EsuBft420_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft420_12a-0001
Unique NameEsuBft420_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_170contigScaffold_170:196640..199053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft420_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length160
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft420_12aEsuBft420_12aEctocarpus subulatus male Bft15bgeneScaffold_170 196640..199053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_12a-0001EsuBft420_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_170 197365..198028 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_12a-0001-exonEsuBft420_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_170 196640..196980 +
EsuBft420_12a-0001-exonagat-exon-29286Ectocarpus subulatus male Bft15bexonScaffold_170 197305..197442 +
EsuBft420_12a-0001-exonagat-exon-29287Ectocarpus subulatus male Bft15bexonScaffold_170 197924..199053 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_12a-0001-exonagat-five_prime_utr-9840Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_170 196640..196980 +
EsuBft420_12a-0001-exonagat-five_prime_utr-9841Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_170 197305..197364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_12a-0001-cdsEsuBft420_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_170 197365..197442 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft420_12a-0001-exonagat-three_prime_utr-15461Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_170 198029..199053 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft420_12a-0001 ID=EsuBft420_12a-0001|Name=EsuBft420_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1609bp|location=Sequence derived from alignment at Scaffold_170:196640..199053+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTGACGTCTTTTCATTGGCCAGCGGATTTTCGGGGTCGATGCTATTATTT
CAATGAAAAGGACACACACACACCGCCGACAAATGACTCCTTTTTTTGTG
TCCCTGCCTCGACCGATGCCTTCACGGCCCCTCTTCCTCCAAACGATAAT
CGCTTCCGGGGAACAACACGGACAAAACTGCCCACACTACCTCTTGCACA
CGAAAAGCGTGGTTCCCTCGCCTCGAGTCTGACGAGATTGTGGTCGTCGG
GCGACTGGAGGATGCGGTGAGGCGGGCGGAGGAGAAGATCCGCTTGCACC
CCTCCCCGCCCTACGTCGGCCAAAGCACGCCGGAGGAAGAGGACGACGCA
ACTGCCGACGAGGACGACAACCAGGAGGAGAAGACCAGGGACACCCAAGA
CATGGCGGCGCCGAGAGAGGGCGACGAGGCAGTGGCAGCGGTGGCGGCTG
CAGCGGCGGCGCAGGCGACGCAAGTAGCGGATGAGCCGTCTACGGGGGTT
GAGGGTGCCATGATGGACGACGACGACGACGACGACGACGATCAAGCGGG
