Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 109760.SPPG_07441T0 |
| ProteomeId | EsuBft419_10 |
| Protein domains | PTHR11076 |
| Protein domains | IPR001357 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | dna repair protein rev1 os:mus musculus gn:rev1 pe:1 sv:1 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 4751|Fungi |
| Length | 960 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.79e-18 |
| EggNOG OGs | COG0389@1|root,KOG2093@2759|Eukaryota,3A7UN@33154|Opisthokonta,3P5TJ@4751|Fungi |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | breast cancer carboxy-terminal domain |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0034645 |
| GO | 0016779 |
| GO | 0048856 |
| GO | 0006281 |
| GO | 0005488 |
| GO | 0044767 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft419_10a-0001 ID=EsuBft419_10a-0001|Name=EsuBft419_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=960bp|location=Sequence derived from alignment at Scaffold_360:71297..73978+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGACTGCTGCGCGGCTTGAGGCTGGCCTCTCCTCTCTCGTTCCCTTGGTT
CACAGAGATGGATGCATTCCTGCTGAAGAAGGACCCATCGGCGGCAGCGC
GGTTGGGCTCTGGCGGCAAGCAACAAACAAAGTGCCAATTCTTGTACAAT
CCAAATCCTCGCCAATTCGTCTTCCCCGCTCCCAACCTGTCCAACGACGG
CCGCAGTGACAAGAAAGGGCCACCCCTTGGCGGCGGGGGAGCATCAGGGT
ACTGGCAGTTCCGTACTTCCAAACTTTTGGAGCAAGCACCTGCGGGCGTG
TCGGAGATTTTCGCGGGCCTGAGCTTCTATTTTAATGGACGCAGTGGGGA
CAAACAAACGATGCACCTAAAGGGTGCGGTGAGCAAACACGGCGGCCGCA
CCACGCCGTTCATGTCGATGAAGGGAGTCACGCACGTTATCGCGGAGAAT
CTGAGCGCGGTCAAGACGGACAAGGCCATGAAGTCGCTCAAGATGAAGGT
GGTACACCCAGACTGGGTGAATCGTTGCATCGCCGAGGGAAAGCTGCTCC
CCGACGCTCCCTTCCGCGTGGTGCGCAGCCAGAAGCTAGGCATGGACAAA
TTCTTCGGTTCGTCCTCGTCCGCTCCTGTCTCTTCCCCCTCTCCCGGCTG
CAATGACGATGAAGGCCGACGAAATAATCGTGCCCAGAAGGAGAACGGGA
AGGAGGCCAAGCCAAGGCACCACCGATCGGTCCCAAGAAAGTCTGGGGCA
GTAGTGAGAGCTGGTGGCATTGAGGGGAGACGCGGGAGAAGAAACAGGGA
GAGTCGAGGGCGAGGCAGGCGGCAAGGTGCAAGAGAGGGGAGCGGAAGCG
AAAGCGTCCACGAAGTCGGCATTCCGACGGTCGACAGGAAGAGTAGCGGC
GGCAGCAGCAGTAGCAGCAGCAACAGCAGCAAGAGCAACAGGAAGGACAA
GCTGGTGTGA back to topprotein sequence of EsuBft419_10a-0001 >EsuBft419_10 ID=EsuBft419_10|Name=EsuBft419_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=300bp
MDAFLLKKDPSAAARLGSGGKQQTKCQFLYNPNPRQFVFPAPNLSNDGRS
DKKGPPLGGGGASGYWQFRTSKLLEQAPAGVSEIFAGLSFYFNGRSGDKQ
TMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKSLKMKVVH
PDWVNRCIAEGKLLPDAPFRVVRSQKLGMDKFFGSSSSAPVSSPSPGCND
DEGRRNNRAQKENGKEAKPRHHRSVPRKSGAVVRAGGIEGRRGRRNRESR
GRGRRQGAREGSGSESVHEVGIPTVDRKSSGGSSSSSSNSSKSNRKDKLV back to topmRNA from alignment at Scaffold_360:71297..73978+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft419_10a-0001 ID=EsuBft419_10a-0001|Name=EsuBft419_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2682bp|location=Sequence derived from alignment at Scaffold_360:71297..73978+ (Ectocarpus subulatus male Bft15b)
TGACTGCTGCGCGGCTTGAGGCTGGCCTCTCCTCTCTCGTTCCCTTGGTT
CACAGAGATGGATGCATTCCTGCTGAAGAAGGACCCATCGGCGGCAGCGC
GGTTGGGCTCTGGCGGCAAGCAACAAACAAAGTGCCAATTCTTGTACAAT
CCAAATCCTCGCCAATTCGTCTTCCCCGCTCCCAACCTGTCCAACGACGG
CCGCAGTGACAAGAAAGGGCCACCCCTTGGCGGCGGGGGAGCATCAGGGT
ACTGGCAGTTCCGTACTTCCAAACGTGAGACAGATGATAAGGTTTTCGTC
CCCCCGCCCGTCCGTTTTTGTCGCTCGTCTCTCTCTAGAATTTTGTTCCA
ACGGCCGCATGTTGACCTACTGCTGTGGTCTACATGTACCATTATTACCA
TTTTTTCCGCTGTTGGGGGCAACGTATTGCGCGCGCTTCGGGTTGTGGCA
CGTACGGCTGTTACTGCTGTAGGACAATGCTGTAACACCGCCTGTCTGTG
CGATATTCCGTAGGGCGTTTGGTTTCGTGAGTCGCCCCAGGATCTAAGAT
TTCATACTCCTCTTTTGTCGGTTTGGGCGCATTTCGAGGCTGAACAGAAC
CACGATGTATTCTACGTGTCGGTGATTAGTTTTTAAGTCTAGACTACTGC
TGATCTTCGGACGTGGATGCTCTGTTGATGAGGTGTTCGATTCCCAAGTT
TTCTATCTCGAAAGTGCTGTCATGTGAGATCAAGTTTACGATTAAGGTTG
TCATGTCAAAGAATAGTATGTTGTAGCTGGCTGACAGCAGTGCAGACGAC
GCTTGTATATCTACCACCAACCACCGCAGTTTTGGAGCAAGCACCTGCGG
GCGTGTCGGAGATTTTCGCGGGCCTGAGCTTCTATTTTAATGGACGCAGT
GGGGACAAACAAACGTGAGACAGGGAGGGGTGGGTGGTTGTCATACTGTT
TCAATCGGATTCTGGCCGCATAAACTTGGAGTTGCAGGTATCTCCGTAGT
TTCTGAAGCTGACCATGAGGCTCGTGGTTGGTATTTCATTGAATGTATTC
CTTGTCGCTGTTCCCGCCGCCCGATCTCGCCCGCCTTACGACCCTTTCCC
GTCTGGCCCTGCCCTTCATCGGCACGTCTTGGGTGTCGTGCGTGTTCCTA
TAAACACTGATACCGTGTTGCTGCTACTACTGCTGTTGCCTCTCTGCAGG
ATGCACCTAAAGGGTGCGGTGAGCAAACACGGCGGCCGCACCACGCCGTT
CATGTCGATGAAGGGAGTCACGCACGTTATCGCGGAGAATCTGAGCGCGG
TCAAGACGGACAAGGCCATGAAGGTAGCCGTGGCCTTGCCCGTATCATAC
GGCACTCTCTCCGCGAGTTGGAACCTGCTGTCAACAATATTCGTAACGAA
GTTTGTGCCGCGAGTGTGATAGCTTTCCCTCAGATTCATGTTTATGGTAT
TGACAACACCTTAATTCCCCTCTGGCGTGGCGTCTTTTTGCTGAACCATG
GCAACAACCACTTCCAATTGGACCCACGTACTTGACCTTGTCTACTGGAA
TCAGTCGCTCAAGATGAAGGTGGTACACCCAGGTGAGGCCGGTTGCAACC
AACGCATGATTGCACCGTACATCGTCAAAATGAAACGCTTCGCCTGACAG
TCTGTGCTGACGATGAGTGGTACAGGAGCCAGAGGCACATAAATCTCTGT
