EsuBft419_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft419_5a-0001
Unique NameEsuBft419_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:21246..22084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft419_5
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length58
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft419_5aEsuBft419_5aEctocarpus subulatus male Bft15bgeneScaffold_360 21246..22084 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_5a-0001-exonEsuBft419_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 21246..21341 +
EsuBft419_5a-0001-exonagat-exon-28310Ectocarpus subulatus male Bft15bexonScaffold_360 21599..22084 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_5a-0001-exonagat-five_prime_utr-9798Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_360 21246..21341 +
EsuBft419_5a-0001-exonagat-five_prime_utr-9799Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_360 21599..21859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_5a-0001-cdsEsuBft419_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 21860..22084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_5a-0001EsuBft419_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 21860..22084 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft419_5a-0001 ID=EsuBft419_5a-0001|Name=EsuBft419_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=582bp|location=Sequence derived from alignment at Scaffold_360:21246..22084+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGAAACACAGTCTCCGTTTGCGCACGGTGGCCTCGATGGTTTCCTCGCAG
CCTGCCTGGATGAGGGCCTGGGCATAGGACAGGGGGCGGTCTGAGCCGTT
TCCGCTTGCTCCAGCCGATGCACCGTGTGAGGAACTGGCGGTGGGTCCCA
TTGAGCTTCGTGTAGTGCTCCGCTGTTAGGCTCCACGAGGCGCACCCATA
TAGGAGAGTCTGCACCACTTCAGCCTGGAGTAGCCGGATCTTGAGCTGGC
GGTCGGCCCGTCGCCTGTCGTACATCGAAGCACTGTTCCGGCGGTAGCAC
TTCCACGCTCGGCAGCTGCGGCTCGTGATCTCCCGGTCGGCCTTCCCGTC
CGCGGAGATGGTACGTCCGAGGTACACAAACCGATCTGTCTGCTTGTACG
CCTGGCCGGCGGCGCTGACCGTGAACGGGCGTTCCTCCATCCCTTTCGGC
AGCATGCACATGATCTCAGTCTTTGGCTCCGATGCCATCAGTCCGAACAG
GCCGGCCACGCGCACGATGACCGACATCATCTTCTCGAGACTCTCCGGTG
AGCGCGAGACGATGGCCGCGTCGTCAGCGTAG
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protein sequence of EsuBft419_5a-0001

>EsuBft419_5 ID=EsuBft419_5|Name=EsuBft419_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=74bp
MVRPRYTNRSVCLYAWPAALTVNGRSSIPFGSMHMISVFGSDAISPNRPA
TRTMTDIIFSRLSGERETMAASSA
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mRNA from alignment at Scaffold_360:21246..22084+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft419_5a-0001 ID=EsuBft419_5a-0001|Name=EsuBft419_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=839bp|location=Sequence derived from alignment at Scaffold_360:21246..22084+ (Ectocarpus subulatus male Bft15b)
CGAAACACAGTCTCCGTTTGCGCACGGTGGCCTCGATGGTTTCCTCGCAG
CCTGCCTGGATGAGGGCCTGGGCATAGGACAGGGGGCGGTCTGAGCGTTT
CCGCTTGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCAGCATGCGCTTGGGGAGGCGGTTGTCCTCCATGCGCATAAC
GAAGCCCGCGAAACACAGTCTCCGTTTGCGCACGGTGGCCTCGATGGTTT
CCTCGCAGCCTGCCTGGATGAGGGCCTGGGCATAGAACAGGGGGCATTCT
GAGCGTTTCCGCTTGCTCCAGCCGATGCACCGTGTGAGGAACTGGCGGTG
GGTCCCATTGAGCTTCGTGTAGTGCTCCGCTGTTAGGCTCCACGAGGCGC
ACCCATATAGGAGAGTCTGCACCACTTCAGCCTGGAGTAGCCGGATCTTG
AGCTGGCGGTCGGCCCGTCGCCTGTCGTACATCGAAGCACTGTTCCGGCG
GTAGCACTTCCACGCTCGGCAGCTGCGGCTCGTGATCTCCCGGTCGGCCT
TCCCGTCCGCGGAGATGGTACGTCCGAGGTACACAAACCGATCTGTCTGC
TTGTACGCCTGGCCGGCGGCGCTGACCGTGAACGGGCGTTCCTCCATCCC
TTTCGGCAGCATGCACATGATCTCAGTCTTTGGCTCCGATGCCATCAGTC
CGAACAGGCCGGCCACGCGCACGATGACCGACATCATCTTCTCGAGACTC
TCCGGTGAGCGCGAGACGATGGCCGCGTCGTCAGCGTAG
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Coding sequence (CDS) from alignment at Scaffold_360:21246..22084+

>EsuBft419_5a-0001 ID=EsuBft419_5a-0001|Name=EsuBft419_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=225bp|location=Sequence derived from alignment at Scaffold_360:21246..22084+ (Ectocarpus subulatus male Bft15b)
ATGGTACGTCCGAGGTACACAAACCGATCTGTCTGCTTGTACGCCTGGCC
GGCGGCGCTGACCGTGAACGGGCGTTCCTCCATCCCTTTCGGCAGCATGC
ACATGATCTCAGTCTTTGGCTCCGATGCCATCAGTCCGAACAGGCCGGCC
ACGCGCACGATGACCGACATCATCTTCTCGAGACTCTCCGGTGAGCGCGA
GACGATGGCCGCGTCGTCAGCGTAG
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