EsuBft420_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft420_16a-0001
Unique NameEsuBft420_16a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_170contigScaffold_170:214052..218917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LHS7
ProteomeIdEsuBft420_16
Protein domainsIPR009858
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length197
Hectar predicted targeting categoryother localisation
Evalue4.63e-220
EggNOG OGsCOG3310@1|root,2SA80@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF1415
Ec32 orthologEc-18_000300.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionProtein of unknown function (DUF1415)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft420_16aEsuBft420_16aEctocarpus subulatus male Bft15bgeneScaffold_170 214052..218917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_16a-0001EsuBft420_16Ectocarpus subulatus male Bft15bpolypeptideScaffold_170 214660..218641 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_16a-0001-exonEsuBft420_16a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_170 214052..214845 -
EsuBft420_16a-0001-exonagat-exon-29297Ectocarpus subulatus male Bft15bexonScaffold_170 216029..216139 -
EsuBft420_16a-0001-exonagat-exon-29296Ectocarpus subulatus male Bft15bexonScaffold_170 217052..217543 -
EsuBft420_16a-0001-exonagat-exon-29298Ectocarpus subulatus male Bft15bexonScaffold_170 218342..218917 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_16a-0001-exonagat-three_prime_utr-15463Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_170 214052..214659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_16a-0001-cdsEsuBft420_16a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_170 214660..214845 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_16a-0001-exonagat-five_prime_utr-9845Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_170 218642..218917 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft420_16a-0001 ID=EsuBft420_16a-0001|Name=EsuBft420_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1973bp|location=Sequence derived from alignment at Scaffold_170:214052..218917- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGAGGGCCGTACGCCCCGAATCAGGCTCCCTCAAGGAGCACCAACGCCAG
TGGTAGGTTGAAAGGTGAACGAACGAACGGACGCCTTGTACAGTCCACTA
CCTTGCTGCTCTGTCCGAGAAACTTCGTCAATACGACAAGTTCGAACTCC
