EsuBft419_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft419_16a-0001
Unique NameEsuBft419_16a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:120897..122488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog44056.XP_009033235.1
ProteomeIdEsuBft419_16
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length67
Hectar predicted targeting categoryother localisation
Evalue9.99e-08
EggNOG OGs2ATC1@1|root,2RZRQ@2759|Eukaryota
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_004190.1
Date last modified2016-06-13
Date creation2016-06-13
DescriptionCupin superfamily protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft419_16aEsuBft419_16aEctocarpus subulatus male Bft15bgeneScaffold_360 120897..122488 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_16a-0001-exonEsuBft419_16a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 120897..121248 -
EsuBft419_16a-0001-exonagat-exon-28392Ectocarpus subulatus male Bft15bexonScaffold_360 122162..122488 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_16a-0001-exonagat-three_prime_utr-15410Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_360 120897..121082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_16a-0001-cdsEsuBft419_16a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 121083..121248 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_16a-0001-exonagat-five_prime_utr-9796Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_360 122344..122488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_16a-0001EsuBft419_16Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 121083..122343 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft419_16a-0001 ID=EsuBft419_16a-0001|Name=EsuBft419_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=679bp|location=Sequence derived from alignment at Scaffold_360:120897..122488- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGATCTTGGACCTCGAGTAAGGAACGTGTTTGCGCGTGAGAACGCTGCCG
TAGAGAGAGGGATAGAACAGTGCGGAGCGTATATCGATTGTTCGAACACA
CTTGCCGTTGGGTTGGTGTTCTGTCGCTACAGCTACAGCAGTAGGATGGC
GGCGGCCGCCTCAAAAAATGAAGAGAAGAACGTTGTTGGAGATCAGCGGA
ACTGGGAGCAGAGAGTCACGTCCGAGCTAGAGGTCGCCAAGGCGTGGTGC
GAGAACTGGGGGCCGCTGTACGAAGGCGCCACGACGCAACAGCAGCAGTT
GAAATCGCTGGAGGAAAAACTCAAGCGGATGCCTGGGGACCAAGGGACGC
GAACGAACTACCAGCTATCGTTTACCGGCGGAGCGCCATTCGACGAGTAC
CCTGTAGGACTCACCAACCAGAAGCCTCTCAGGATGGAGGACGTCGAGGA
ACTAGCCAAGGAAATGATGGTTGCACAGCAGAAGCGTAGATGATACTGGC
TGTGTGACGCATGTTGGGCGGCAGCTTCATTTAGGTACTCAGAGTTCTTA
CGTCCGCAAGAAGTGAAGAACGGGCCCCTATTTTTCTCAACAGCGAGAGC
CTGTAGATATTCGCCCAGCGGAGCGAGACTTTTATCTATGCGCTCTGGGT
GAACAAACCCTTCGATGCAACAACCTCAC
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protein sequence of EsuBft419_16a-0001

>EsuBft419_16 ID=EsuBft419_16|Name=EsuBft419_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=115bp
MAAAASKNEEKNVVGDQRNWEQRVTSELEVAKAWCENWGPLYEGATTQQQ
