Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 44056.XP_009033235.1 |
| ProteomeId | EsuBft419_16 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 67 |
| Hectar predicted targeting category | other localisation |
| Evalue | 9.99e-08 |
| EggNOG OGs | 2ATC1@1|root,2RZRQ@2759|Eukaryota |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-01_004190.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Cupin superfamily protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft419_16a-0001 ID=EsuBft419_16a-0001|Name=EsuBft419_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=679bp|location=Sequence derived from alignment at Scaffold_360:120897..122488- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AGATCTTGGACCTCGAGTAAGGAACGTGTTTGCGCGTGAGAACGCTGCCG
TAGAGAGAGGGATAGAACAGTGCGGAGCGTATATCGATTGTTCGAACACA
CTTGCCGTTGGGTTGGTGTTCTGTCGCTACAGCTACAGCAGTAGGATGGC
GGCGGCCGCCTCAAAAAATGAAGAGAAGAACGTTGTTGGAGATCAGCGGA
ACTGGGAGCAGAGAGTCACGTCCGAGCTAGAGGTCGCCAAGGCGTGGTGC
GAGAACTGGGGGCCGCTGTACGAAGGCGCCACGACGCAACAGCAGCAGTT
GAAATCGCTGGAGGAAAAACTCAAGCGGATGCCTGGGGACCAAGGGACGC
GAACGAACTACCAGCTATCGTTTACCGGCGGAGCGCCATTCGACGAGTAC
CCTGTAGGACTCACCAACCAGAAGCCTCTCAGGATGGAGGACGTCGAGGA
ACTAGCCAAGGAAATGATGGTTGCACAGCAGAAGCGTAGATGATACTGGC
TGTGTGACGCATGTTGGGCGGCAGCTTCATTTAGGTACTCAGAGTTCTTA
CGTCCGCAAGAAGTGAAGAACGGGCCCCTATTTTTCTCAACAGCGAGAGC
CTGTAGATATTCGCCCAGCGGAGCGAGACTTTTATCTATGCGCTCTGGGT
GAACAAACCCTTCGATGCAACAACCTCAC back to topprotein sequence of EsuBft419_16a-0001 >EsuBft419_16 ID=EsuBft419_16|Name=EsuBft419_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=115bp
MAAAASKNEEKNVVGDQRNWEQRVTSELEVAKAWCENWGPLYEGATTQQQ
QLKSLEEKLKRMPGDQGTRTNYQLSFTGGAPFDEYPVGLTNQKPLRMEDV
EELAKEMMVAQQKRR back to topmRNA from alignment at Scaffold_360:120897..122488- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft419_16a-0001 ID=EsuBft419_16a-0001|Name=EsuBft419_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1592bp|location=Sequence derived from alignment at Scaffold_360:120897..122488- (Ectocarpus subulatus male Bft15b)
AGATCTTGGACCTCGAGTAAGGAACGTGTTTGCGCGTGAGAACGCTGCCG
TAGAGAGAGGGATAGAACAGTGCGGAGCGTATATCGATTGTTCGAACACA
CTTGCCGTTGGGTTGGTGTTCTGTCGCTACAGCTACAGCAGTAGGATGGC
GGCGGCCGCCTCAAAAAATGAAGAGAAGAACGTTGTTGGAGATCAGCGGA
ACTGGGAGCAGAGAGTCACGTCCGAGCTAGAGGTCGCCAAGGCGTGGTGC
GAGAACTGGGGGCCGCTGTACGAAGGCGCCACGACGCAACAGCAGCAGTT
GAAATCGCTGGAGGAAAAACTCAAGCGGTGAGTCTCCAACTCACCCGTCC
GTATGACGGTGCATACCGCACCCCCTCGGACCGAGTGTCACATGTCGATT
GCTCCACGACCAAGAGGGTGTGTCAATGTCAAACGATACGTTATGAGAAA
CCTCTCGAAAGGATCTCCTGTGGAGAAAATACATACATCAGAGACGATGC
ATTGTTTGCAATACTCGTCTGCAGTGGGAAGTGATTGTTCCTCTTGTCAG
ACAACTTATTATTGAGGAGCTAAAAAATTTACGCGTATGTTCCTACCCTA
TCGACGCACGTACGTATGCCATACAGGAGACTAGGAGTCTTGAGTAACGG
GTCGCGAGCAACCTAATATGTTCTTTATGTAGATCTTCACTCTGGTGATT
TTCCACTGCTGCAACAGTTGTCGATCTTTCGTATGGAAGACTATGACGCC
GCCAGAGAGTACTGCTGTACGGACCTCCATCATGAGGTGTAATCTGGACG
TATCGGCTGGGGGTTACACAGGAGGAGTTGCCGCACAGGAGCGTATTCTT
CTTCACCTTCCTTCTGCGGTGCTTGCCTTAATTGATGTTTTTGCTCCTAG
AGGCGTTCAGCTGTTCCCTTTCCCTCGTTTAGTGCGATGTCGAATGAATA
GACTATATTCGTACCCACGAAATACAGCAGTCTAAATCGCCAGTTCCTGC
CCCCCAATGTCGAGGTCCGAAGCCACGTCCCAAATGTAAACGTCAGAAGA
TTGCGAGGCCATAAACTAAACTACTCAGCCTCGAATATGATTGTGTGGCC
GAGCAAGGCCGAGTTCATATACTTGTGTTTCGTGGCCAATGCGTCATATT
TTCTGCGTAATATTTGGCCTTCCGTCGGCTTGAACACTTATATATCAACT
TTACAAATAATTTTGTCTTGCCTTTCGCGTTCTTGTGCAGGATGCCTGGG
GACCAAGGGACGCGAACGAACTACCAGCTATCGTTTACCGGCGGAGCGCC
ATTCGACGAGTACCCTGTAGGACTCACCAACCAGAAGCCTCTCAGGATGG
AGGACGTCGAGGAACTAGCCAAGGAAATGATGGTTGCACAGCAGAAGCGT
AGATGATACTGGCTGTGTGACGCATGTTGGGCGGCAGCTTCATTTAGGTA
CTCAGAGTTCTTACGTCCGCAAGAAGTGAAGAACGGGCCCCTATTTTTCT
CAACAGCGAGAGCCTGTAGATATTCGCCCAGCGGAGCGAGACTTTTATCT
ATGCGCTCTGGGTGAACAAACCCTTCGATGCAACAACCTCAC back to topCoding sequence (CDS) from alignment at Scaffold_360:120897..122488- >EsuBft419_16a-0001 ID=EsuBft419_16a-0001|Name=EsuBft419_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=348bp|location=Sequence derived from alignment at Scaffold_360:120897..122488- (Ectocarpus subulatus male Bft15b)
ATGGCGGCGGCCGCCTCAAAAAATGAAGAGAAGAACGTTGTTGGAGATCA
GCGGAACTGGGAGCAGAGAGTCACGTCCGAGCTAGAGGTCGCCAAGGCGT
GGTGCGAGAACTGGGGGCCGCTGTACGAAGGCGCCACGACGCAACAGCAG
CAGTTGAAATCGCTGGAGGAAAAACTCAAGCGGATGCCTGGGGACCAAGG
GACGCGAACGAACTACCAGCTATCGTTTACCGGCGGAGCGCCATTCGACG
AGTACCCTGTAGGACTCACCAACCAGAAGCCTCTCAGGATGGAGGACGTC
GAGGAACTAGCCAAGGAAATGATGGTTGCACAGCAGAAGCGTAGATGA back to top
|