Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft419_3 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 145 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-01_004260.2 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft419_3a-0001 ID=EsuBft419_3a-0001|Name=EsuBft419_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1454bp|location=Sequence derived from alignment at Scaffold_360:13055..15325- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTTCCACGACCGACCGCCTCGGCGTCGAAGGACTTCTCGGTCCAAGAG
CGGCGGCGGGGCAGGGATGGCGGCGGCGGCGGTGGGAGGACGGGGAGCGA
GGAAACGGGGCGGCGGCCTCGGCGGCGGTCGCGCTGTGCTCGACGTGGCC
CTGCCAGATGTGCAGGGCCTGAGTCTGGCGGCATCGACCAGCGGCTCATC
ATCTCGCAAAGACAGCAGTGACGACGACGGGGACGACGATGACAGTGGGT
ACGATGACCGAGATCGAGGTATCTCGGCCAGCCGAGAGCGGTGGACGAAG
GAGTGGAATCGAGCCATCGGCGCCGGCGACGACGATGACGGTCCCGGGCC
GGCAAGAGCAGGAGGTGATCGGCGGCACGGACACCAAGAGGACGCCGCTG
CTGCTTCTGTAGCGGTGGGGATGGAGACCCCCTCCACGTCGTTGACGAGA
AGGAAGAGAAGGAGTAAGAGGAGGGCGGCACCATCACGGGTGACCGTTCT
GGAAAACGAAGATGGCGGCAGACTTCTTGCAGCCGCAGCAGCAGCAGCAG
GAGAAGGGCGGCATGGGGGGTTGGGTAGCACGCAGCAAATGCAGTATGGG
TTTGAGACGATCGGGCGCGGGCGGGGCCCAGTGGACGAGGAGGAGGAGAA
GGAGGAGGAGGAGGAACAAGAGAGCGGGTACGGGGGGTCCTCCGAAGGAA
CATTTGAACCTGGGGGGGGCAGGTGGGGTGGGGTGGGTGGAAGCCAAGGC
CGTTATCGTGACGAAGAAGAGAAGGGGGAAGAGGAGGATGAGGAGGAAGA
GGACGACAGCTCGGAAACAGGAAGCGAGGGCGTGGGCGTGAGCGGGCTGC
CGATCGGCGAGGCTAGCCTGTCCTCTGGGGACGAGAGGATCTGGAGAACC
GCTGGTAGCAGAGCTTGAAGGAAGCCGCGGCGGATGTATAAGTAAAAAAA
CGTTAGTCGTGTATTTGAATACAGCAGTGAGTGAGGGTTGATGGAAAAGG
GACCCAATCCTTGCGGGACAGCCATAAACCAACAACACCACACCGGATAA
CACACTTTCATGTGTGCCACACAAACCACGCAACCGTTTGGATGGTATGG
GTGCATTTTTACTGTGTCGGCAAGGAAGGTTAGTCAGGATTTGTTGTGTC
TTTGCACTCCGTTCGTGTCTATTTATTTAGTGGTTGGTTTAAGACCAAAG
TATTCTGTGGGTTGGGGAGTAAGGGAAGATCTATAAGAGCATTATTTCTG
TAGCATTTGGATTTCCGTGTATCTAATATTGTTGTAGCTTAGGCTTTGTG
CCCCCAAGCGCAGAGAAGCAACCGAATCGAGGTGACGTACAATAGTATTT
ACAACGTGGTCAGCTCTGGTGCCGTTAGCGCCAAGCATGCTTGTTGCTGC
CTGCAGCAGTCTCCCGTCCATGGTATTTTTCTCATTTTGCGAGGATATCA
CGCG back to topprotein sequence of EsuBft419_3a-0001 >EsuBft419_3 ID=EsuBft419_3|Name=EsuBft419_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=305bp
