EsuBft420_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft420_9a-0001
Unique NameEsuBft420_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_170contigScaffold_170:181126..182801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft420_9
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length130
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft420_9aEsuBft420_9aEctocarpus subulatus male Bft15bgeneScaffold_170 181126..182801 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_9a-0001-exonEsuBft420_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_170 181126..181447 -
EsuBft420_9a-0001-exonagat-exon-29277Ectocarpus subulatus male Bft15bexonScaffold_170 181677..182068 -
EsuBft420_9a-0001-exonagat-exon-29275Ectocarpus subulatus male Bft15bexonScaffold_170 182113..182442 -
EsuBft420_9a-0001-exonagat-exon-29276Ectocarpus subulatus male Bft15bexonScaffold_170 182544..182801 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_9a-0001-cdsEsuBft420_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_170 181126..181447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_9a-0001EsuBft420_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_170 181126..182801 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft420_9a-0001 ID=EsuBft420_9a-0001|Name=EsuBft420_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1302bp|location=Sequence derived from alignment at Scaffold_170:181126..182801- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGACCCCGAGGTAGATTCTGATCCGGACTGGGCCACGTCGGTAGC
GTTGGCCACATCCCTGGAGGCCGCGGACAAGGCGTCGGAGGCGCACCGAC
GGGCTTTCATGTCGCTGCGCTCGCCTTCTCCTTCGCGGGACAGTACCTCA
GGGATGCCCCTTGCGCGTACCAACAACCCGGTGTCTCGTGGGAAGTCCAT
TGCGCGCGCTTCCGTTGTTGCCATTCGCAATTGCTATGCGCCCTTGTCGT
CGTCGGGGGGCGGCCGTTGCAAAACGTCGTGCGTCGGTCACTGCGCGAGG
ACGGGGCGCAAGGTTCCCGGGAATGCGTTCCCTCTCGACCCGGGGACGAC
TTCCTCGCCGGTGCGGGCCGGGGTGCCGCTGACGTCGCCGCCGACGGACG
TGAAGTATAATAAGCAGCAGATCAGCGGCATGGCCACCGCTCAGAAGGCT
ACGCTGCGGATGGTTGACGAATTGAAGCAATTCCAGGCCAACGCCCGGAG
GGCAGTGGCGTACGCCGAACGCTGCGAGGCGGGGTCGGCCCGTGCCAAGC
ACGACGCCGCTCGCCAGTTCCGCGACATGAACGAGCAGGAGGAGCTGTGC
TCCCTCTCGCGCACCCGCGTCGCCATCGAAACCAAGAACGGGGACATGAT
GGCTAAGCTCTCGATGCTCAAGGCACAGCACCACGCCCTGGCGGACGGGG
TAACGGAAGCCCGCGGCAAGCGTGAGCCCAAGGTGCGCGAGGCCCGTGAG
GCTGTGGACGCGTGGAACGCCAAGGTGGCGGAGGCTTCGGCCCGGAAGCT
GCAATACAGGGACCTGCACACGGAGGCGGTGCTGAAGGCGGAAGCGATCC
TGGAGGCTGACGGTCGCTTGCTGCGCTCGACGAGGGTCTTCCAGCCACAG
