EsuBft420_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft420_5a-0001
Unique Name	EsuBft420_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_170	contig	Scaffold_170:153841..155322 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LN28
ProteomeId	EsuBft420_5
Protein domains	PTHR19303
Protein domains	IPR004875
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	148
Evalue	8.72e-44
EggNOG OGs	2CZS4@1\|root,2SBGG@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	DDE superfamily endonuclease
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft420_5a	EsuBft420_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_170 153841..155322 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft420_5a-0001-exon	EsuBft420_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_170 153841..155322 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft420_5a-0001-cds	EsuBft420_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_170 153841..155322 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft420_5a-0001	EsuBft420_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_170 153841..155322 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_170:153841..155322-
coding sequence from alignment at Scaffold_170:153841..155322-

spliced messenger RNA

>EsuBft420_5a-0001 ID=EsuBft420_5a-0001|Name=EsuBft420_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1482bp|location=Sequence derived from alignment at Scaffold_170:153841..155322- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCCAACTCGCGAGAAAACTGCACGATCGTCACCACCATCAACGC
CGCCGGCGCCGTGCTGGACCCTACCATCATCTCCAAAGGGCAACGTTTCA
ACAGAGATTGGATCGCGGATAGGAAGGGTCCGCCGGGTGCGACGTACACC
TGCACGGAATCGTCCTTCATGTTCGGTGACGTCTCCATCAAGTACATCAA
AAACCTCCACGAGCAGCTTGGCCGGCGTGGCTTGCTCGACGGAAAACCCT
NCGTCACCACCATCAACGCCGCCGGCGCCGTGCTGGACCCTACCATCATC
TCCAAAGGGCAACGTTTCAACAGAGATTGGATCGCGGATAGGAAGGGTCC
GCCGGGTGCGACGTACACCTGCACGGAATCGTCCTTCATGTTCGGTGACG
TCTCCATCAAGTACATCAAAAACCTCCACGAGCAGCTTGGCCGGCGTGGC
TTGCTCGACGGAAAACCCTACGTGCTCGTGCTGGATGGGCACGCGTCGCA
CGTGAGCTTTGAAGTCATCCAGTTGGCCAAGTCCCTCAACATTCACCTCG
TCCAGCTGCCCTCCCACATGTCGCACGTCACCCAGCCCTTGGACGTCGCT
AGCTTCGGCTGTTTCAAGGAGCTGACCACAGCGATCGCGGTCTTCCCGTC
GAAACACGGAGGGGCATTGCCGCGGAAGCGGGACATGGCCGGCTTGATCG
GGCAAGCGTGGAGCATGACTTTTACGCCGGAAATCAACAAAGCTTCCTTC
GCCGGGGCGGGCCTGTGGCCGGTGGACAAGGAACGGGCACTCACTCGNGA
TGGGCACGCGTCGCACGTGAGCTTTGAAGTCATCCAGTTGGCCAAGTCCC
TCAACACCCACCTCGAACAGCTGCCCTCCCACATGTCGCACGTCACCCAG
CCCTTGGACGTCGCTAGCTTCGGCTGTTTCAAGGAGCTGACCACAGCGAT
CGCGGTCTTCCCGTCGAAACACGGAGGGGCATTGCCGCGGAAGCGGGACA
TGGCCGGCTTGATCGGGCAAGCGTGGAGCATGACTTTTACGCCGGAAATC
AACAAAGCTTCCTTCGCCGGGGCGGGCCTGTGGCCGGTGGACAAGGAACG
GGCACTCACTCGGCTGCAGCGCCCGAAGAGGAAGGCGCGGGAAGCCGACC
GCCCTTCCCTGCAGGACGTCCCCATCGTCGTGAGCAACGAACAGCTGGAG
GAGCTGCTGGGCGAGCGCGGCGTCCACAAGGCCCGGGCAGAAGGCCACAC
CATCCCGGGAGTTCGCGTGAGTACGGTGCTTCTCGGCCTTTACCTGCCCA
ACAACCGCCCCAAGAAAAAACGCCAACGCGGGCGATCCTGGGCATTCCAG
ACGGAGGACTCCTCACTGATGAAGAAAGGATGGCGAGGCAAGAGGACAAA
ACACGCGAACTGCAGGCTGCCGAGGCCGCTAAGACGGCAAAGACCGTGGC
GCGGGAAGAGGCACGAGACGCGAGGAGGGTAG

