EsuBft419_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft419_2a-0001
Unique NameEsuBft419_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:5973..9574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
StatusManually annotated
Seed ortholog2880.D8LFA7
ProteomeIdEsuBft419_2
Protein domainsPTHR10791
Protein domainsPF03083
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Notesugar transporter sweet1 os:caenorhabditis elegans gn:swt-1 pe:3 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1229
Hectar predicted targeting categorysignal peptide
Evalue7.01e-112
EggNOG OGsKOG1623@1|root,KOG1623@2759|Eukaryota
Ec32 ortholog descriptionMtN3-like protein
Ec32 orthologEc-01_004270.1
Date last modified2016-12-12
Date creation2016-06-13
Preferred nameswt-4
KEGG koko:K15382
KEGG TC9.A.58.1
GOsGO:0002376,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005886,GO:0006810,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008643,GO:0009605,GO:0009607,GO:0009617,GO:0012505,GO:0015144,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0034219,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045087,GO:0050829,GO:0050896,GO:0051119,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0071702,GO:0071944,GO:0098542
DescriptionSugar transporter
Descriptionsugar transmembrane transporter activity
COG categoryU
BRITEko00000,ko02000
NoteGroisillier A., annotator
Cross References
External references for this mRNA
DatabaseAccession
GO0005975
GO0031227
GO0071702
GO0004180
GO0012505
GO0016020
GO0048513
GO0043231
GO0044765
GO0045815
TCDB2.A.123.1..
GO0003333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft419_2aEsuBft419_2aEctocarpus subulatus male Bft15bgeneScaffold_360 5973..9574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_2a-0001EsuBft419_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 6024..8984 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_2a-0001-exonagat-exon-28303Ectocarpus subulatus male Bft15bexonScaffold_360 5973..6046 +
EsuBft419_2a-0001-exonagat-exon-28302Ectocarpus subulatus male Bft15bexonScaffold_360 6567..6734 +
EsuBft419_2a-0001-exonagat-exon-28305Ectocarpus subulatus male Bft15bexonScaffold_360 7376..7553 +
EsuBft419_2a-0001-exonEsuBft419_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 8477..8629 +