ACGCAAGTGGCTCCTCACTGGACTGTTCGTGTCGCCCAACCAACAGGCTT
CTCGACAGCGCCAACGGCAAGCGGGCAGAAAGAGAGGAGATGAGGCCGAC
AAAACTTGGCTAGAGGTACCGACGTGATGGGAAATCTCCTCTACAGTCCA
CTACGCGGCCACGCGACACCGCCATCGGCCTTCTCCGCCGTCGTGCCCCG
AGGGCTTCCAGCGTTCGTCTCATCAAGCGTCCAGGTGCCGCCGGCACTGC
TGTTGTTGCATCCGGCGTCTACATCTAAGTCACCTCCTCGATATCATCCT
CCGATTCGGAGCAGTGTCTCGCGCGGAGGGTGTGGTGGAGTCAGGAGGGG
ATTTGCTTGCAGGAGGAAACTTCTTCGTCGTGCCTCAGCAGACCAATCGT
TGTTGCTGTGTTCACTCACCACGGAGGCTTCCGATCAGGCTGCCAGCCCG
TGCCCGGAAAATCCACGCTCTCCGCGGCAAGAGAGGGACAACCGTGGCGA
CGCCATAGCGCAGGCCACTCTGCGCTGGATCCGCTCCACCGTAGTAGGGC
TAAACCTCTGCCCGTGGGCAGCCGGCGCCCTTGTAGGCGGACAACTGCGA
GTCCTTGTACACCCGGCGCAGCCGCCTCTGCCAGCCGCTACCGACTACCA
CGAACGCCCCCCTGGTAGTGATGTCGCCGGCGGCGTGACCGGGGACTCCG
GCTCAAGCAGCGATGGGGTTGATCTGTTGGAGGGCTTCGTGAAGGTGGCC
GCGCGAGAGGCGGTGGCGCTGAGCGCTCTGGGCGGGGAGGTCGCTGCTAA
CGCCACGACGCTGGTCGTAGCGAGGCCGCCGCTAGCGCAAGGCTTTGAGG
AGTTTCTTTCCGTGGCCGGGGCCGTGGACGAATTCATTGACGAATCGGGT
ATGCGGGGCAAGGTCCAGCTGGCGACGTTTCACCCTCAGTACCGGTTCGA
GGGCTCTGAGGAGGATGACGCGTCCAACTACACAAATCGATCCCCTTACC
CCGTGCTGCACCTTCTACTGGAAGACCAGGTGTCTGCGGCGGTCAAGCAG
ATCAGCGACCCGGCTAAGGTGTGGGAGAGGAACGTCGAAACCACGAGGAA
GCTTGGCGTGGAAGCCATGCGTCGTGGGGTAGAGGCGTGCCTTTTGCCCT
CCTGGCCACCGCAGCAGACGCCGAAGGAAGCAAAAACAGACCTGGAGGAG
AGGAACGAGCGATGATGGCGTTCTCTTGCAATTGCGTCTCAAACCCATTT
TTCTTTGTGCATGTGCGGCGGATCCGTTGCACGTCGGTTTCATCCTGTAA
GGGGAGGCGAGTCATCGCTGCTGTAGACTGTTGGTCGATGGAGCGGGCAG
GTAGATCGCCCGCCCTTTCGACTCGCCGCGACGTAGGCCCTAAACAGAGT
CGTGGCAAAGAGGGTGCCTTGTAAGAGGCAGCTCCGATGTGAGAGGGTTC
GAATCGATTGCCGTGGACTCGACCTGCTTCGCATACACAGATGGGGTACA
CTACCCTCTTTTTCCCGTACAAGAGAGGTTTCCGATTCAAGAGGGTCGAA
TCTAAGGCCGTTGTCACGCCACCTTCTTATCTCGAAGCCACGACTGTAGA
TTGCTGTGAAACAAGGCTGCTGGAAAAAGTCGGCCCCCAACTCTTTCGTC
ACCACTGGTGCACAGTTTGATGCATGCATGATGCTATGGGCCCCAACGAA
CTCCACGGCGTGCCTGGAATTTGTTTCTGGAGGAGCTTGTAATTGGTTCT
CGATATTTGATCACACGCTACAGCTCAGGGTCTTGCTGAGAAAAATAAGT
AAAAAGGGAATTGGTTAATTATT
back to top

protein sequence of EsuBft420_16a-0001

>EsuBft420_16 ID=EsuBft420_16|Name=EsuBft420_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=362bp
MGNLLYSPLRGHATPPSAFSAVVPRGLPAFVSSSVQVPPALLLLHPASTS
KSPPRYHPPIRSSVSRGGCGGVRRGFACRRKLLRRASADQSLLLCSLTTE
ASDQAASPCPENPRSPRQERDNRGDAIAQATLRWIRSTVVGLNLCPWAAG
ALVGGQLRVLVHPAQPPLPAATDYHERPPGSDVAGGVTGDSGSSSDGVDL
LEGFVKVAAREAVALSALGGEVAANATTLVVARPPLAQGFEEFLSVAGAV
