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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Status | Manually annotated |
| Seed ortholog | 2880.D8LFA7 |
| ProteomeId | EsuBft419_2 |
| Protein domains | PTHR10791 |
| Protein domains | PF03083 |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | sugar transporter sweet1 os:caenorhabditis elegans gn:swt-1 pe:3 sv:1 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1229 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 7.01e-112 |
| EggNOG OGs | KOG1623@1|root,KOG1623@2759|Eukaryota |
| Ec32 ortholog description | MtN3-like protein |
| Ec32 ortholog | Ec-01_004270.1 |
| Date last modified | 2016-12-12 |
| Date creation | 2016-06-13 |
| Preferred name | swt-4 |
| KEGG ko | ko:K15382 |
| KEGG TC | 9.A.58.1 |
| GOs | GO:0002376,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005886,GO:0006810,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008643,GO:0009605,GO:0009607,GO:0009617,GO:0012505,GO:0015144,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0034219,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045087,GO:0050829,GO:0050896,GO:0051119,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0071702,GO:0071944,GO:0098542 |
| Description | Sugar transporter |
| Description | sugar transmembrane transporter activity |
| COG category | U |
| BRITE | ko00000,ko02000 |
| Note | Groisillier A., annotator |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0005975 |
| GO | 0031227 |
| GO | 0071702 |
| GO | 0004180 |
| GO | 0012505 |
| GO | 0016020 |
| GO | 0048513 |
| GO | 0043231 |
| GO | 0044765 |
| GO | 0045815 |
| TCDB | 2.A.123.1.. |
| GO | 0003333 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft419_2a-0001 ID=EsuBft419_2a-0001|Name=EsuBft419_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1229bp|location=Sequence derived from alignment at Scaffold_360:5973..9574+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTGAGACGAAGCAAGCACGTCGGCGAGCGATCTGTCTTTCCCTTCGTCTG
CATGTGGGCCAGCTCGACCCTATGGTTAATCTACGGGCTCTTCATCGGAG
ACATAGTCCCGACCGTCGTAACGAACCTCTTGGGGTTGGCGTGCTCTTGC
TACTACTGCGCCGTTTTCGCTTGGGCGGTGGAGCCGGCGTCAAGAAAATC
TAGTACCTACAACCTCTTCGCGGCAGCGTTTCTCGGGATCTGCGTGGTGG
TTACGTTCTGCCTAGGCACCTTCTCCCCACGATCGGCGCCCTGGGTGTCG
ATGCAGGACACCAACAGCACGGACAGCGGGGGGGACGAGAGGGCACAGCG
CTTTCTGGGGATAGCCGCGTCGGCGGCAACGGCTATCCAGTACGGCGCCC
CTCTGGCGGAGCTGGTCAAGGTGATACGCCGGAGGTCAACAGAGGGGATG
TCGCTCGCGCTGGCCGTGGTTTCGTTGGTCTGTTCGACGCTGTGGATGTC
CTACGGAGTGATGCTGGTCAATGCCTTCATCTACGTACCCAACGTGTTGG
GAGTCTGCTTCAGCGTTACCCAGTGCCTGCTCTTCTGCCTGTTCCCAAGA
AGACGCCACCACCAAAACCAACCCAAGTGGGCCGTCTGAAGGGAAAAATA
CGAAGGGGCTGGGTATTCCTGGTGCAGCACACCAGCGCCTGGGACGATGA
TTTTGGTTGGTCGATCGACGAGGCAGTCGGTATCCTGCTTCGGTTTTCCA
TTGGCCGTGGAGGGAGGGGGGGGGGGGGGGGNNNNNNNNNNNGGGGGGGC
AAGGCTGGGGGACCGGTAGGCTGTAAGTCAAGCCCCTAAGTTCCCGACAG