AGAAGACGACGAATCGGGGCAACCAGACTACTGACTGAAAACAGCCAACC
TCAACCGGGTTCCCGCCCAGCTATAGTAGTCCCCTCGCTCGCTTCTGACT
GGGTGATGCGGCGGGCGGATGGCTGGCTGTACAGGCAGGACAGGACCATG
CTCACATGCGATACAGAAGTCGCGATCTGACGAAGGACGAGTGGAAGCAC
TACACCGTATCAGCGTCTGATTTCTCGTGGATGCGGCGGACGCTGACATC
AATTAGGCGTTTCTCAAGTGTTGTGTAGGCGTTGAGCCAGCTCCGGGACG
GGTCCGCCTTGTCTCTATATGTGCTGTCTGAGGTTCGTTGCAACATCGAA
TTATAGTGGTTCGTCACACATTTGTTTTGTTGTGTGGGCAATGTTGCCGT
TTTAGTATGCGTTGAAAAGGCCGTGCAAAAGGGAGACGGATCACCCAACC
CCGAGGACCAAGCAATCAGGGGAGTTCCACTTCGGCAATCCGCGAATTGG
GCCGGGGGGGTCTCTCTTGTGTATGATTGTGTAGTTTTTTTTTGTGACAC
GTCGCTCTTTCGCAGAAGTTGCACGTTTTATCAATGATGGGGGGGACTTG
TCTGGGTGAACACGCTTCTTGGCATGCTGGTATGACATTTATTGAGGCTT
GGGGCTGTGCAAAAATATTAGGCTTTTGGCCGTGTTCTTGTTGGTTGGTG
AAGAAAAACTCGCTGTTCCAGCGCTTGATTCTTGGCATTCAGGTATCTGT
TGACGCTTAGGGCCGTTCGTGTATTGGTTGTCAAAGCACAAGTTGTTGTG
CTCGCGCTCAATTTCCTGGTGTCCCGGTGAGGAGGAGGCGTCTATCTGTT
CAGGAATAGGAGCGGGGTTCCGTGTCATAATCTCTGTGTACCGTACTGCC
GTCGTCGTTGTCGACGTCGTGCCTTTTGCCGCCCATTTTTCCTGCTGTGT
CTGAAGATTGATTCCAACTCGGTGAGGTGATATCCCTCCACCCCCAGTCA
CCCCCAGTCTAGACGACCTCTAACACTTTTTGCGTGGTTCTCTGAAAAGC
CACAGACCC
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protein sequence of EsuBft420_12a-0001

>EsuBft420_12 ID=EsuBft420_12|Name=EsuBft420_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=60bp
MAAPREGDEAVAAVAAAAAAQATQVADEPSTGVEGAMMDDDDDDDDDQAG
EDDESGQPDY
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mRNA from alignment at Scaffold_170:196640..199053+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft420_12a-0001 ID=EsuBft420_12a-0001|Name=EsuBft420_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2414bp|location=Sequence derived from alignment at Scaffold_170:196640..199053+ (Ectocarpus subulatus male Bft15b)
CTGACGTCTTTTCATTGGCCAGCGGATTTTCGGGGTCGATGCTATTATTT
CAATGAAAAGGACACACACACACCGCCGACAAATGACTCCTTTTTTTGTG
TCCCTGCCTCGACCGATGCCTTCACGGCCCCTCTTCCTCCAAACGATAAT
CGCTTCCGGGGAACAACACGGACAAAACTGCCCACACTACCTCTTGCACA
CGAAAAGCGTGGTTCCCTCGCCTCGAGTCTGACGAGATTGTGGTCGTCGG
GCGACTGGAGGATGCGGTGAGGCGGGCGGAGGAGAAGATCCGCTTGCACC
CCTCCCCGCCCTACGTCGGCCAAAGCACGCCGGAGGAAGAGGTGCGCCAA
CCAGGGGCAGATGGCCCCCAAGTGCACCTTTGCCTTGACAGCGCTCCCCA
TGCCTCGCTCTTGGCGGCAATAGTCCACCTGAGACTGGCGAGCTGGAAGC
TCTTGATGTTGTGTCGGTATACCAGGATGTACTTGTAGCGTTCCCTTTTT
TTTCGGAAGCTGTAGGTACCATGGTGGCCTACGACGTGCCGCCGTCGCAG
GACCCTGCTGAATATTTTTTCACATGACGACCCCTTGTCGAACCAATCCC
CCGCGTTGCCGCCCGAGAGAATTGACCGCCGCATTTTATTTGCCGTCGCC