protein sequence of EsuBft420_5a-0001

>EsuBft420_5 ID=EsuBft420_5|Name=EsuBft420_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=493bp
MLANSRENCTIVTTINAAGAVLDPTIISKGQRFNRDWIADRKGPPGATYT
CTESSFMFGDVSIKYIKNLHEQLGRRGLLDGKPXVTTINAAGAVLDPTII
SKGQRFNRDWIADRKGPPGATYTCTESSFMFGDVSIKYIKNLHEQLGRRG
LLDGKPYVLVLDGHASHVSFEVIQLAKSLNIHLVQLPSHMSHVTQPLDVA
SFGCFKELTTAIAVFPSKHGGALPRKRDMAGLIGQAWSMTFTPEINKASF
AGAGLWPVDKERALTRDGHASHVSFEVIQLAKSLNTHLEQLPSHMSHVTQ
PLDVASFGCFKELTTAIAVFPSKHGGALPRKRDMAGLIGQAWSMTFTPEI
NKASFAGAGLWPVDKERALTRLQRPKRKAREADRPSLQDVPIVVSNEQLE
ELLGERGVHKARAEGHTIPGVRVSTVLLGLYLPNNRPKKKRQRGRSWAFQ
TEDSSLMKKGWRGKRTKHANCRLPRPLRRQRPWRGKRHETRGG

mRNA from alignment at Scaffold_170:153841..155322-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft420_5a-0001 ID=EsuBft420_5a-0001|Name=EsuBft420_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1482bp|location=Sequence derived from alignment at Scaffold_170:153841..155322- (Ectocarpus subulatus male Bft15b)
ATGCTTGCCAACTCGCGAGAAAACTGCACGATCGTCACCACCATCAACGC
CGCCGGCGCCGTGCTGGACCCTACCATCATCTCCAAAGGGCAACGTTTCA
ACAGAGATTGGATCGCGGATAGGAAGGGTCCGCCGGGTGCGACGTACACC
TGCACGGAATCGTCCTTCATGTTCGGTGACGTCTCCATCAAGTACATCAA
AAACCTCCACGAGCAGCTTGGCCGGCGTGGCTTGCTCGACGGAAAACCCT
NCGTCACCACCATCAACGCCGCCGGCGCCGTGCTGGACCCTACCATCATC
TCCAAAGGGCAACGTTTCAACAGAGATTGGATCGCGGATAGGAAGGGTCC
GCCGGGTGCGACGTACACCTGCACGGAATCGTCCTTCATGTTCGGTGACG
TCTCCATCAAGTACATCAAAAACCTCCACGAGCAGCTTGGCCGGCGTGGC
TTGCTCGACGGAAAACCCTACGTGCTCGTGCTGGATGGGCACGCGTCGCA
CGTGAGCTTTGAAGTCATCCAGTTGGCCAAGTCCCTCAACATTCACCTCG
TCCAGCTGCCCTCCCACATGTCGCACGTCACCCAGCCCTTGGACGTCGCT
AGCTTCGGCTGTTTCAAGGAGCTGACCACAGCGATCGCGGTCTTCCCGTC
GAAACACGGAGGGGCATTGCCGCGGAAGCGGGACATGGCCGGCTTGATCG
GGCAAGCGTGGAGCATGACTTTTACGCCGGAAATCAACAAAGCTTCCTTC
GCCGGGGCGGGCCTGTGGCCGGTGGACAAGGAACGGGCACTCACTCGNGA
TGGGCACGCGTCGCACGTGAGCTTTGAAGTCATCCAGTTGGCCAAGTCCC
TCAACACCCACCTCGAACAGCTGCCCTCCCACATGTCGCACGTCACCCAG
CCCTTGGACGTCGCTAGCTTCGGCTGTTTCAAGGAGCTGACCACAGCGAT
CGCGGTCTTCCCGTCGAAACACGGAGGGGCATTGCCGCGGAAGCGGGACA
TGGCCGGCTTGATCGGGCAAGCGTGGAGCATGACTTTTACGCCGGAAATC
AACAAAGCTTCCTTCGCCGGGGCGGGCCTGTGGCCGGTGGACAAGGAACG
GGCACTCACTCGGCTGCAGCGCCCGAAGAGGAAGGCGCGGGAAGCCGACC
GCCCTTCCCTGCAGGACGTCCCCATCGTCGTGAGCAACGAACAGCTGGAG
GAGCTGCTGGGCGAGCGCGGCGTCCACAAGGCCCGGGCAGAAGGCCACAC
CATCCCGGGAGTTCGCGTGAGTACGGTGCTTCTCGGCCTTTACCTGCCCA
ACAACCGCCCCAAGAAAAAACGCCAACGCGGGCGATCCTGGGCATTCCAG
ACGGAGGACTCCTCACTGATGAAGAAAGGATGGCGAGGCAAGAGGACAAA
ACACGCGAACTGCAGGCTGCCGAGGCCGCTAAGACGGCAAAGACCGTGGC
GCGGGAAGAGGCACGAGACGCGAGGAGGGTAG