DEFIDESGMRGKVQLATFHPQYRFEGSEEDDASNYTNRSPYPVLHLLLED
QVSAAVKQISDPAKVWERNVETTRKLGVEAMRRGVEACLLPSWPPQQTPK
EAKTDLEERNER
back to top

mRNA from alignment at Scaffold_170:214052..218917-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft420_16a-0001 ID=EsuBft420_16a-0001|Name=EsuBft420_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4866bp|location=Sequence derived from alignment at Scaffold_170:214052..218917- (Ectocarpus subulatus male Bft15b)
TGAGGGCCGTACGCCCCGAATCAGGCTCCCTCAAGGAGCACCAACGCCAG
TGGTAGGTTGAAAGGTGAACGAACGAACGGACGCCTTGTACAGTCCACTA
CCTTGCTGCTCTGTCCGAGAAACTTCGTCAATACGACAAGTTCGAACTCC
ACGCAAGTGGCTCCTCACTGGACTGTTCGTGTCGCCCAACCAACAGGCTT
CTCGACAGCGCCAACGGCAAGCGGGCAGAAAGAGAGGAGATGAGGCCGAC
AAAACTTGGCTAGAGGTACCGACGTGATGGGAAATCTCCTCTACAGTCCA
CTACGCGGCCACGCGACACCGCCATCGGCCTTCTCCGCCGTCGTGCCCCG
AGGGCTTCCAGCGTTCGTCTCATCAAGCGTCCAGGTGCCGCCGGCACTGC
TGTTGTTGCATCCGGCGTCTACATCTAAGTCACCTCCTCGATATCATCCT
CCGATTCGGAGCAGTGTCTCGCGCGGAGGGTGTGGTGGAGTCAGGAGGGG
ATTTGCTTGCAGGAGGAAACTTCTTCGTCGTGCCTCAGCAGACCAATCGT
TGTTGCTGTGTTCACTCACCACGGAGGTGAGTGAGAAGTGTTTGCGGCCG
TGATGATCGGCCACGGCTACAGTAAGGTGTGTTGAGTACGTTCACCGTCT
CCACGACCCATGTGATCATCACGAAGGGTACCAGACCGTGGCCGCAAGTA
AATTGGCATCTTCTTATTTGTGAAGCCGTGTACTTGTTGTTTCTCACATT
AGCTCTAAAAAAGAGAGATTGGGAGCCCGTGGTCTCAANAAAAAAGAAAG
ATTGGGAGCCCGTGGTCTCAAAACCCGGCATACACGACCCCACGAAGAAA
CAGAAAAAAATAGGGTACAAAAACCACTCGGAAGAGAAACAAAATGATAG
ACAGAAAGACCAGCTACCGCACCAAACGAGAAAGAGCGTCGAGACCGATC
AAAATAAAATAAAAGGAGAACGGGGAACGCTTCCCACACCCGCCTACAAC
GCCGGAGGGTTCCGTGCCGGGTTCCTGCCGACCAGGCATCCCCCGCCCTG
CAGGAGAGTGTATCACTTGAGGGCATACGCTGCTGCGGACCTCCGGTATC
ACCACCACCCTTCTGCTGCTGCTGTGTGCATACATGTACCAGGGGTACTG
TAGTTGAATTCGTAGGGCAAACCGAACCACAGCATTGCCGTAGCCAGGAT
ATTCCGCACGATCGTTCATCTTCATACCGACTAACATATTTCACCATGTC
TGACGTTGGATTGCTGCCTTACTGATTTGTGATGCACCCGAAGCGTGCTG
CTCGTGCTACTCCTTTTCCATCTCTCCGAAACAAACGTACCCCCGCCATG
TCCGGTTGGCTTGATTCCGATCAGGCTTCCGATCAGGCTGCCAGCCCGTG
CCCGGAAAATCCACGCTCTCCGCGGCAAGAGAGGGACAACCGTGGCGACG
CCATAGCGCAGGCCACTCTGCGCTGGATCCGCTCCACCGTAGTAGGGCTA
AACCTCTGCCCGTGGGCAGCCGGCGCCCTTGTAGGCGGACAACTGCGAGT
CCTTGTACACCCGGCGCAGCCGCCTCTGCCAGCCGCTACCGACTACCACG
AACGCCCCCCTGGTAGTGATGTCGCCGGCGGCGTGACCGGGGACTCCGGC
TCAAGCAGCGATGGGGTTGATCTGTTGGAGGGCTTCGTGAAGGTGGCCGC
GCGAGAGGCGGTGGCGCTGAGCGCTCTGGGCGGGGAGGTCGCTGCTAACG
CCACGACGCTGGTCGTAGCGAGGCCGCCGCTAGCGCAAGGCTTTGAGGAG
