGCGTTCAGAAATGTGAGGATGTCACCA
GATCATGCACACAACTTTTGCTACGTGATAGGAGACGTGCTAGTAGCGGA
TCTACGGCTGACCTTTGGCTGGGCAGCGTCACCATGA