AAAACAGGGGAAGTGGTGGGGCGGTGTTGTGGCGAGGCAGCAGCGGCGGG
CGGTGGAGGAAACAAGCACGTGCGGCGGCGGCGGCGGCGGCGGTGGCTGC
AGCACTAGTGCGCCATCGGGCGGCGTGTAAACGATGGCCGAAGTAGAAGG
AGCAACGAGGAGAGGCAGCGGACCTCCCTTCCTCTTGTTCCTCCCCTCGT
TGTTGTTAGTTCCACGTCCGCGTCAAGCCTCGACACCCCCGGAACCCCTG
CAATTCCCCCTCGTCCCTGACGGCTGGGTTTCCGGATGAATAGCAGCTGT
ATGCATGGCACACTGCTTTTAGTCTCGTTGCGTCGGTTGGATCGATGAAA
AGTACAGCACATTGCTGCTGTATGGCGCG back to topprotein sequence of EsuBft419_2a-0001 >EsuBft419_2 ID=EsuBft419_2|Name=EsuBft419_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=195bp
MWASSTLWLIYGLFIGDIVPTVVTNLLGLACSCYYCAVFAWAVEPASRKS
STYNLFAAAFLGICVVVTFCLGTFSPRSAPWVSMQDTNSTDSGGDERAQR
FLGIAASAATAIQYGAPLAELVKVIRRRSTEGMSLALAVVSLVCSTLWMS
YGVMLVNAFIYVPNVLGVCFSVTQCLLFCLFPRRRHHQNQPKWAV back to topmRNA from alignment at Scaffold_360:5973..9574+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft419_2a-0001 ID=EsuBft419_2a-0001|Name=EsuBft419_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3602bp|location=Sequence derived from alignment at Scaffold_360:5973..9574+ (Ectocarpus subulatus male Bft15b)
GTGAGACGAAGCAAGCACGTCGGCGAGCGATCTGTCTTTCCCTTCGTCTG
CATGTGGGCCAGCTCGACCCTATGGTGAGGCGTTATTACAGTATTTTGCA
TGCATGATTCTGTTTTGCACGTAGACCACATGCAATCAAAGTTGTCTAAT
TGTCTAATAAAATACTAGGCGGCTGGCTTTTTCATCGACCGATCGGGCAT
GGTACAAAGCAATGATATCTGTGTGATAAGTTCTCGCCCGAAATCGTGCT
TCACGGTAAACACCGGGCAGCTTGTCCGTCGGTGAGAAGTGGTAACAACT
TATGTGTGTGTGTGTTTGGCGGATCCGGTTCAAGTACAGTACGCAGCGAA
AAACACTGGGGCCGCTTTGGTGAAATCCCCATTAATTTCGTTGGCGTAAC
CGCACCGCCCTCCCCCCCCCAGCCGCCCTCGCGAAGGGTTTGGGAAGAGC
TGGCGTTGCTAATAGACGCGTGTCGACAAGAACAGGAACATGCACAGCGG
TGCTCCTTGTCCAAACGGCATGCGTTCGAACCCAGTCTAACGGCTACATC
CACACGAGATGCGCCAAACGAGAGCTCCCATGCGGTGGTGCCAGGTTAAT
CTACGGGCTCTTCATCGGAGACATAGTCCCGACCGTCGTAACGAACCTCT
TGGGGTTGGCGTGCTCTTGCTACTACTGCGCCGTTTTCGCTTGGGCGGTG
GAGCCGGCGTCAAGAAAATCTAGTACCTACAACCTCTTCGCGGCAGCGTT
TCTCGGGATCTGGTGAGTAGTTCGTTGGTGGTTACCTTTCGGCTTTGGCT
CGGTCGGGAATTTTCATGCGTACAGTAGAGGGGCCCTGCTTGTCGTGGCG
TGGCAGTAGAGGGGCCCTGCTTGTCGTGGCGTGGCATTGTGTCCCAGCTG
CCTGTTGGGATTGTTGCTGTGTGTTGGTAGGTCTCACAAGCAGAGAGCAT
GAAAATCCACTGCTGTTGATGCTGCTGCTGCTGTTGCTGCTGTTACTGCT
GCTTTGGACCGTGCTAGGTTTTGTCATTGTGGCAACGGACGGTGTTTTCT
GGTAACAAAATATGATGGGTGTGACGGCGACGATGTGTTCGCGCACACAA
AGAGCAAGCAGCGTGCCACGGGTGCCCCCTCTTGCAAGCTCCCACAAGAC
TCCACTCCGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCNNNNNNCCCCCCCCCCCCTCCCTGTCGAGAGAACCGAAACGCC
TTTCATGCAACCTTGGTAGCCAATCTTTTTCGTCTGAGCAAGAAGTGAGC
CTGACCCTCACCGCCACACGGCCGCGCTGATCGAATACGACACGAAAAAA
CAGCGTGGTGGTTACGTTCTGCCTAGGCACCTTCTCCCCACGATCGGCGC
CCTGGGTGTCGATGCAGGACACCAACAGCACGGACAGCGGGGGGGACGAG
AGGGCACAGCGCTTTCTGGGGATAGCCGCGTCGGCGGCAACGGCTATCCA
GTACGGCGCCCCTCTGGCGGAGCTGGTCAAGGTGGGTGGGTGGGGACCGA
CTTCACGGGGATGTTCGGTGTTATATGTACAGAGGGGGGGTTAGTTGCCC
TAACCTTCATCCCCCGTAAGCCTTGCTAAAACCAAGGTTACTCTCCTTGC
GAATGGTACGGGGTGGAGGTGGGGTGGGTGTGTGCCTAACCCTAGTAACC
TAATCCCCCGTAACCCCTATTGAAGCCAACACATTACTATCCTCGCGAAT