Coding sequence (CDS) from alignment at Scaffold_170:153841..155322-

>EsuBft420_5a-0001 ID=EsuBft420_5a-0001|Name=EsuBft420_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1482bp|location=Sequence derived from alignment at Scaffold_170:153841..155322- (Ectocarpus subulatus male Bft15b)
ATGCTTGCCAACTCGCGAGAAAACTGCACGATCGTCACCACCATCAACGC
CGCCGGCGCCGTGCTGGACCCTACCATCATCTCCAAAGGGCAACGTTTCA
ACAGAGATTGGATCGCGGATAGGAAGGGTCCGCCGGGTGCGACGTACACC
TGCACGGAATCGTCCTTCATGTTCGGTGACGTCTCCATCAAGTACATCAA
AAACCTCCACGAGCAGCTTGGCCGGCGTGGCTTGCTCGACGGAAAACCCT
NCGTCACCACCATCAACGCCGCCGGCGCCGTGCTGGACCCTACCATCATC
TCCAAAGGGCAACGTTTCAACAGAGATTGGATCGCGGATAGGAAGGGTCC
GCCGGGTGCGACGTACACCTGCACGGAATCGTCCTTCATGTTCGGTGACG
TCTCCATCAAGTACATCAAAAACCTCCACGAGCAGCTTGGCCGGCGTGGC
TTGCTCGACGGAAAACCCTACGTGCTCGTGCTGGATGGGCACGCGTCGCA
CGTGAGCTTTGAAGTCATCCAGTTGGCCAAGTCCCTCAACATTCACCTCG
TCCAGCTGCCCTCCCACATGTCGCACGTCACCCAGCCCTTGGACGTCGCT
AGCTTCGGCTGTTTCAAGGAGCTGACCACAGCGATCGCGGTCTTCCCGTC
GAAACACGGAGGGGCATTGCCGCGGAAGCGGGACATGGCCGGCTTGATCG
GGCAAGCGTGGAGCATGACTTTTACGCCGGAAATCAACAAAGCTTCCTTC
GCCGGGGCGGGCCTGTGGCCGGTGGACAAGGAACGGGCACTCACTCGNGA
TGGGCACGCGTCGCACGTGAGCTTTGAAGTCATCCAGTTGGCCAAGTCCC
TCAACACCCACCTCGAACAGCTGCCCTCCCACATGTCGCACGTCACCCAG
CCCTTGGACGTCGCTAGCTTCGGCTGTTTCAAGGAGCTGACCACAGCGAT
CGCGGTCTTCCCGTCGAAACACGGAGGGGCATTGCCGCGGAAGCGGGACA
TGGCCGGCTTGATCGGGCAAGCGTGGAGCATGACTTTTACGCCGGAAATC
AACAAAGCTTCCTTCGCCGGGGCGGGCCTGTGGCCGGTGGACAAGGAACG
GGCACTCACTCGGCTGCAGCGCCCGAAGAGGAAGGCGCGGGAAGCCGACC
GCCCTTCCCTGCAGGACGTCCCCATCGTCGTGAGCAACGAACAGCTGGAG
GAGCTGCTGGGCGAGCGCGGCGTCCACAAGGCCCGGGCAGAAGGCCACAC
CATCCCGGGAGTTCGCGTGAGTACGGTGCTTCTCGGCCTTTACCTGCCCA
ACAACCGCCCCAAGAAAAAACGCCAACGCGGGCGATCCTGGGCATTCCAG
ACGGAGGACTCCTCACTGATGAAGAAAGGATGGCGAGGCAAGAGGACAAA
ACACGCGAACTGCAGGCTGCCGAGGCCGCTAAGACGGCAAAGACCGTGGC
GCGGGAAGAGGCACGAGACGCGAGGAGGGTAG