QLKSLEEKLKRMPGDQGTRTNYQLSFTGGAPFDEYPVGLTNQKPLRMEDV
EELAKEMMVAQQKRR
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mRNA from alignment at Scaffold_360:120897..122488-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft419_16a-0001 ID=EsuBft419_16a-0001|Name=EsuBft419_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1592bp|location=Sequence derived from alignment at Scaffold_360:120897..122488- (Ectocarpus subulatus male Bft15b)
AGATCTTGGACCTCGAGTAAGGAACGTGTTTGCGCGTGAGAACGCTGCCG
TAGAGAGAGGGATAGAACAGTGCGGAGCGTATATCGATTGTTCGAACACA
CTTGCCGTTGGGTTGGTGTTCTGTCGCTACAGCTACAGCAGTAGGATGGC
GGCGGCCGCCTCAAAAAATGAAGAGAAGAACGTTGTTGGAGATCAGCGGA
ACTGGGAGCAGAGAGTCACGTCCGAGCTAGAGGTCGCCAAGGCGTGGTGC
GAGAACTGGGGGCCGCTGTACGAAGGCGCCACGACGCAACAGCAGCAGTT
GAAATCGCTGGAGGAAAAACTCAAGCGGTGAGTCTCCAACTCACCCGTCC
GTATGACGGTGCATACCGCACCCCCTCGGACCGAGTGTCACATGTCGATT
GCTCCACGACCAAGAGGGTGTGTCAATGTCAAACGATACGTTATGAGAAA
CCTCTCGAAAGGATCTCCTGTGGAGAAAATACATACATCAGAGACGATGC
ATTGTTTGCAATACTCGTCTGCAGTGGGAAGTGATTGTTCCTCTTGTCAG
ACAACTTATTATTGAGGAGCTAAAAAATTTACGCGTATGTTCCTACCCTA
TCGACGCACGTACGTATGCCATACAGGAGACTAGGAGTCTTGAGTAACGG
GTCGCGAGCAACCTAATATGTTCTTTATGTAGATCTTCACTCTGGTGATT
TTCCACTGCTGCAACAGTTGTCGATCTTTCGTATGGAAGACTATGACGCC
GCCAGAGAGTACTGCTGTACGGACCTCCATCATGAGGTGTAATCTGGACG
TATCGGCTGGGGGTTACACAGGAGGAGTTGCCGCACAGGAGCGTATTCTT
CTTCACCTTCCTTCTGCGGTGCTTGCCTTAATTGATGTTTTTGCTCCTAG
AGGCGTTCAGCTGTTCCCTTTCCCTCGTTTAGTGCGATGTCGAATGAATA
GACTATATTCGTACCCACGAAATACAGCAGTCTAAATCGCCAGTTCCTGC
CCCCCAATGTCGAGGTCCGAAGCCACGTCCCAAATGTAAACGTCAGAAGA
TTGCGAGGCCATAAACTAAACTACTCAGCCTCGAATATGATTGTGTGGCC
GAGCAAGGCCGAGTTCATATACTTGTGTTTCGTGGCCAATGCGTCATATT
TTCTGCGTAATATTTGGCCTTCCGTCGGCTTGAACACTTATATATCAACT
TTACAAATAATTTTGTCTTGCCTTTCGCGTTCTTGTGCAGGATGCCTGGG
GACCAAGGGACGCGAACGAACTACCAGCTATCGTTTACCGGCGGAGCGCC
ATTCGACGAGTACCCTGTAGGACTCACCAACCAGAAGCCTCTCAGGATGG
AGGACGTCGAGGAACTAGCCAAGGAAATGATGGTTGCACAGCAGAAGCGT
AGATGATACTGGCTGTGTGACGCATGTTGGGCGGCAGCTTCATTTAGGTA
CTCAGAGTTCTTACGTCCGCAAGAAGTGAAGAACGGGCCCCTATTTTTCT
CAACAGCGAGAGCCTGTAGATATTCGCCCAGCGGAGCGAGACTTTTATCT
ATGCGCTCTGGGTGAACAAACCCTTCGATGCAACAACCTCAC
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Coding sequence (CDS) from alignment at Scaffold_360:120897..122488-

>EsuBft419_16a-0001 ID=EsuBft419_16a-0001|Name=EsuBft419_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=348bp|location=Sequence derived from alignment at Scaffold_360:120897..122488- (Ectocarpus subulatus male Bft15b)
ATGGCGGCGGCCGCCTCAAAAAATGAAGAGAAGAACGTTGTTGGAGATCA
GCGGAACTGGGAGCAGAGAGTCACGTCCGAGCTAGAGGTCGCCAAGGCGT
GGTGCGAGAACTGGGGGCCGCTGTACGAAGGCGCCACGACGCAACAGCAG
CAGTTGAAATCGCTGGAGGAAAAACTCAAGCGGATGCCTGGGGACCAAGG
GACGCGAACGAACTACCAGCTATCGTTTACCGGCGGAGCGCCATTCGACG
AGTACCCTGTAGGACTCACCAACCAGAAGCCTCTCAGGATGGAGGACGTC
GAGGAACTAGCCAAGGAAATGATGGTTGCACAGCAGAAGCGTAGATGA
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