TTTCTTTCCGTGGCCGGGGCCGTGGACGAATTCATTGACGAATCGGGTAT
GCGGGGCAAGGTCCAGGTGAAGGATGTATTTATTTATTTTTTTGCTCCTC
GTCCTGTGCGTTCTATGTAGTACAAATCACATGTGCCGTATGTTCCATGT
GTTGATCCGCCTTTTTCTTCATTAAAGCGGATGTGGCCAAGGCGGTGGTG
GGCGGGCACAAGTTGGTGTCATCGCCGGCTGTGTTTGTGCTCTCGATCTA
CTGAACTACTTTCTAGCAGCTCCGGCTTCATCTAAGATCTCATCTGTGTT
GTTTCGAAAACGACTGCTCCACCGGTCGCAATGACCCCCTTGCTCCCACG
GGAAGCATCGCATCCGTGCCTACCGTAAGTTGTTCGTGGGGGGCAACATC
TGACGCACGTACCAATACCAAGGCTTAAATCTTCCCGCCTTGACTGCTAA
CTGCCCATAGTAGCACATGACTGTTTCTGCTTTCCGAATTCTCCGGAAGA
CTTCTTGTACGAATGATTTGGGGGTTATATGCGCTTGGTACAGGCTATAA
TAGTCACGCTCGTCCTCGATATCCTTCTCTTGAGCGGCTTCGGTTCCATC
CTCACTTGTCGTAGACTTCCTGTATGTCGCCCTCAAACCCCACCACCATA
TTCTTCGTTGTCCATACGGCACAACGAGGTTTTTACCCGAAACTTTTATT
CTAGAAGCACTTGACGGGTTGCTGCGCTGAGTAGCCTCTCATAGGACTGA
AGTGAGCCATGCATCCTACCATAGCTTTGTTCCAGAATGGAGTGGGCACC
TGCTAGGTCTAGGAAATAGAACGGCGCACGACAAACGGTCAAGTGTAGGC
AGCCGCGTCCTTCTGCTGGACCCATCGTCTGACAGCTCCTTCGTACTGCG
ATGCACAACTGCGCGTACCCCACCCCCCTCGCCACCATTTTTTTTCCGAT
CGTGTTGGACGCCCCCACATGCATGAAGCTGGCGACGTTTCACCCTCAGT
ACCGGTTCGAGGGCTCTGAGGAGGATGACGCGTCCAACTACACAAATCGA
TCCCCTTACCCCGTGCTGCACCTTCTACTGGAAGACCAGGTACGGGTGGT
TCCCCTCCCAAGGTGACGCAAACCCCTCTTTGGCCTTGTTCTAGCGGTTG
GTCTTGCGAGTGTCAGAAGTCGTGCGTTCTGTGTTGATTGTTTTGTGCGT
GTATGGAATAGCTCGTGGGCACTATTTCTGCACGAGAGAGAAAAAAAAAG
TCCTACGAGTGCGCAATCATGTGAGGTGTACGCGTGGGGGTGCCCGGAGG
AGGGCGGAAAGCTACAAGGACTAGCCGTGGACACATCTGGTTCGTGTTAG
CACATCCCTGTCCTAAACGATACCGCCCGGATGGTGCCATGAGCAAGGGG
TCAAATCGCGAGTTTTTTTTGTTATGGGCACAGTCCCGGGGGGGGGATGT
CGACCGCTCTGACGCTCTTGGGGTCTGTGCTATCATAGGGGTAAGAGCCA
ACGACCCCCCGTCTCCAGAAAGAGGCATGAAAGGGCATACGAGTTTCCCA
CTTCCTCTACCACGCACGCCCCCCGGTGTTTGCCATCGGAGTTGGGTTTT
CGTCGCTTGGCAACGACCTTGTAAAAGAAGCCGCGTGAGCTCGACAAGCA
GGTTACCGGGGGGGGGTTCCTACGTTGTTTTTTTGCCGAAGCCGTAGTGG
TGGTCGAGTGTTAATAGATCATGTTGTGCGGGGTCGAGAACCCTCACTCC
GCTCGAAAGGGGATGATCGCACCACGTTGTGTCAATATGGTCAAGCACCC
TCGAGGCAGTCGCACAGTGCTTACAACTGTCTCAGGAAGTGAAAGCACCA
GAAAATAAATCAAGTCATACGCAGCTGTCATCCGTACGCAAGGAAGTAAG
CACAAGATGCCGAACACCCTTAGCAGGATACAGCGCACCCTTCACACGGC
TCGCCGAATACCTCACATCGCTGCGCGCTTGGTCATGTGAGAGCCTGATC
CGGTGAGAAACCGGCGTGCTCCGTCCCGGCTTCGTAGGGATGCGAGATCG
ATGGCCAAACGACTACGGCATGCACGACGATGAGTGCCCCCCTCTACCAC
ACTTCTGCGGTTGCCCCCCGACACCCTCATTTACTCTAAGAGGCTTCTAA
GCGCGTGAAGCTTTTCACTTCGGTACATCAGAGGAGGGTTCTGGTTAAAT
CGCGTCAGCCCGTGTGTCCTTCCCCCCGTCGCCCGCCCTCATGTTTTGCG