EsuBft419_2a-0001-exonagat-exon-28304Ectocarpus subulatus male Bft15bexonScaffold_360 8919..9574 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_2a-0001-exonagat-five_prime_utr-9797Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_360 5973..6023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_2a-0001-cdsEsuBft419_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 6024..6046 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_2a-0001-exonagat-three_prime_utr-15411Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_360 8985..9574 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft419_2a-0001 ID=EsuBft419_2a-0001|Name=EsuBft419_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1229bp|location=Sequence derived from alignment at Scaffold_360:5973..9574+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGAGACGAAGCAAGCACGTCGGCGAGCGATCTGTCTTTCCCTTCGTCTG
CATGTGGGCCAGCTCGACCCTATGGTTAATCTACGGGCTCTTCATCGGAG
ACATAGTCCCGACCGTCGTAACGAACCTCTTGGGGTTGGCGTGCTCTTGC
TACTACTGCGCCGTTTTCGCTTGGGCGGTGGAGCCGGCGTCAAGAAAATC
TAGTACCTACAACCTCTTCGCGGCAGCGTTTCTCGGGATCTGCGTGGTGG
TTACGTTCTGCCTAGGCACCTTCTCCCCACGATCGGCGCCCTGGGTGTCG
ATGCAGGACACCAACAGCACGGACAGCGGGGGGGACGAGAGGGCACAGCG
CTTTCTGGGGATAGCCGCGTCGGCGGCAACGGCTATCCAGTACGGCGCCC
CTCTGGCGGAGCTGGTCAAGGTGATACGCCGGAGGTCAACAGAGGGGATG
TCGCTCGCGCTGGCCGTGGTTTCGTTGGTCTGTTCGACGCTGTGGATGTC
CTACGGAGTGATGCTGGTCAATGCCTTCATCTACGTACCCAACGTGTTGG
GAGTCTGCTTCAGCGTTACCCAGTGCCTGCTCTTCTGCCTGTTCCCAAGA
AGACGCCACCACCAAAACCAACCCAAGTGGGCCGTCTGAAGGGAAAAATA
CGAAGGGGCTGGGTATTCCTGGTGCAGCACACCAGCGCCTGGGACGATGA
TTTTGGTTGGTCGATCGACGAGGCAGTCGGTATCCTGCTTCGGTTTTCCA
TTGGCCGTGGAGGGAGGGGGGGGGGGGGGGGNNNNNNNNNNNGGGGGGGC
AAGGCTGGGGGACCGGTAGGCTGTAAGTCAAGCCCCTAAGTTCCCGACAG
AAAACAGGGGAAGTGGTGGGGCGGTGTTGTGGCGAGGCAGCAGCGGCGGG
CGGTGGAGGAAACAAGCACGTGCGGCGGCGGCGGCGGCGGCGGTGGCTGC
AGCACTAGTGCGCCATCGGGCGGCGTGTAAACGATGGCCGAAGTAGAAGG
AGCAACGAGGAGAGGCAGCGGACCTCCCTTCCTCTTGTTCCTCCCCTCGT
TGTTGTTAGTTCCACGTCCGCGTCAAGCCTCGACACCCCCGGAACCCCTG
CAATTCCCCCTCGTCCCTGACGGCTGGGTTTCCGGATGAATAGCAGCTGT
ATGCATGGCACACTGCTTTTAGTCTCGTTGCGTCGGTTGGATCGATGAAA
AGTACAGCACATTGCTGCTGTATGGCGCG
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protein sequence of EsuBft419_2a-0001

>EsuBft419_2 ID=EsuBft419_2|Name=EsuBft419_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=195bp
MWASSTLWLIYGLFIGDIVPTVVTNLLGLACSCYYCAVFAWAVEPASRKS
STYNLFAAAFLGICVVVTFCLGTFSPRSAPWVSMQDTNSTDSGGDERAQR
FLGIAASAATAIQYGAPLAELVKVIRRRSTEGMSLALAVVSLVCSTLWMS
YGVMLVNAFIYVPNVLGVCFSVTQCLLFCLFPRRRHHQNQPKWAV