CGGCTGAAGTTCTCAAGCAGAAGGCAGCTCGGGAGCGCCAGGCGCACGAG
GATGCAGCTCTCCTCAAGGAAGCCGGCGAGAAAGCGGAGCCGTCGGGCGG
ACACGGCGGTGAGACATTCCACCGCGGTGGGGGTGGCAGCCGGGGTGGAC
AGGGTGGTCGCCGTGGCAACGGGCACCATGGACAGGGCCGTGGAGGCGGC
CCTAGCAACTACCGTGGCAACAGCCGGTCGGGCTCGGACTCTGGTAGTGA
CTACCAGAATGCTCGGGCCTCCGGACACGGCCGCGCCAAATAACCACGCA
ACGGCGGGGACTATCTATGGTTCCGATGCCAGCGACGGCGGGTCTGCCGG
GCGTGGGAGTGGCCGCGGAGGCGCGGGTGGTGGCTACCAAGGGGGGGGNN
NN
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protein sequence of EsuBft420_9a-0001

>EsuBft420_9 ID=EsuBft420_9|Name=EsuBft420_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=434bp
MSDPEVDSDPDWATSVALATSLEAADKASEAHRRAFMSLRSPSPSRDSTS
GMPLARTNNPVSRGKSIARASVVAIRNCYAPLSSSGGGRCKTSCVGHCAR
TGRKVPGNAFPLDPGTTSSPVRAGVPLTSPPTDVKYNKQQISGMATAQKA
TLRMVDELKQFQANARRAVAYAERCEAGSARAKHDAARQFRDMNEQEELC
SLSRTRVAIETKNGDMMAKLSMLKAQHHALADGVTEARGKREPKVREARE
AVDAWNAKVAEASARKLQYRDLHTEAVLKAEAILEADGRLLRSTRVFQPQ
RLKFSSRRQLGSARRTRMQLSSRKPARKRSRRADTAVRHSTAVGVAAGVD
RVVAVATGTMDRAVEAALATTVATAGRARTLVVTTRMLGPPDTAAPNNHA
TAGTIYGSDASDGGSAGRGSGRGGAGGGYQGGGX
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mRNA from alignment at Scaffold_170:181126..182801-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft420_9a-0001 ID=EsuBft420_9a-0001|Name=EsuBft420_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1676bp|location=Sequence derived from alignment at Scaffold_170:181126..182801- (Ectocarpus subulatus male Bft15b)
ATGAGCGACCCCGAGGTAGATTCTGATCCGGACTGGGCCACGTCGGTAGC
GTTGGCCACATCCCTGGAGGCCGCGGACAAGGCGTCGGAGGCGCACCGAC
GGGCTTTCATGTCGCTGCGCTCGCCTTCTCCTTCGCGGGACAGTACCTCA
GGGATGCCCCTTGCGCGTACCAACAACCCGGTGTCTCGTGGGAAGTCCAT
TGCGCGCGCTTCCGTTGTTGCCATTCGCAATTGCTATGCGCCCTTGTCGT
CGTCGGGGGTTCGCCAGGTGGCCGAAGGCCGGGACGCTGGTGACGCAAGT
CCCTCGGAGGAGGACGAGCGGGTCGCGAGGCTTCAGGCAGACCTCGAGGA
AGCGAATAGGGCGGCCGTTGCAAAACGTCGTGCGTCGGTCACTGCGCGAG
GACGGGGCGCAAGGTTCCCGGGAATGCGTTCCCTCTCGACCCGGGGACGA
CTTCCTCGCCGGTGCGGGCCGGGGTGCCGCTGACGTCGCCGCCGACGGAC
GTGAAGTATAATAAGCAGCAGATCAGCGGCATGGCCACCGCTCAGAAGGC
TACGCTGCGGATGGTTGACGAATTGAAGCAATTCCAGGCCAACGCCCGGA
GGGCAGTGGCGTACGCCGAACGCTGCGAGGCGGGGTCGGCCCGTGCCAAG
CACGACGCCGCTCGCCAGTTCCGCGACATGAACGAGCAGGTGCGCCTGCA
AATGGTCGTCTGTGAGGATGTGTAGGAGTGCAGGAGGAGCTGTGCTCCCT
CTCGCGCACCCGCGTCGCCATCGAAACCAAGAACGGGGACATGATGGCTA
AGCTCTCGATGCTCAAGGCACAGCACCACGCCCTGGCGGACGGGGTAACG
GAAGCCCGCGGCAAGCGTGAGCCCAAGGTGCGCGAGGCCCGTGAGGCTGT
GGACGCGTGGAACGCCAAGGTGGCGGAGGCTTCGGCCCGGAAGCTGCAAT
ACAGGGACCTGCACACGGAGGCGGTGCTGAAGGCGGAAGCGATCCTGGAG