TGTGTAGAGGGGATGTCAGGGTTTAGTTTGGAGATCCACAATGGCGTGCA
GCCTTGGCGTATTTCATCTTTTGCTATCAGACACACGTGTGACATGTCCG
GACGCTGTGGTGTTTTTCCTTTCCCTGGCACACAGCAAGCCTCACGTGCT
CATGTCTCACTTGTGTGTAGCATGCTCACATACGCACGTCCTCGCTTTGC
CTTGACCGCAGGGTCCTGCACAGAGGTACGCAACCGACATAAATCAATGA
AATCCGTCTTTGCAGAGTCACCGATCGTTTTGAGCGTGAGCCGACCCCCA
CCTCCACCGCCCGCCGCCCGCCGCTTCCTTCCTGTTGACCACGATCACGA
CGACGCTGCTTGAAAAAAAGACTGGGTGAATCGTTGCATCGCCGAGGGAA
AGCTGCTCCCCGACGCTCCCTTCCGCGTGGTGCGCAGCCAGAAGCTAGGC
ATGGACAAATTCTTCGGTTCGTCCTCGTCCGCTCCTGTCTCTTCCCCCTC
TCCCGGCTGCAATGACGATGAAGGCCGACGAAATAATCGTGCCCAGAAGG
AGAACGGGAAGGAGGCCAAGCCAAGGCACCACCGATCGGTCCCAAGAAAG
TCTGGGGCAGTAGTGAGAGCTGGTGGCATTGAGGGGAGACGCGGGAGAAG
AAACAGGGAGAGTCGAGGGCGAGGCAGGCGGCAAGGTGCAAGAGAGGGGA
GCGGAAGCGAAAGCGTCCACGAAGTCGGCATTCCGACGGTCGACAGGAAG
AGTAGCGGCGGCAGCAGCAGTAGCAGCAGCAACAGCAGCAAGAGCAACAG
GAAGGGTATGAGGGAGATGAATGGCCGCACTGAGATAAATAGTGGCCGTT
GCCCCGAAGTTGTCTCCTCAATGCACAACCCTTCGGGTCCAGTTGAGCAT
GGGTCGGCCGCACGGAAACACCTGCTGGGAGGAGCCAATACTTCGCCGAC
CACAAGAAAGAGACGCAGACAAGCTGGTGTGA back to topCoding sequence (CDS) from alignment at Scaffold_360:71297..73978+ >EsuBft419_10a-0001 ID=EsuBft419_10a-0001|Name=EsuBft419_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=903bp|location=Sequence derived from alignment at Scaffold_360:71297..73978+ (Ectocarpus subulatus male Bft15b)
ATGGATGCATTCCTGCTGAAGAAGGACCCATCGGCGGCAGCGCGGTTGGG
CTCTGGCGGCAAGCAACAAACAAAGTGCCAATTCTTGTACAATCCAAATC
CTCGCCAATTCGTCTTCCCCGCTCCCAACCTGTCCAACGACGGCCGCAGT
GACAAGAAAGGGCCACCCCTTGGCGGCGGGGGAGCATCAGGGTACTGGCA
GTTCCGTACTTCCAAACTTTTGGAGCAAGCACCTGCGGGCGTGTCGGAGA
TTTTCGCGGGCCTGAGCTTCTATTTTAATGGACGCAGTGGGGACAAACAA
ACGATGCACCTAAAGGGTGCGGTGAGCAAACACGGCGGCCGCACCACGCC
GTTCATGTCGATGAAGGGAGTCACGCACGTTATCGCGGAGAATCTGAGCG
CGGTCAAGACGGACAAGGCCATGAAGTCGCTCAAGATGAAGGTGGTACAC
CCAGACTGGGTGAATCGTTGCATCGCCGAGGGAAAGCTGCTCCCCGACGC
TCCCTTCCGCGTGGTGCGCAGCCAGAAGCTAGGCATGGACAAATTCTTCG
GTTCGTCCTCGTCCGCTCCTGTCTCTTCCCCCTCTCCCGGCTGCAATGAC
GATGAAGGCCGACGAAATAATCGTGCCCAGAAGGAGAACGGGAAGGAGGC
CAAGCCAAGGCACCACCGATCGGTCCCAAGAAAGTCTGGGGCAGTAGTGA
GAGCTGGTGGCATTGAGGGGAGACGCGGGAGAAGAAACAGGGAGAGTCGA
GGGCGAGGCAGGCGGCAAGGTGCAAGAGAGGGGAGCGGAAGCGAAAGCGT
CCACGAAGTCGGCATTCCGACGGTCGACAGGAAGAGTAGCGGCGGCAGCA
GCAGTAGCAGCAGCAACAGCAGCAAGAGCAACAGGAAGGACAAGCTGGTG
TGA back to top
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