EsuBft420_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft420_14a-0001
Unique Name	EsuBft420_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_170	contig	Scaffold_170:203027..204638 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft420_14
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	71
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft420_14a	EsuBft420_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_170 203027..204638 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft420_14a-0001-exon	EsuBft420_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_170 203027..203034 -
EsuBft420_14a-0001-exon	agat-exon-29290	Ectocarpus subulatus male Bft15b	exon	Scaffold_170 203326..203601 -
EsuBft420_14a-0001-exon	agat-exon-29291	Ectocarpus subulatus male Bft15b	exon	Scaffold_170 204212..204638 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft420_14a-0001-cds	EsuBft420_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_170 203027..203034 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft420_14a-0001	EsuBft420_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_170 203027..204638 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_170:203027..204638-
coding sequence from alignment at Scaffold_170:203027..204638-

spliced messenger RNA

>EsuBft420_14a-0001 ID=EsuBft420_14a-0001|Name=EsuBft420_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=711bp|location=Sequence derived from alignment at Scaffold_170:203027..204638- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTATAAGAGACAGGCCCAACACGAGGCGGACCTCGATAAACGGCAA
GGCTGGCGGCGGTCGTACCGCATGGAGAAGGCTGTTCCACAAGCTTGTCA
NGCGCCAGCATCCCCAGGGGCCCGCAGCGCAACGCCGGGAGAAGCGCCGT
CTAGGAGCTATCGACGAGGTCGGTGAAGCCCAGGAACACAGGAGATCTCT
CACAGTCCCGGGTCTTCTGTGGTGGCGGCGGGCGTGGTGGCAGCAGGAGA
AGCTCATCGTGCCCACTGNGCCCATCTACGAGCCCAAGCGGCTTCCGTGG
GCCCAACACGAGGCGGACCTCGACAAACGGCAAGGCTGGCGGCGGTCGTA
CCGCATGGAGAAGGCCAGTTTCTACAAGCTTGTCGAGCTACTCCGCCCTT
CGCTGGCAGTCAACGCCTTCTTCGGCGCACTGCGATCGCCAATCAACGGC
GCCATAGCTGTAGAAGTCCGCGTTGCCGTGGCGTTGAGGATCCTGGCTGG
CACTAGTTACTGGGATGTTGCCCTCATGTTTGGCTTGTCGGTGCCGACCA
CGTACCAGAACTTGTGGTCGGTGATCGACGCCATCAACAAGACGCCTGCG
GTTGGGGCATTCGANAGGAAAACACCAAACGATATGCATGTCCGCAGATT
GCCGGCACGGCAGGTTACCCGCAAGACAGCAATGTCTTCGGCGTTCTTCC
ACCGAATCTAA

protein sequence of EsuBft420_14a-0001

>EsuBft420_14 ID=EsuBft420_14|Name=EsuBft420_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=236bp
MCIRDRPNTRRTSINGKAGGGRTAWRRLFHKLVXRQHPQGPAAQRREKRR
LGAIDEVGEAQEHRRSLTVPGLLWWRRAWWQQEKLIVPTXPIYEPKRLPW
AQHEADLDKRQGWRRSYRMEKASFYKLVELLRPSLAVNAFFGALRSPING
AIAVEVRVAVALRILAGTSYWDVALMFGLSVPTTYQNLWSVIDAINKTPA
VGAFXRKTPNDMHVRRLPARQVTRKTAMSSAFFHRI

