|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G873 |
| ProteomeId | EsuBft419_4 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 78 |
| Evalue | 3.43e-05 |
| EggNOG OGs | COG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG rclass | RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496 |
| KEGG ko | ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437 |
| KEGG Reaction | R00851,R03875,R03938,R04866,R04867,R09380 |
| KEGG Pathway | ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202 |
| KEGG Module | M00089 |
| EC | 2.1.1.43,2.3.1.15,3.6.4.12 |
| Description | acetylation-dependent protein binding |
| COG category | BK |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft419_4a-0001 ID=EsuBft419_4a-0001|Name=EsuBft419_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=780bp|location=Sequence derived from alignment at Scaffold_360:16897..18483- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGATGCAGGGACAAAGCTGAAGATCAAACTCAGGACCGGGGACATTGG
TCTTCGAGAACGTAGCCGAAGGCTTCGGAAGGTAGACGATGAAGACGCCA
AGTTCAAATGTGATTGCGGCTCCGAGTGCGAAGACCGTGTTCATGAAGTC
GCGGAATGTGGGCTGTACAAGGAGAGGGAAAGTGTGAACGAGGAGCTTGT
CAAGGCCTCCGGGGGCGGCGGCGACGCGGGCGTGCGCGTGTCCAAGCGCA
AGAAGAATCAGCCCAAGAAACAGAAGCGACCGAAGGCTGGTGCTGGTGCT
GCTACGGCTGGTGCTGGTACCACTTCTACAGCAGCAGCAGCGGCAGCATC
AGCAGCAGCAGCAGCAGCAGGGGTTCGTTTCCACGGGGGCAGTGGGACGG
TGGGCGGGAAGGGGGGGATCTGCAGAGAGGAGTTCAATGTCGGTACCCAC
ACCGCGAAGAGGGCGTCCGCACGAGCGCGCAAGATCAAACGGGCGAATAG
GTCGTCGTGTGCGTCGTGCGCGGTGGCGGTGGGGGCGCCGGAGGCGGCAG
AAGTACGAGGGGAGCCTCTTTCTGCGGCTGCGAGCAACGTTCACCATCAC
CTCGTCGACACCTTCTCCCGACGGCAACAGAACGAGAAGAACAGAGGTCC
ATCTTCCAACGGAGGCAAGAAAATGGTAAGGGCGGCTAGCGGCGGTGTAA
GCCGGGCGATGATGCCTCGGAGGTCTTCGGCGCCGTCTGCAGCGGCGGCG
GAGGCGGTCGGGGGGGGGGCGGGGGNNNNN back to topprotein sequence of EsuBft419_4a-0001 >EsuBft419_4 ID=EsuBft419_4|Name=EsuBft419_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=260bp
MDAGTKLKIKLRTGDIGLRERSRRLRKVDDEDAKFKCDCGSECEDRVHEV
AECGLYKERESVNEELVKASGGGGDAGVRVSKRKKNQPKKQKRPKAGAGA
ATAGAGTTSTAAAAAASAAAAAAGVRFHGGSGTVGGKGGICREEFNVGTH
TAKRASARARKIKRANRSSCASCAVAVGAPEAAEVRGEPLSAAASNVHHH
LVDTFSRRQQNEKNRGPSSNGGKKMVRAASGGVSRAMMPRRSSAPSAAAA
EAVGGGAGXX back to topmRNA from alignment at Scaffold_360:16897..18483- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft419_4a-0001 ID=EsuBft419_4a-0001|Name=EsuBft419_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1587bp|location=Sequence derived from alignment at Scaffold_360:16897..18483- (Ectocarpus subulatus male Bft15b)
ATGGATGCAGGGACAAAGCTGAAGATCAAACTCAGGACCGGGGACATTGG
TCTTCGAGAACGTAGCCGAAGGCTTCGGAAGGTAGACGATGAAGACGCCA