GCTGACGGTCGCTTGCTGCGCTCGACGAGGGTCTTCCAGCCACAGCGGCT
GAAGTTCTCAAGCAGAAGGCAGCTCGGGAGCGCCAGGCGCACGAGGATGC
AGCTCTCCTCAAGGAAGCCGGCGAGGTGAGTCCGCTGCGCTTTCCTTCGC
AGATCCGGGAAAACAAGGAGACCGAGCGGAGCGAGGCTCGGGACCGCTCC
TCCGGCTTGGGCGACGCCGAGTCTGGCGCGAGTGCGGGCTCTCTCTCGAG
GAAGATATCGAGCTGGCAAAGGCGGCCAGTCAGGTCATGGCCGCAATGCC
AGAGCTTACCTACGATCAGGCTTTGAGCACCGTGCAGAGTTCCCGGTCGG
GCAGAAAGCGGAGCCGTCGGGCGGACACGGCGGTGAGACATTCCACCGCG
GTGGGGGTGGCAGCCGGGGTGGACAGGGTGGTCGCCGTGGCAACGGGCAC
CATGGACAGGGCCGTGGAGGCGGCCCTAGCAACTACCGTGGCAACAGCCG
GTCGGGCTCGGACTCTGGTAGTGACTACCAGAATGCTCGGGCCTCCGGAC
ACGGCCGCGCCAAATAACCACGCAACGGCGGGGACTATCTATGGTTCCGA
TGCCAGCGACGGCGGGTCTGCCGGGCGTGGGAGTGGCCGCGGAGGCGCGG
GTGGTGGCTACCAAGGGGGGGGNNNN
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Coding sequence (CDS) from alignment at Scaffold_170:181126..182801-

>EsuBft420_9a-0001 ID=EsuBft420_9a-0001|Name=EsuBft420_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1302bp|location=Sequence derived from alignment at Scaffold_170:181126..182801- (Ectocarpus subulatus male Bft15b)
ATGAGCGACCCCGAGGTAGATTCTGATCCGGACTGGGCCACGTCGGTAGC
GTTGGCCACATCCCTGGAGGCCGCGGACAAGGCGTCGGAGGCGCACCGAC
GGGCTTTCATGTCGCTGCGCTCGCCTTCTCCTTCGCGGGACAGTACCTCA
GGGATGCCCCTTGCGCGTACCAACAACCCGGTGTCTCGTGGGAAGTCCAT
TGCGCGCGCTTCCGTTGTTGCCATTCGCAATTGCTATGCGCCCTTGTCGT
CGTCGGGGGGCGGCCGTTGCAAAACGTCGTGCGTCGGTCACTGCGCGAGG
ACGGGGCGCAAGGTTCCCGGGAATGCGTTCCCTCTCGACCCGGGGACGAC
TTCCTCGCCGGTGCGGGCCGGGGTGCCGCTGACGTCGCCGCCGACGGACG
TGAAGTATAATAAGCAGCAGATCAGCGGCATGGCCACCGCTCAGAAGGCT
ACGCTGCGGATGGTTGACGAATTGAAGCAATTCCAGGCCAACGCCCGGAG
GGCAGTGGCGTACGCCGAACGCTGCGAGGCGGGGTCGGCCCGTGCCAAGC
ACGACGCCGCTCGCCAGTTCCGCGACATGAACGAGCAGGAGGAGCTGTGC
TCCCTCTCGCGCACCCGCGTCGCCATCGAAACCAAGAACGGGGACATGAT
GGCTAAGCTCTCGATGCTCAAGGCACAGCACCACGCCCTGGCGGACGGGG
TAACGGAAGCCCGCGGCAAGCGTGAGCCCAAGGTGCGCGAGGCCCGTGAG
GCTGTGGACGCGTGGAACGCCAAGGTGGCGGAGGCTTCGGCCCGGAAGCT
GCAATACAGGGACCTGCACACGGAGGCGGTGCTGAAGGCGGAAGCGATCC
TGGAGGCTGACGGTCGCTTGCTGCGCTCGACGAGGGTCTTCCAGCCACAG
CGGCTGAAGTTCTCAAGCAGAAGGCAGCTCGGGAGCGCCAGGCGCACGAG
GATGCAGCTCTCCTCAAGGAAGCCGGCGAGAAAGCGGAGCCGTCGGGCGG
ACACGGCGGTGAGACATTCCACCGCGGTGGGGGTGGCAGCCGGGGTGGAC
AGGGTGGTCGCCGTGGCAACGGGCACCATGGACAGGGCCGTGGAGGCGGC
CCTAGCAACTACCGTGGCAACAGCCGGTCGGGCTCGGACTCTGGTAGTGA
CTACCAGAATGCTCGGGCCTCCGGACACGGCCGCGCCAAATAACCACGCA
ACGGCGGGGACTATCTATGGTTCCGATGCCAGCGACGGCGGGTCTGCCGG
GCGTGGGAGTGGCCGCGGAGGCGCGGGTGGTGGCTACCAAGGGGGGGGNN
NN
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