EsuBft420_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft420_17a-0001
Unique NameEsuBft420_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_170contigScaffold_170:234206..235028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LHS5
ProteomeIdEsuBft420_17
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length73
Hectar predicted targeting categoryno signal peptide or anchor
Evalue3.07e-08
EggNOG OGsCOG3868@1|root,2RCTR@2759|Eukaryota
Ec32 ortholog descriptionGlycoside-hydrolase family GH114, TIM-barrel domain
Ec32 orthologEc-18_000280.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionEndo alpha-1,4 polygalactosaminidase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft420_17aEsuBft420_17aEctocarpus subulatus male Bft15bgeneScaffold_170 234206..235028 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_17a-0001-exonagat-exon-29299Ectocarpus subulatus male Bft15bexonScaffold_170 234206..234869 -
EsuBft420_17a-0001-exonEsuBft420_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_170 234954..235028 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_17a-0001-exonagat-three_prime_utr-15464Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_170 234206..234848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_17a-0001-cdsEsuBft420_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_170 234849..234869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_17a-0001EsuBft420_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_170 234849..235028 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft420_17a-0001 ID=EsuBft420_17a-0001|Name=EsuBft420_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=739bp|location=Sequence derived from alignment at Scaffold_170:234206..235028- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATCATGAAAGCTCGTGTGGATAGGGCGGCATCCCTGGGGTGTGA
CGGGATCGAGCCGGACAACATGTCGGAAGGAGGGCGGCAACACTGAGTGT
GCACGCGTTGACAAACAAAAAGCGCCTGTGTTTCGCCTGGCCGTGAGGCC
CACACCGCTTATTGAGACTGGGGGTCTAGTGTATCCCTCTCGTACGTACT
TCGACCGGCTGGTCATCCGAAATGAGGGTGGCCACAATACCGCGCACGGT
ATTCCTCTCCCGCATGTAGGTGCCATTCCCATGCGTTCTCTCGGCGAGAC
GGTTCCGAACATCGTTCCGGAGATCGTCCCGTAGTCCCCCTTCGTCTGCC
GGCCCTCACGCCTTGCTCTCTGTCCTGCTGCTGAGATACTCCAGGGTTCC
CACGTTAAATTGACACGAAAATTTTGGACTGAGATAGATCGACACCAAAA
AAAGTGACAGTTGGCAAATTGACACGAAAAAAGGTAACGGTTGCTAAATT
GACACGAAAAAATATTCCGCCGCACGTTGCCTGGCGAAGGGCAGCAGCGG
CGCAGCCTCAAGTTAAAAAAAATTCAACCCCAGCTGCACCGCTGCACCGC
CGGGAAGAAACCCAACGGTCGCGCTCCCTCATCACCGCACCCGACACGGA
GCGAGGGGATGGCGCGCCTTGCGCGAGGTAGGATCCGCTACTAGTGGTAT
GATGAGTGCATGCAGGTTCTACTGCTTGCTGTGTTGTGC
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protein sequence of EsuBft420_17a-0001

>EsuBft420_17 ID=EsuBft420_17|Name=EsuBft420_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=31bp
MDIMKARVDRAASLGCDGIEPDNMSEGGRQH
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mRNA from alignment at Scaffold_170:234206..235028-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft420_17a-0001 ID=EsuBft420_17a-0001|Name=EsuBft420_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=823bp|location=Sequence derived from alignment at Scaffold_170:234206..235028- (Ectocarpus subulatus male Bft15b)
ATGGACATCATGAAAGCTCGTGTGGATAGGGCGGCATCCCTGGGGTGTGA
CGGGATCGAGCCGGACAACATGTCGGTGAGCTTGGCTCTTGGCAAGACAT
GCAGTAGTCATTGAAGAGAGACACGATATACAAGGGCTGGATGTTGTGGT
GGTTTGCAGGAAGGAGGGCGGCAACACTGAGTGTGCACGCGTTGACAAAC
AAAAAGCGCCTGTGTTTCGCCTGGCCGTGAGGCCCACACCGCTTATTGAG
ACTGGGGGTCTAGTGTATCCCTCTCGTACGTACTTCGACCGGCTGGTCAT
CCGAAATGAGGGTGGCCACAATACCGCGCACGGTATTCCTCTCCCGCATG
TAGGTGCCATTCCCATGCGTTCTCTCGGCGAGACGGTTCCGAACATCGTT
CCGGAGATCGTCCCGTAGTCCCCCTTCGTCTGCCGGCCCTCACGCCTTGC
TCTCTGTCCTGCTGCTGAGATACTCCAGGGTTCCCACGTTAAATTGACAC
GAAAATTTTGGACTGAGATAGATCGACACCAAAAAAAGTGACAGTTGGCA
AATTGACACGAAAAAAGGTAACGGTTGCTAAATTGACACGAAAAAATATT
CCGCCGCACGTTGCCTGGCGAAGGGCAGCAGCGGCGCAGCCTCAAGTTAA
AAAAAATTCAACCCCAGCTGCACCGCTGCACCGCCGGGAAGAAACCCAAC
GGTCGCGCTCCCTCATCACCGCACCCGACACGGAGCGAGGGGATGGCGCG
CCTTGCGCGAGGTAGGATCCGCTACTAGTGGTATGATGAGTGCATGCAGG
TTCTACTGCTTGCTGTGTTGTGC
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Coding sequence (CDS) from alignment at Scaffold_170:234206..235028-

>EsuBft420_17a-0001 ID=EsuBft420_17a-0001|Name=EsuBft420_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=96bp|location=Sequence derived from alignment at Scaffold_170:234206..235028- (Ectocarpus subulatus male Bft15b)
ATGGACATCATGAAAGCTCGTGTGGATAGGGCGGCATCCCTGGGGTGTGA
CGGGATCGAGCCGGACAACATGTCGGAAGGAGGGCGGCAACACTGA
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