TGCGGCGCAATGAAGGACGACGCAACTGCCGACGAGGACGACAACCAGGA
GGAGAAGACCAGGGACACCCAAGACATGGCGGCGCCGAGAGAGGGCGACG
AGGCAGTGGCAGCGGTGGCGGCTGCAGCGGCGGCGCAGGCGACGCAAGTA
GCGGTGAGCGGTGGCTTGGTTGCTGGGTACAGAGCATAGGCCGCGTGCGA
TGTGACGATATCGTTCCCACCGGATTGTTGTCAGCGAACGGTCAACGTAG
TTCTCGGGCTCGGAAATGTTTTGCGGGGGAACATGGGAGATCCGCAACAG
TGAAGAGAATTGGTGTTTTAGCGAGTGACCAACGCGCCCCTTTCGCATGC
CTTACAGGCATTATCAACGACCTCTTTTGTATCTCACTCATTGTTGAGAG
GGGGTCACCCAGCTGCAATATCGTCGGAGGTGTCCGTCCTGTCACAGCTG
GTGCGCAGGTTGTCTAGCTCGGCGAATAAGCCCCACCACGGCAACTCAGT
CTCTCTGCTAACGCGCTCTGACTACATCGCGCTGTCAGCTTGTTTTCGCC
CTCAGGTCGTGCAGCTCAGCCTCGCGTACTTTTTCACGTCCGCTTGTGCT
CGGATGGACGCTTCAATTCATGTAAACGAAACAGGATGAGCCGTCTACGG
GGGTTGAGGGTGCCATGATGGACGACGACGACGACGACGACGACGATCAA
GCGGGAGAAGACGACGAATCGGGGCAACCAGACTACTGACTGAAAACAGC
CAACCTCAACCGGGTTCCCGCCCAGCTATAGTAGTCCCCTCGCTCGCTTC
TGACTGGGTGATGCGGCGGGCGGATGGCTGGCTGTACAGGCAGGACAGGA
CCATGCTCACATGCGATACAGAAGTCGCGATCTGACGAAGGACGAGTGGA
AGCACTACACCGTATCAGCGTCTGATTTCTCGTGGATGCGGCGGACGCTG
ACATCAATTAGGCGTTTCTCAAGTGTTGTGTAGGCGTTGAGCCAGCTCCG
GGACGGGTCCGCCTTGTCTCTATATGTGCTGTCTGAGGTTCGTTGCAACA
TCGAATTATAGTGGTTCGTCACACATTTGTTTTGTTGTGTGGGCAATGTT
GCCGTTTTAGTATGCGTTGAAAAGGCCGTGCAAAAGGGAGACGGATCACC
CAACCCCGAGGACCAAGCAATCAGGGGAGTTCCACTTCGGCAATCCGCGA
ATTGGGCCGGGGGGGTCTCTCTTGTGTATGATTGTGTAGTTTTTTTTTGT
GACACGTCGCTCTTTCGCAGAAGTTGCACGTTTTATCAATGATGGGGGGG
ACTTGTCTGGGTGAACACGCTTCTTGGCATGCTGGTATGACATTTATTGA
GGCTTGGGGCTGTGCAAAAATATTAGGCTTTTGGCCGTGTTCTTGTTGGT
TGGTGAAGAAAAACTCGCTGTTCCAGCGCTTGATTCTTGGCATTCAGGTA
TCTGTTGACGCTTAGGGCCGTTCGTGTATTGGTTGTCAAAGCACAAGTTG
TTGTGCTCGCGCTCAATTTCCTGGTGTCCCGGTGAGGAGGAGGCGTCTAT
CTGTTCAGGAATAGGAGCGGGGTTCCGTGTCATAATCTCTGTGTACCGTA
CTGCCGTCGTCGTTGTCGACGTCGTGCCTTTTGCCGCCCATTTTTCCTGC
TGTGTCTGAAGATTGATTCCAACTCGGTGAGGTGATATCCCTCCACCCCC
AGTCACCCCCAGTCTAGACGACCTCTAACACTTTTTGCGTGGTTCTCTGA
AAAGCCACAGACCC
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Coding sequence (CDS) from alignment at Scaffold_170:196640..199053+

>EsuBft420_12a-0001 ID=EsuBft420_12a-0001|Name=EsuBft420_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=183bp|location=Sequence derived from alignment at Scaffold_170:196640..199053+ (Ectocarpus subulatus male Bft15b)
ATGGCGGCGCCGAGAGAGGGCGACGAGGCAGTGGCAGCGGTGGCGGCTGC
AGCGGCGGCGCAGGCGACGCAAGTAGCGGATGAGCCGTCTACGGGGGTTG
AGGGTGCCATGATGGACGACGACGACGACGACGACGACGATCAAGCGGGA
GAAGACGACGAATCGGGGCAACCAGACTACTGA
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