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mRNA from alignment at Scaffold_360:5973..9574+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft419_2a-0001 ID=EsuBft419_2a-0001|Name=EsuBft419_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3602bp|location=Sequence derived from alignment at Scaffold_360:5973..9574+ (Ectocarpus subulatus male Bft15b)
GTGAGACGAAGCAAGCACGTCGGCGAGCGATCTGTCTTTCCCTTCGTCTG
CATGTGGGCCAGCTCGACCCTATGGTGAGGCGTTATTACAGTATTTTGCA
TGCATGATTCTGTTTTGCACGTAGACCACATGCAATCAAAGTTGTCTAAT
TGTCTAATAAAATACTAGGCGGCTGGCTTTTTCATCGACCGATCGGGCAT
GGTACAAAGCAATGATATCTGTGTGATAAGTTCTCGCCCGAAATCGTGCT
TCACGGTAAACACCGGGCAGCTTGTCCGTCGGTGAGAAGTGGTAACAACT
TATGTGTGTGTGTGTTTGGCGGATCCGGTTCAAGTACAGTACGCAGCGAA
AAACACTGGGGCCGCTTTGGTGAAATCCCCATTAATTTCGTTGGCGTAAC
CGCACCGCCCTCCCCCCCCCAGCCGCCCTCGCGAAGGGTTTGGGAAGAGC
TGGCGTTGCTAATAGACGCGTGTCGACAAGAACAGGAACATGCACAGCGG
TGCTCCTTGTCCAAACGGCATGCGTTCGAACCCAGTCTAACGGCTACATC
CACACGAGATGCGCCAAACGAGAGCTCCCATGCGGTGGTGCCAGGTTAAT
CTACGGGCTCTTCATCGGAGACATAGTCCCGACCGTCGTAACGAACCTCT
TGGGGTTGGCGTGCTCTTGCTACTACTGCGCCGTTTTCGCTTGGGCGGTG
GAGCCGGCGTCAAGAAAATCTAGTACCTACAACCTCTTCGCGGCAGCGTT
TCTCGGGATCTGGTGAGTAGTTCGTTGGTGGTTACCTTTCGGCTTTGGCT
CGGTCGGGAATTTTCATGCGTACAGTAGAGGGGCCCTGCTTGTCGTGGCG
TGGCAGTAGAGGGGCCCTGCTTGTCGTGGCGTGGCATTGTGTCCCAGCTG
CCTGTTGGGATTGTTGCTGTGTGTTGGTAGGTCTCACAAGCAGAGAGCAT
GAAAATCCACTGCTGTTGATGCTGCTGCTGCTGTTGCTGCTGTTACTGCT
GCTTTGGACCGTGCTAGGTTTTGTCATTGTGGCAACGGACGGTGTTTTCT
GGTAACAAAATATGATGGGTGTGACGGCGACGATGTGTTCGCGCACACAA
AGAGCAAGCAGCGTGCCACGGGTGCCCCCTCTTGCAAGCTCCCACAAGAC
TCCACTCCGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCNNNNNNCCCCCCCCCCCCTCCCTGTCGAGAGAACCGAAACGCC
TTTCATGCAACCTTGGTAGCCAATCTTTTTCGTCTGAGCAAGAAGTGAGC
CTGACCCTCACCGCCACACGGCCGCGCTGATCGAATACGACACGAAAAAA
CAGCGTGGTGGTTACGTTCTGCCTAGGCACCTTCTCCCCACGATCGGCGC
CCTGGGTGTCGATGCAGGACACCAACAGCACGGACAGCGGGGGGGACGAG
AGGGCACAGCGCTTTCTGGGGATAGCCGCGTCGGCGGCAACGGCTATCCA
GTACGGCGCCCCTCTGGCGGAGCTGGTCAAGGTGGGTGGGTGGGGACCGA
CTTCACGGGGATGTTCGGTGTTATATGTACAGAGGGGGGGTTAGTTGCCC
TAACCTTCATCCCCCGTAAGCCTTGCTAAAACCAAGGTTACTCTCCTTGC
GAATGGTACGGGGTGGAGGTGGGGTGGGTGTGTGCCTAACCCTAGTAACC
TAATCCCCCGTAACCCCTATTGAAGCCAACACATTACTATCCTCGCGAAT
GCTACGGGGTCGGTGGGTGGATGGATGCCGGGTAGCGTGGGTAAGCACAA
GGGCACCACCCAGTCCTCTGTTGGTGGTGTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTTTTGTCTGGACGTTGAATTCGTCCAGACGACTGACTG
CTGTCTTCGTGCCTCTTTCACGCGGGTGGGATCAGTGAGGCCAACGGGTT
TATGATTGGGTCCCGGAACAAAAAATGAAGAGCACTGCAATAGCGACCCG
TCACGATATCGTTGTTGTTCATCTCTCCTCTCGCGTTTGTTTTTCGTTGA
CATGGAATGTTGTTTTTTGGTGCGGTTTCTCCCTTTTTTCTTGTACTGCT
GTACTGCCACGATATTTTCGCTCAGGCCGCTCGCACAGACTGTGGATTCT