mRNA from alignment at Scaffold_170:203027..204638-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft420_14a-0001 ID=EsuBft420_14a-0001|Name=EsuBft420_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1612bp|location=Sequence derived from alignment at Scaffold_170:203027..204638- (Ectocarpus subulatus male Bft15b)
ATGTGTATAAGAGACAGGCCCAACACGAGGCGGACCTCGATAAACGGCAA
GGCTGGCGGCGGTCGTACCGCATGGAGAAGGCTGTTCCACAAGCTTGTCA
NGCGCCAGCATCCCCAGGGGCCCGCAGCGCAACGCCGGGAGAAGCGCCGT
CTAGGAGCTATCGACGAGGTCGGTGAAGCCCAGGAACACAGGAGATCTCT
CACAGTCCCGGGTCTTCTGTGGTGGCGGCGGGCGTGGTGGCAGCAGGAGA
AGCTCATCGTGCCCACTGNGCCCATCTACGAGCCCAAGCGGCTTCCGTGG
GCCCAACACGAGGCGGACCTCGACAAACGGCAAGGCTGGCGGCGGTCGTA
CCGCATGGAGAAGGCCAGTTTCTACAAGCTTGTCGAGCTACTCCGCCCTT
CGCTGGCAGTCAACGCCTTCTTCGGCGGTGAGTGTTGATGTGTAAATGCA
GCCGCCCACGGCAGGTATGCGTAAGGCTTCCTCTCATGTATACGTAGGGA
ACAACGGGGAAGAGCAAGTCTAAAACCCAGGAAAAACACTACTGCTGTAC
ATGCCTTGCTGTTTGTCTGCTATCTTTTTCAAAANTATTCTACAGCAGTA
GGTACAGCAGTGTCTGCATATGCATACAGCAGCAGTCGTTGTATGGGAAC
GACAGGAAGGTACTATGGTGGCGCTGAAATAAGTTCAGCAGTATGAATAG
AGCGTGCAACACACGCCGGCACCACTATACATTATACATGCCTCGTCGGG
AGCCTACACAGGTTGTCGTATCCCGCAATGATAGCATACAAGAGTCGCCA
CGTGCTCCTCATATGCATATGCGATGTTAGTTGTGTGTTCCGTGGAAGAA
CACAGAGCCGTCTTACAACCCGAGTCGGGAGGTGTATTGGGCCGGTACTC
CGGCGAGTTTAACGATGGCATGCGTCCTTTGACGCTGGCGATTGCAAATA
CACCCCCTATGACACTGGTACATATTTCCTGACCGACACACGCTCATCCT
TTGAACATTTTCTGCGCGTCGCTCCGAAACCCCACAGCACTGCGATCGCC
AATCAACGGCGCCATAGCTGTAGAAGTCCGCGTTGCCGTGGCGTTGAGGA
TCCTGGCTGGCACTAGTTACTGGGATGTTGCCCTCATGTTTGGCTTGTCG
GTGCCGACCACGTACCAGAACTTGTGGTCGGTGATCGACGCCATCAACAA
GACGCCTGCGGTTGGGGCATTCGANAGGAAAACACCAAACGATATGCATG
TCCGCAGATTGCCGGCACGGCAGGTTACCCGCAAGACAGCAATGTCTTCG
GCGTTCTTCCACCGTATTTTTTCGTTGATACTCCTTTGTTGCCGCAAGGC
ATCCTCTCAAAGTGTTGTTGCCAACCAAACAACCCACACGTCTCTGCGGA
GGCGCACGTATCCTCAATGCTGCGACGAAACGGAGACGTTGACTCAACCA
TGCCCAAATATGAAAATAAAACTACCCCCCGCCCCCCCCCCGTCACGCAT
GCATAAAATTCGACGATTGCACGGTAACACTTTTCCGGGAGTGCATATGG
GTGTTATTCGTCGCCAAACATTTCCTTCTCGATGCCGGCCAACATTTTGC
GCAGGAATCTAA

Coding sequence (CDS) from alignment at Scaffold_170:203027..204638-

>EsuBft420_14a-0001 ID=EsuBft420_14a-0001|Name=EsuBft420_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=711bp|location=Sequence derived from alignment at Scaffold_170:203027..204638- (Ectocarpus subulatus male Bft15b)
ATGTGTATAAGAGACAGGCCCAACACGAGGCGGACCTCGATAAACGGCAA
GGCTGGCGGCGGTCGTACCGCATGGAGAAGGCTGTTCCACAAGCTTGTCA
NGCGCCAGCATCCCCAGGGGCCCGCAGCGCAACGCCGGGAGAAGCGCCGT
CTAGGAGCTATCGACGAGGTCGGTGAAGCCCAGGAACACAGGAGATCTCT
CACAGTCCCGGGTCTTCTGTGGTGGCGGCGGGCGTGGTGGCAGCAGGAGA
AGCTCATCGTGCCCACTGNGCCCATCTACGAGCCCAAGCGGCTTCCGTGG
GCCCAACACGAGGCGGACCTCGACAAACGGCAAGGCTGGCGGCGGTCGTA
CCGCATGGAGAAGGCCAGTTTCTACAAGCTTGTCGAGCTACTCCGCCCTT
CGCTGGCAGTCAACGCCTTCTTCGGCGCACTGCGATCGCCAATCAACGGC
GCCATAGCTGTAGAAGTCCGCGTTGCCGTGGCGTTGAGGATCCTGGCTGG
CACTAGTTACTGGGATGTTGCCCTCATGTTTGGCTTGTCGGTGCCGACCA
CGTACCAGAACTTGTGGTCGGTGATCGACGCCATCAACAAGACGCCTGCG
GTTGGGGCATTCGANAGGAAAACACCAAACGATATGCATGTCCGCAGATT
GCCGGCACGGCAGGTTACCCGCAAGACAGCAATGTCTTCGGCGTTCTTCC
ACCGAATCTAA