GCTACGGGGTCGGTGGGTGGATGGATGCCGGGTAGCGTGGGTAAGCACAA
GGGCACCACCCAGTCCTCTGTTGGTGGTGTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTTTTGTCTGGACGTTGAATTCGTCCAGACGACTGACTG
CTGTCTTCGTGCCTCTTTCACGCGGGTGGGATCAGTGAGGCCAACGGGTT
TATGATTGGGTCCCGGAACAAAAAATGAAGAGCACTGCAATAGCGACCCG
TCACGATATCGTTGTTGTTCATCTCTCCTCTCGCGTTTGTTTTTCGTTGA
CATGGAATGTTGTTTTTTGGTGCGGTTTCTCCCTTTTTTCTTGTACTGCT
GTACTGCCACGATATTTTCGCTCAGGCCGCTCGCACAGACTGTGGATTCT
CTGTGGAGGGGTGGTTGAAACCCTCGCGAGTGTTTCATGTATACATCGGC
GTTGATGTTGAGTCGTATGCTATCTTCCACTCTTAGCTGCTGTGCCGTTG
GGTGTGATGCCATGTCGGCAAGGCTACGCCATGTGGTGAGACTTAATGCC
AACCCTGCTATTCGGGTAGTGCTATTTAATGTTTGCTTGCGTATGCAACA
TTAGCTGAACCCGTGATAGGTATCCTTGATGTCGTGTTTTGAGGGGCTGG
TGTATGTTATTGCGTGTTTTCATGCTCTGCGTTTTACATCGTCGCGTGAA
GCAGGTGATACGCCGGAGGTCAACAGAGGGGATGTCGCTCGCGCTGGCCG
TGGTTTCGTTGGTCTGTTCGACGCTGTGGATGTCCTACGGAGTGATGCTG
GTCAATGCCTTCATCTACGTACCCAACGTGTTGGGAGTCTGCTTCAGCGT
TACCCAGGTACGAGACAAGCGTGTGGTTGTTTGCTCCGGAAGTAATCTTG
ACGACGATGATGGCGGTGATGACGGCCGGCGATGATTCATGGTGCTCATG
GCTTCCACACGATTGACCACATGGCTAAACAACTCTGGTTCATGTGGTTT
GTCCCCCCCCCCCGCCCTTCTCGCCCCAACAATGAGCGTGACCATGCCCC
AAGCAGTCCACCGTCTTCCGACTACAACATGCGTCTTCACGAGTACACCC
CCCCCCGCTCCCCCCGGCACGCCTCTTTCAATCCCTGCTTATCCAGTGCC
TGCTCTTCTGCCTGTTCCCAAGAAGACGCCACCACCAAAACCAACCCAAG
TGGGCCGTCTGAAGGGAAAAATACGAAGGGGCTGGGTATTCCTGGTGCAG
CACACCAGCGCCTGGGACGATGATTTTGGTTGGTCGATCGACGAGGCAGT
CGGTATCCTGCTTCGGTTTTCCATTGGCCGTGGAGGGAGGGGGGGGGGGG
GGGGNNNNNNNNNNNGGGGGGGCAAGGCTGGGGGACCGGTAGGCTGTAAG
TCAAGCCCCTAAGTTCCCGACAGAAAACAGGGGAAGTGGTGGGGCGGTGT
TGTGGCGAGGCAGCAGCGGCGGGCGGTGGAGGAAACAAGCACGTGCGGCG
GCGGCGGCGGCGGCGGTGGCTGCAGCACTAGTGCGCCATCGGGCGGCGTG
TAAACGATGGCCGAAGTAGAAGGAGCAACGAGGAGAGGCAGCGGACCTCC
CTTCCTCTTGTTCCTCCCCTCGTTGTTGTTAGTTCCACGTCCGCGTCAAG
CCTCGACACCCCCGGAACCCCTGCAATTCCCCCTCGTCCCTGACGGCTGG
GTTTCCGGATGAATAGCAGCTGTATGCATGGCACACTGCTTTTAGTCTCG
TTGCGTCGGTTGGATCGATGAAAAGTACAGCACATTGCTGCTGTATGGCG
CG back to topCoding sequence (CDS) from alignment at Scaffold_360:5973..9574+ >EsuBft419_2a-0001 ID=EsuBft419_2a-0001|Name=EsuBft419_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=588bp|location=Sequence derived from alignment at Scaffold_360:5973..9574+ (Ectocarpus subulatus male Bft15b)
ATGTGGGCCAGCTCGACCCTATGGTTAATCTACGGGCTCTTCATCGGAGA
CATAGTCCCGACCGTCGTAACGAACCTCTTGGGGTTGGCGTGCTCTTGCT
ACTACTGCGCCGTTTTCGCTTGGGCGGTGGAGCCGGCGTCAAGAAAATCT
AGTACCTACAACCTCTTCGCGGCAGCGTTTCTCGGGATCTGCGTGGTGGT
TACGTTCTGCCTAGGCACCTTCTCCCCACGATCGGCGCCCTGGGTGTCGA
TGCAGGACACCAACAGCACGGACAGCGGGGGGGACGAGAGGGCACAGCGC
TTTCTGGGGATAGCCGCGTCGGCGGCAACGGCTATCCAGTACGGCGCCCC
TCTGGCGGAGCTGGTCAAGGTGATACGCCGGAGGTCAACAGAGGGGATGT
CGCTCGCGCTGGCCGTGGTTTCGTTGGTCTGTTCGACGCTGTGGATGTCC
TACGGAGTGATGCTGGTCAATGCCTTCATCTACGTACCCAACGTGTTGGG
AGTCTGCTTCAGCGTTACCCAGTGCCTGCTCTTCTGCCTGTTCCCAAGAA
GACGCCACCACCAAAACCAACCCAAGTGGGCCGTCTGA back to top
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