MFHDRPPRRRRTSRSKSGGGAGMAAAAVGGRGARKRGGGLGGGRAVLDVA
LPDVQGLSLAASTSGSSSRKDSSDDDGDDDDSGYDDRDRGISASRERWTK
EWNRAIGAGDDDDGPGPARAGGDRRHGHQEDAAAASVAVGMETPSTSLTR
RKRRSKRRAAPSRVTVLENEDGGRLLAAAAAAAGEGRHGGLGSTQQMQYG
FETIGRGRGPVDEEEEKEEEEEQESGYGGSSEGTFEPGGGRWGGVGGSQG
RYRDEEEKGEEEDEEEEDDSSETGSEGVGVSGLPIGEASLSSGDERIWRT
AGSRA back to topmRNA from alignment at Scaffold_360:13055..15325- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft419_3a-0001 ID=EsuBft419_3a-0001|Name=EsuBft419_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2271bp|location=Sequence derived from alignment at Scaffold_360:13055..15325- (Ectocarpus subulatus male Bft15b)
ATGTTCCACGACCGACCGCCTCGGCGTCGAAGGACTTCTCGGTCCAAGAG
CGGCGGCGGGGCAGGGATGGCGGCGGCGGCGGTGGGAGGACGGGGAGCGA
GGAAACGGGGCGGCGGCCTCGGCGGCGGTCGCGCTGTGCTCGACGTGGCC
CTGCCAGGTGCGGGTGCACTCGACGAACGGATGGGAATAGCGAGGCTCTC
TTTCCTTCCCTCGCTGCCCCCGACTGCTAGACGTAGAGCAGAAATACTGA
GTTGTTGTTGTAGATCCGTCGCTCGTTCTCGGTACGGTATGGCTGTTAAC
CTTACCCTTGACCTGTTCATATACCTTAACCGTTTCTCGGTCTCGGCACC
CCACCCTCCTCCCTAAACACATGTGTGACGGAGCCAAGAATGAACGGTAT
CTACGTTTCTTTGCTGACAAGAATTGATTGATTGCAAGCCGTAGCTTTGA
GCGGATTGGTGGATGCGATGTGCGTTTGTGTGTTTATCGCGGTGCTGGCA
ATGCACAGCGTGCTAATAGTTACGCCCGACGTACAGTTTCTGCAGGTGGT
CGGTGCAACGGCTATACATCTCGTTCTACCGAAACGTACCTGCTCGCCTT
AACCTGCTTCCGCATCGCCTGTACAACTGCTGTACGCACGCGGTAGATGT
GCAGGGCCTGAGTCTGGCGGCATCGACCAGCGGCTCATCATCTCGCAAAG
ACAGCAGTGACGACGACGGGGACGACGATGACAGTGGGTACGATGACCGA
GATCGAGGTATCTCGGCCAGCCGAGAGCGGTGGACGAAGGAGTGGAATCG
AGCCATCGGCGCCGGCGACGACGATGACGGTCCCGGGCCGGCAAGAGCAG
GAGGTGATCGGCGGCACGGACACCAAGAGGACGCCGCTGCTGCTTCTGTA
GCGGTGGGGATGGAGACCCCCTCCACGTCGTTGACGAGAAGGAAGAGAAG
GAGTAAGAGGAGGGCGGCACCATCACGGGTGACCGTTCTGGAAAACGAAG
ATGGCGGCAGACTTCTTGCAGCCGCAGCAGCAGCAGCAGGAGAAGGGCGG
CATGGGGGGTTGGGTAGCACGCAGCAAATGCAGTATGGGTTTGAGACGAT
CGGGCGCGGGCGGGGCCCAGTGGACGAGGAGGAGGAGAAGGAGGAGGAGG
AGGAACAAGAGAGCGGGTACGGGGGGTCCTCCGAAGGAACATTTGAACCT
GGGGGGGGCAGGTGGGGTGGGGTGGGTGGAAGCCAAGGCCGTTATCGTGA
CGAAGAAGAGAAGGGGGAAGAGGAGGATGAGGAGGAAGAGGACGACAGCT
CGGAAACAGGAAGCGAGGTTTGTTTTCATATATATATATATATATGGATT
GGCCCGCTGGTTGGTTGCTGCCTTTCGTGTCGAGTGCTCCGTTGTTTTGC
AGGGTGGCCTTCTTTTCTTTTAGAGGGGGAAGGCGGGGACGGACAGCCAA
