Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LFA1 |
| ProteomeId | EsuBft419_12 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 22 |
| Hectar predicted targeting category | other localisation |
| Evalue | 4.37e-39 |
| EggNOG OGs | COG5307@1|root,KOG0929@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG ko | ko:K18442 |
| KEGG Pathway | ko04144,map04144 |
| Description | regulation of ARF protein signal transduction |
| COG category | K |
| BRITE | ko00000,ko00001,ko04131 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft419_12a-0001 ID=EsuBft419_12a-0001|Name=EsuBft419_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=222bp|location=Sequence derived from alignment at Scaffold_360:87959..88269+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTGGTGGCGGCAGAGGCAGGCGTGCATCCTCCGCCTACAGAGAGCGA
CACCGGTACCAACGTCAGCAACAATGACGATAGCAGCACGGGTCAGCCGC
CGTCCGGAGGGGAGGATAAGCTACTCCTGGCAATGTGCCGGACCATCAGG
AAGGAGACGGGGTGGCAGGAGAGGACGCTGCGGCAAGCCTGCGACTGGGC
CACAGGTGGCTATATGTTGTGA back to topprotein sequence of EsuBft419_12a-0001 >EsuBft419_12 ID=EsuBft419_12|Name=EsuBft419_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=73bp
MVVAAEAGVHPPPTESDTGTNVSNNDDSSTGQPPSGGEDKLLLAMCRTIR
KETGWQERTLRQACDWATGGYML back to topmRNA from alignment at Scaffold_360:87959..88269+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft419_12a-0001 ID=EsuBft419_12a-0001|Name=EsuBft419_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=311bp|location=Sequence derived from alignment at Scaffold_360:87959..88269+ (Ectocarpus subulatus male Bft15b)
ATGGTGGTGGCGGCAGAGGCAGGCGTGCATCCTCCGCCTACAGAGAGCGA
CACCGGTACCAACGTCAGCAACAATGACGATAGCAGCACGGGTCAGCCGC
CGTCCGGAGGGGAGGATAAGCTACTCCTGGCAATGTGCCGGACCATCAGG
AAGGAGACGGGGTGGCAGGAGAGGACGCTGCGGCAAGCCTGCGACTGGGC
CACAGGTGCGTCGAGCGGATGGGAGGCGTCATGCCGCAAGCGCATCTACT
TATTTGCTTCTTCCCTGGTTGCTTTATACTGCTGCTGCCGCCAGGTGGCT
ATATGTTGTGA back to topCoding sequence (CDS) from alignment at Scaffold_360:87959..88269+ >EsuBft419_12a-0001 ID=EsuBft419_12a-0001|Name=EsuBft419_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=222bp|location=Sequence derived from alignment at Scaffold_360:87959..88269+ (Ectocarpus subulatus male Bft15b)
ATGGTGGTGGCGGCAGAGGCAGGCGTGCATCCTCCGCCTACAGAGAGCGA
CACCGGTACCAACGTCAGCAACAATGACGATAGCAGCACGGGTCAGCCGC
CGTCCGGAGGGGAGGATAAGCTACTCCTGGCAATGTGCCGGACCATCAGG
AAGGAGACGGGGTGGCAGGAGAGGACGCTGCGGCAAGCCTGCGACTGGGC
CACAGGTGGCTATATGTTGTGA back to top
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