CTGTGGAGGGGTGGTTGAAACCCTCGCGAGTGTTTCATGTATACATCGGC
GTTGATGTTGAGTCGTATGCTATCTTCCACTCTTAGCTGCTGTGCCGTTG
GGTGTGATGCCATGTCGGCAAGGCTACGCCATGTGGTGAGACTTAATGCC
AACCCTGCTATTCGGGTAGTGCTATTTAATGTTTGCTTGCGTATGCAACA
TTAGCTGAACCCGTGATAGGTATCCTTGATGTCGTGTTTTGAGGGGCTGG
TGTATGTTATTGCGTGTTTTCATGCTCTGCGTTTTACATCGTCGCGTGAA
GCAGGTGATACGCCGGAGGTCAACAGAGGGGATGTCGCTCGCGCTGGCCG
TGGTTTCGTTGGTCTGTTCGACGCTGTGGATGTCCTACGGAGTGATGCTG
GTCAATGCCTTCATCTACGTACCCAACGTGTTGGGAGTCTGCTTCAGCGT
TACCCAGGTACGAGACAAGCGTGTGGTTGTTTGCTCCGGAAGTAATCTTG
ACGACGATGATGGCGGTGATGACGGCCGGCGATGATTCATGGTGCTCATG
GCTTCCACACGATTGACCACATGGCTAAACAACTCTGGTTCATGTGGTTT
GTCCCCCCCCCCCGCCCTTCTCGCCCCAACAATGAGCGTGACCATGCCCC
AAGCAGTCCACCGTCTTCCGACTACAACATGCGTCTTCACGAGTACACCC
CCCCCCGCTCCCCCCGGCACGCCTCTTTCAATCCCTGCTTATCCAGTGCC
TGCTCTTCTGCCTGTTCCCAAGAAGACGCCACCACCAAAACCAACCCAAG
TGGGCCGTCTGAAGGGAAAAATACGAAGGGGCTGGGTATTCCTGGTGCAG
CACACCAGCGCCTGGGACGATGATTTTGGTTGGTCGATCGACGAGGCAGT
CGGTATCCTGCTTCGGTTTTCCATTGGCCGTGGAGGGAGGGGGGGGGGGG
GGGGNNNNNNNNNNNGGGGGGGCAAGGCTGGGGGACCGGTAGGCTGTAAG
TCAAGCCCCTAAGTTCCCGACAGAAAACAGGGGAAGTGGTGGGGCGGTGT
TGTGGCGAGGCAGCAGCGGCGGGCGGTGGAGGAAACAAGCACGTGCGGCG
GCGGCGGCGGCGGCGGTGGCTGCAGCACTAGTGCGCCATCGGGCGGCGTG
TAAACGATGGCCGAAGTAGAAGGAGCAACGAGGAGAGGCAGCGGACCTCC
CTTCCTCTTGTTCCTCCCCTCGTTGTTGTTAGTTCCACGTCCGCGTCAAG
CCTCGACACCCCCGGAACCCCTGCAATTCCCCCTCGTCCCTGACGGCTGG
GTTTCCGGATGAATAGCAGCTGTATGCATGGCACACTGCTTTTAGTCTCG
TTGCGTCGGTTGGATCGATGAAAAGTACAGCACATTGCTGCTGTATGGCG
CG
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Coding sequence (CDS) from alignment at Scaffold_360:5973..9574+

>EsuBft419_2a-0001 ID=EsuBft419_2a-0001|Name=EsuBft419_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=588bp|location=Sequence derived from alignment at Scaffold_360:5973..9574+ (Ectocarpus subulatus male Bft15b)
ATGTGGGCCAGCTCGACCCTATGGTTAATCTACGGGCTCTTCATCGGAGA
CATAGTCCCGACCGTCGTAACGAACCTCTTGGGGTTGGCGTGCTCTTGCT
ACTACTGCGCCGTTTTCGCTTGGGCGGTGGAGCCGGCGTCAAGAAAATCT
AGTACCTACAACCTCTTCGCGGCAGCGTTTCTCGGGATCTGCGTGGTGGT
TACGTTCTGCCTAGGCACCTTCTCCCCACGATCGGCGCCCTGGGTGTCGA
TGCAGGACACCAACAGCACGGACAGCGGGGGGGACGAGAGGGCACAGCGC
TTTCTGGGGATAGCCGCGTCGGCGGCAACGGCTATCCAGTACGGCGCCCC
TCTGGCGGAGCTGGTCAAGGTGATACGCCGGAGGTCAACAGAGGGGATGT
CGCTCGCGCTGGCCGTGGTTTCGTTGGTCTGTTCGACGCTGTGGATGTCC
TACGGAGTGATGCTGGTCAATGCCTTCATCTACGTACCCAACGTGTTGGG
AGTCTGCTTCAGCGTTACCCAGTGCCTGCTCTTCTGCCTGTTCCCAAGAA
GACGCCACCACCAAAACCAACCCAAGTGGGCCGTCTGA
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