EsuBft419_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft419_12a-0001
Unique NameEsuBft419_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:87959..88269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFA1
ProteomeIdEsuBft419_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length22
Hectar predicted targeting categoryother localisation
Evalue4.37e-39
EggNOG OGsCOG5307@1|root,KOG0929@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K18442
KEGG Pathwayko04144,map04144
Descriptionregulation of ARF protein signal transduction
COG categoryK
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft419_12aEsuBft419_12aEctocarpus subulatus male Bft15bgeneScaffold_360 87959..88269 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_12a-0001-exonEsuBft419_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 87959..88163 +
EsuBft419_12a-0001-exonagat-exon-28365Ectocarpus subulatus male Bft15bexonScaffold_360 88253..88269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_12a-0001-cdsEsuBft419_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 87959..88163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_12a-0001EsuBft419_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 87959..88269 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft419_12a-0001 ID=EsuBft419_12a-0001|Name=EsuBft419_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=222bp|location=Sequence derived from alignment at Scaffold_360:87959..88269+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTGGCGGCAGAGGCAGGCGTGCATCCTCCGCCTACAGAGAGCGA
CACCGGTACCAACGTCAGCAACAATGACGATAGCAGCACGGGTCAGCCGC
CGTCCGGAGGGGAGGATAAGCTACTCCTGGCAATGTGCCGGACCATCAGG
AAGGAGACGGGGTGGCAGGAGAGGACGCTGCGGCAAGCCTGCGACTGGGC
CACAGGTGGCTATATGTTGTGA
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protein sequence of EsuBft419_12a-0001

>EsuBft419_12 ID=EsuBft419_12|Name=EsuBft419_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=73bp
MVVAAEAGVHPPPTESDTGTNVSNNDDSSTGQPPSGGEDKLLLAMCRTIR
KETGWQERTLRQACDWATGGYML
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mRNA from alignment at Scaffold_360:87959..88269+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft419_12a-0001 ID=EsuBft419_12a-0001|Name=EsuBft419_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=311bp|location=Sequence derived from alignment at Scaffold_360:87959..88269+ (Ectocarpus subulatus male Bft15b)
ATGGTGGTGGCGGCAGAGGCAGGCGTGCATCCTCCGCCTACAGAGAGCGA
CACCGGTACCAACGTCAGCAACAATGACGATAGCAGCACGGGTCAGCCGC
CGTCCGGAGGGGAGGATAAGCTACTCCTGGCAATGTGCCGGACCATCAGG
AAGGAGACGGGGTGGCAGGAGAGGACGCTGCGGCAAGCCTGCGACTGGGC
CACAGGTGCGTCGAGCGGATGGGAGGCGTCATGCCGCAAGCGCATCTACT
TATTTGCTTCTTCCCTGGTTGCTTTATACTGCTGCTGCCGCCAGGTGGCT
ATATGTTGTGA
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Coding sequence (CDS) from alignment at Scaffold_360:87959..88269+

>EsuBft419_12a-0001 ID=EsuBft419_12a-0001|Name=EsuBft419_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=222bp|location=Sequence derived from alignment at Scaffold_360:87959..88269+ (Ectocarpus subulatus male Bft15b)
ATGGTGGTGGCGGCAGAGGCAGGCGTGCATCCTCCGCCTACAGAGAGCGA
CACCGGTACCAACGTCAGCAACAATGACGATAGCAGCACGGGTCAGCCGC
CGTCCGGAGGGGAGGATAAGCTACTCCTGGCAATGTGCCGGACCATCAGG
AAGGAGACGGGGTGGCAGGAGAGGACGCTGCGGCAAGCCTGCGACTGGGC
CACAGGTGGCTATATGTTGTGA
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