TGTGCCCGGCGAGCTAGATTTCTACGGTGTGCTACTGGTGCCATCTCTGC
GTGTCTTTGTTCGCTTGTCGACACTGCTGCTGTGACCCTCAACGATCGGT
GCAAGTCGCGCCAAAATCATGTGCTCCGTTGCCGTTCCTAATACCTCTCA
CAACGCGTTTTGTATTCCTGAACCGGACGCTCTTTCTGGAATCAGGGCGT
GGGCGTGAGCGGGCTGCCGATCGGCGAGGCTAGCCTGTCCTCTGGGGACG
AGAGGATCTGGAGAACCGCTGGTAGCAGAGCTTGAAGGAAGCCGCGGCGG
ATGTATAAGTAAAAAAACGTTAGTCGTGTATTTGAATACAGCAGTGAGTG
AGGGTTGATGGAAAAGGGACCCAATCCTTGCGGGACAGCCATAAACCAAC
AACACCACACCGGATAACACACTTTCATGTGTGCCACACAAACCACGCAA
CCGTTTGGATGGTATGGGTGCATTTTTACTGTGTCGGCAAGGAAGGTTAG
TCAGGATTTGTTGTGTCTTTGCACTCCGTTCGTGTCTATTTATTTAGTGG
TTGGTTTAAGACCAAAGTATTCTGTGGGTTGGGGAGTAAGGGAAGATCTA
TAAGAGCATTATTTCTGTAGCATTTGGATTTCCGTGTATCTAATATTGTT
GTAGCTTAGGCTTTGTGCCCCCAAGCGCAGAGAAGCAACCGAATCGAGGT
GACGTACAATAGTATTTACAACGTGGTCAGCTCTGGTGCCGTTAGCGCCA
AGCATGCTTGTTGCTGCCTGCAGCAGTCTCCCGTCCATGGTATTTTTCTC
ATTTTGCGAGGATATCACGCG back to topCoding sequence (CDS) from alignment at Scaffold_360:13055..15325- >EsuBft419_3a-0001 ID=EsuBft419_3a-0001|Name=EsuBft419_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=918bp|location=Sequence derived from alignment at Scaffold_360:13055..15325- (Ectocarpus subulatus male Bft15b)
ATGTTCCACGACCGACCGCCTCGGCGTCGAAGGACTTCTCGGTCCAAGAG
CGGCGGCGGGGCAGGGATGGCGGCGGCGGCGGTGGGAGGACGGGGAGCGA
GGAAACGGGGCGGCGGCCTCGGCGGCGGTCGCGCTGTGCTCGACGTGGCC
CTGCCAGATGTGCAGGGCCTGAGTCTGGCGGCATCGACCAGCGGCTCATC
ATCTCGCAAAGACAGCAGTGACGACGACGGGGACGACGATGACAGTGGGT
ACGATGACCGAGATCGAGGTATCTCGGCCAGCCGAGAGCGGTGGACGAAG
GAGTGGAATCGAGCCATCGGCGCCGGCGACGACGATGACGGTCCCGGGCC
GGCAAGAGCAGGAGGTGATCGGCGGCACGGACACCAAGAGGACGCCGCTG
CTGCTTCTGTAGCGGTGGGGATGGAGACCCCCTCCACGTCGTTGACGAGA
AGGAAGAGAAGGAGTAAGAGGAGGGCGGCACCATCACGGGTGACCGTTCT
GGAAAACGAAGATGGCGGCAGACTTCTTGCAGCCGCAGCAGCAGCAGCAG
GAGAAGGGCGGCATGGGGGGTTGGGTAGCACGCAGCAAATGCAGTATGGG
TTTGAGACGATCGGGCGCGGGCGGGGCCCAGTGGACGAGGAGGAGGAGAA
GGAGGAGGAGGAGGAACAAGAGAGCGGGTACGGGGGGTCCTCCGAAGGAA
CATTTGAACCTGGGGGGGGCAGGTGGGGTGGGGTGGGTGGAAGCCAAGGC
CGTTATCGTGACGAAGAAGAGAAGGGGGAAGAGGAGGATGAGGAGGAAGA
GGACGACAGCTCGGAAACAGGAAGCGAGGGCGTGGGCGTGAGCGGGCTGC
CGATCGGCGAGGCTAGCCTGTCCTCTGGGGACGAGAGGATCTGGAGAACC
GCTGGTAGCAGAGCTTGA back to top
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