GAACTCCACACTTGACGCACAGGTGTCTGCGGCGGTCAAGCAGATCAGCG
ACCCGGCTAAGGTGTGGGAGAGGAACGTCGAAACCACGAGGAAGCTTGGC
GTGGAAGCCATGCGTCGTGGGGTAGAGGCGTGCCTTTTGCCCTCCTGGCC
ACCGCAGCAGACGCCGAAGGAAGCAAAAACAGACCTGGAGGAGAGGAACG
AGCGATGATGGCGTTCTCTTGCAATTGCGTCTCAAACCCATTTTTCTTTG
TGCATGTGCGGCGGATCCGTTGCACGTCGGTTTCATCCTGTAAGGGGAGG
CGAGTCATCGCTGCTGTAGACTGTTGGTCGATGGAGCGGGCAGGTAGATC
GCCCGCCCTTTCGACTCGCCGCGACGTAGGCCCTAAACAGAGTCGTGGCA
AAGAGGGTGCCTTGTAAGAGGCAGCTCCGATGTGAGAGGGTTCGAATCGA
TTGCCGTGGACTCGACCTGCTTCGCATACACAGATGGGGTACACTACCCT
CTTTTTCCCGTACAAGAGAGGTTTCCGATTCAAGAGGGTCGAATCTAAGG
CCGTTGTCACGCCACCTTCTTATCTCGAAGCCACGACTGTAGATTGCTGT
GAAACAAGGCTGCTGGAAAAAGTCGGCCCCCAACTCTTTCGTCACCACTG
GTGCACAGTTTGATGCATGCATGATGCTATGGGCCCCAACGAACTCCACG
GCGTGCCTGGAATTTGTTTCTGGAGGAGCTTGTAATTGGTTCTCGATATT
TGATCACACGCTACAGCTCAGGGTCTTGCTGAGAAAAATAAGTAAAAAGG
GAATTGGTTAATTATT
back to top

Coding sequence (CDS) from alignment at Scaffold_170:214052..218917-

>EsuBft420_16a-0001 ID=EsuBft420_16a-0001|Name=EsuBft420_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1089bp|location=Sequence derived from alignment at Scaffold_170:214052..218917- (Ectocarpus subulatus male Bft15b)
ATGGGAAATCTCCTCTACAGTCCACTACGCGGCCACGCGACACCGCCATC
GGCCTTCTCCGCCGTCGTGCCCCGAGGGCTTCCAGCGTTCGTCTCATCAA
GCGTCCAGGTGCCGCCGGCACTGCTGTTGTTGCATCCGGCGTCTACATCT
AAGTCACCTCCTCGATATCATCCTCCGATTCGGAGCAGTGTCTCGCGCGG
AGGGTGTGGTGGAGTCAGGAGGGGATTTGCTTGCAGGAGGAAACTTCTTC
GTCGTGCCTCAGCAGACCAATCGTTGTTGCTGTGTTCACTCACCACGGAG
GCTTCCGATCAGGCTGCCAGCCCGTGCCCGGAAAATCCACGCTCTCCGCG
GCAAGAGAGGGACAACCGTGGCGACGCCATAGCGCAGGCCACTCTGCGCT
GGATCCGCTCCACCGTAGTAGGGCTAAACCTCTGCCCGTGGGCAGCCGGC
GCCCTTGTAGGCGGACAACTGCGAGTCCTTGTACACCCGGCGCAGCCGCC
TCTGCCAGCCGCTACCGACTACCACGAACGCCCCCCTGGTAGTGATGTCG
CCGGCGGCGTGACCGGGGACTCCGGCTCAAGCAGCGATGGGGTTGATCTG
TTGGAGGGCTTCGTGAAGGTGGCCGCGCGAGAGGCGGTGGCGCTGAGCGC
TCTGGGCGGGGAGGTCGCTGCTAACGCCACGACGCTGGTCGTAGCGAGGC
CGCCGCTAGCGCAAGGCTTTGAGGAGTTTCTTTCCGTGGCCGGGGCCGTG
GACGAATTCATTGACGAATCGGGTATGCGGGGCAAGGTCCAGCTGGCGAC
GTTTCACCCTCAGTACCGGTTCGAGGGCTCTGAGGAGGATGACGCGTCCA
ACTACACAAATCGATCCCCTTACCCCGTGCTGCACCTTCTACTGGAAGAC
CAGGTGTCTGCGGCGGTCAAGCAGATCAGCGACCCGGCTAAGGTGTGGGA
GAGGAACGTCGAAACCACGAGGAAGCTTGGCGTGGAAGCCATGCGTCGTG
GGGTAGAGGCGTGCCTTTTGCCCTCCTGGCCACCGCAGCAGACGCCGAAG
GAAGCAAAAACAGACCTGGAGGAGAGGAACGAGCGATGA
back to top