AGTTCAAATGTGATTGCGGCTCCGAGTGCGAAGACCGTGTTCATGAAGTC
GCGGAATGTGGGCTGTACAAGGAGAGGGAAAGTGTACATGACTGAGCTGG
GGAAATGCAAGGGAGGTGCAGGGAGATGTTTGAGGTATGGGATAGCCAGG
AGACGACGTTAGCTGTATTGGGGCATAGGAAGTGGAATGAAAAGGTGGGA
AGTGATATCCGTAGGATAGATAGACTAGGGAAGACATTTTTGAGCCACCT
TTGGCAAAGTAGGAAGGAACGATTGGCCATCGGTGATCGGTTCTGTGGGA
ACAAATGCTCCGTCCTCTCGAGGACGCGTGGCCAATGGTCGAACCGCTAA
GGCATGCAAAACGTAAGAGCACGCCCCCTTCCCCATCGCCCCCCCCCCCG
CCCGTCCGGACGCCATCCAAGGTGAACGAGGAGCTTGTCAAGGCCTCCGG
GGGCGGCGGCGACGCGGGCGTGCGCGTGTCCAAGCGCAAGAAGAATCAGC
CCAAGAAACAGAAGCGACCGAAGGCTGGTGCTGGTGCTGCTACGGCTGGT
GCTGGTACCACTTCTACAGCAGCAGCAGCGGCAGCATCAGCAGCAGCAGC
AGCAGCAGGGGTTCGTTTCCACGGGGGCAGTGGGACGGTGGGCGGGAAGG
GGGGGATCTGCAGAGAGGAGTTCAATGTCGGTACCCACACCGCGAAGAGG
GCGTCCGCACGAGCGCGCAAGAGTGAGGGAGCGGGTTCTGTCTGTTTTGT
TTCGATCACACGCTGTCCCATCTGTTGCGACGCATGTACAGGGCTCCGCC
AATCGCTTTCGAAGAGATGGCCATCAGTGTACGAGCCCCCCCNCCCCCCC
CCCCCCCGAATGACTTGGTTGGGCCAATTTTGTTCACTGGTCGGGAGGGA
GCTCGTGGTACATGCATGCTGACTGAATCGATGAGAACTGGATTGTTGGT
GCGTAGTTCGACAGACGTTGTTTTGTTCGTTTCTCTTCTCGTCGACAATT
TTGATTTATGAATCAGCTTGGTAAAATGCCACCCACACCGTCACCGATTC
CCTTATGATTGTACTCTTTTTCCCCTCGTTTTCGACCCCCCCCCCCCCCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTCGCAATACAATATCACAAAACATAAAAGTCAAACGGG
CGAATAGGTCGTCGTGTGCGTCGTGCGCGGTGGCGGTGGGGGCGCCGGAG
GCGGCAGAAGTACGAGGGGAGCCTCTTTCTGCGGCTGCGAGCAACGTTCA
CCATCACCTCGTCGACACCTTCTCCCGACGGCAACAGAACGAGAAGAACA
GAGGTCCATCTTCCAACGGAGGCAAGAAAATGGTAAGGGCGGCTAGCGGC
GGTGTAAGCCGGGCGATGATGCCTCGGAGGTCTTCGGCGCCGTCTGCAGC
GGCGGCGGAGGCGGTCGGGGGGGGGGCGGGGGNNNNN back to topCoding sequence (CDS) from alignment at Scaffold_360:16897..18483- >EsuBft419_4a-0001 ID=EsuBft419_4a-0001|Name=EsuBft419_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=780bp|location=Sequence derived from alignment at Scaffold_360:16897..18483- (Ectocarpus subulatus male Bft15b)
ATGGATGCAGGGACAAAGCTGAAGATCAAACTCAGGACCGGGGACATTGG
TCTTCGAGAACGTAGCCGAAGGCTTCGGAAGGTAGACGATGAAGACGCCA
AGTTCAAATGTGATTGCGGCTCCGAGTGCGAAGACCGTGTTCATGAAGTC
GCGGAATGTGGGCTGTACAAGGAGAGGGAAAGTGTGAACGAGGAGCTTGT
CAAGGCCTCCGGGGGCGGCGGCGACGCGGGCGTGCGCGTGTCCAAGCGCA
AGAAGAATCAGCCCAAGAAACAGAAGCGACCGAAGGCTGGTGCTGGTGCT
GCTACGGCTGGTGCTGGTACCACTTCTACAGCAGCAGCAGCGGCAGCATC
AGCAGCAGCAGCAGCAGCAGGGGTTCGTTTCCACGGGGGCAGTGGGACGG
TGGGCGGGAAGGGGGGGATCTGCAGAGAGGAGTTCAATGTCGGTACCCAC
ACCGCGAAGAGGGCGTCCGCACGAGCGCGCAAGATCAAACGGGCGAATAG
GTCGTCGTGTGCGTCGTGCGCGGTGGCGGTGGGGGCGCCGGAGGCGGCAG
AAGTACGAGGGGAGCCTCTTTCTGCGGCTGCGAGCAACGTTCACCATCAC
CTCGTCGACACCTTCTCCCGACGGCAACAGAACGAGAAGAACAGAGGTCC
ATCTTCCAACGGAGGCAAGAAAATGGTAAGGGCGGCTAGCGGCGGTGTAA
GCCGGGCGATGATGCCTCGGAGGTCTTCGGCGCCGTCTGCAGCGGCGGCG
GAGGCGGTCGGGGGGGGGGCGGGGGNNNNN back to top
|