EsuBft419_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft419_10a-0001
Unique NameEsuBft419_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:71297..73978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog109760.SPPG_07441T0
ProteomeIdEsuBft419_10
Protein domainsPTHR11076
Protein domainsIPR001357
Ownerapollo_admin@sb-roscoff.fr
Notedna repair protein rev1 os:mus musculus gn:rev1 pe:1 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl4751|Fungi
Length960
Hectar predicted targeting categoryother localisation
Evalue1.79e-18
EggNOG OGsCOG0389@1|root,KOG2093@2759|Eukaryota,3A7UN@33154|Opisthokonta,3P5TJ@4751|Fungi
Date last modified2016-06-13
Date creation2016-06-13
Descriptionbreast cancer carboxy-terminal domain
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0034645
GO0016779
GO0048856
GO0006281
GO0005488
GO0044767
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft419_10aEsuBft419_10aEctocarpus subulatus male Bft15bgeneScaffold_360 71297..73978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_10a-0001EsuBft419_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 71354..73978 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_10a-0001-exonEsuBft419_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 71297..71570 +
EsuBft419_10a-0001-exonagat-exon-28347Ectocarpus subulatus male Bft15bexonScaffold_360 72126..72210 +
EsuBft419_10a-0001-exonagat-exon-28345Ectocarpus subulatus male Bft15bexonScaffold_360 72496..72619 +
EsuBft419_10a-0001-exonagat-exon-28346Ectocarpus subulatus male Bft15bexonScaffold_360 72851..72878 +
EsuBft419_10a-0001-exonagat-exon-28343Ectocarpus subulatus male Bft15bexonScaffold_360 73367..73801 +
EsuBft419_10a-0001-exonagat-exon-28344Ectocarpus subulatus male Bft15bexonScaffold_360 73965..73978 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_10a-0001-exonagat-five_prime_utr-9795Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_360 71297..71353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_10a-0001-cdsEsuBft419_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 71354..71570 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft419_10a-0001 ID=EsuBft419_10a-0001|Name=EsuBft419_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=960bp|location=Sequence derived from alignment at Scaffold_360:71297..73978+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGACTGCTGCGCGGCTTGAGGCTGGCCTCTCCTCTCTCGTTCCCTTGGTT
CACAGAGATGGATGCATTCCTGCTGAAGAAGGACCCATCGGCGGCAGCGC
GGTTGGGCTCTGGCGGCAAGCAACAAACAAAGTGCCAATTCTTGTACAAT
CCAAATCCTCGCCAATTCGTCTTCCCCGCTCCCAACCTGTCCAACGACGG
CCGCAGTGACAAGAAAGGGCCACCCCTTGGCGGCGGGGGAGCATCAGGGT
ACTGGCAGTTCCGTACTTCCAAACTTTTGGAGCAAGCACCTGCGGGCGTG
TCGGAGATTTTCGCGGGCCTGAGCTTCTATTTTAATGGACGCAGTGGGGA
CAAACAAACGATGCACCTAAAGGGTGCGGTGAGCAAACACGGCGGCCGCA
CCACGCCGTTCATGTCGATGAAGGGAGTCACGCACGTTATCGCGGAGAAT
CTGAGCGCGGTCAAGACGGACAAGGCCATGAAGTCGCTCAAGATGAAGGT
GGTACACCCAGACTGGGTGAATCGTTGCATCGCCGAGGGAAAGCTGCTCC
CCGACGCTCCCTTCCGCGTGGTGCGCAGCCAGAAGCTAGGCATGGACAAA
TTCTTCGGTTCGTCCTCGTCCGCTCCTGTCTCTTCCCCCTCTCCCGGCTG
CAATGACGATGAAGGCCGACGAAATAATCGTGCCCAGAAGGAGAACGGGA
AGGAGGCCAAGCCAAGGCACCACCGATCGGTCCCAAGAAAGTCTGGGGCA
GTAGTGAGAGCTGGTGGCATTGAGGGGAGACGCGGGAGAAGAAACAGGGA
GAGTCGAGGGCGAGGCAGGCGGCAAGGTGCAAGAGAGGGGAGCGGAAGCG
AAAGCGTCCACGAAGTCGGCATTCCGACGGTCGACAGGAAGAGTAGCGGC
GGCAGCAGCAGTAGCAGCAGCAACAGCAGCAAGAGCAACAGGAAGGACAA
GCTGGTGTGA
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protein sequence of EsuBft419_10a-0001

>EsuBft419_10 ID=EsuBft419_10|Name=EsuBft419_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=300bp
MDAFLLKKDPSAAARLGSGGKQQTKCQFLYNPNPRQFVFPAPNLSNDGRS
DKKGPPLGGGGASGYWQFRTSKLLEQAPAGVSEIFAGLSFYFNGRSGDKQ
TMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKSLKMKVVH
PDWVNRCIAEGKLLPDAPFRVVRSQKLGMDKFFGSSSSAPVSSPSPGCND
DEGRRNNRAQKENGKEAKPRHHRSVPRKSGAVVRAGGIEGRRGRRNRESR
GRGRRQGAREGSGSESVHEVGIPTVDRKSSGGSSSSSSNSSKSNRKDKLV
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mRNA from alignment at Scaffold_360:71297..73978+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft419_10a-0001 ID=EsuBft419_10a-0001|Name=EsuBft419_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2682bp|location=Sequence derived from alignment at Scaffold_360:71297..73978+ (Ectocarpus subulatus male Bft15b)
TGACTGCTGCGCGGCTTGAGGCTGGCCTCTCCTCTCTCGTTCCCTTGGTT
CACAGAGATGGATGCATTCCTGCTGAAGAAGGACCCATCGGCGGCAGCGC
GGTTGGGCTCTGGCGGCAAGCAACAAACAAAGTGCCAATTCTTGTACAAT
CCAAATCCTCGCCAATTCGTCTTCCCCGCTCCCAACCTGTCCAACGACGG
CCGCAGTGACAAGAAAGGGCCACCCCTTGGCGGCGGGGGAGCATCAGGGT
ACTGGCAGTTCCGTACTTCCAAACGTGAGACAGATGATAAGGTTTTCGTC
CCCCCGCCCGTCCGTTTTTGTCGCTCGTCTCTCTCTAGAATTTTGTTCCA
ACGGCCGCATGTTGACCTACTGCTGTGGTCTACATGTACCATTATTACCA
TTTTTTCCGCTGTTGGGGGCAACGTATTGCGCGCGCTTCGGGTTGTGGCA
CGTACGGCTGTTACTGCTGTAGGACAATGCTGTAACACCGCCTGTCTGTG
CGATATTCCGTAGGGCGTTTGGTTTCGTGAGTCGCCCCAGGATCTAAGAT
TTCATACTCCTCTTTTGTCGGTTTGGGCGCATTTCGAGGCTGAACAGAAC
CACGATGTATTCTACGTGTCGGTGATTAGTTTTTAAGTCTAGACTACTGC
TGATCTTCGGACGTGGATGCTCTGTTGATGAGGTGTTCGATTCCCAAGTT
TTCTATCTCGAAAGTGCTGTCATGTGAGATCAAGTTTACGATTAAGGTTG
TCATGTCAAAGAATAGTATGTTGTAGCTGGCTGACAGCAGTGCAGACGAC
GCTTGTATATCTACCACCAACCACCGCAGTTTTGGAGCAAGCACCTGCGG
GCGTGTCGGAGATTTTCGCGGGCCTGAGCTTCTATTTTAATGGACGCAGT
GGGGACAAACAAACGTGAGACAGGGAGGGGTGGGTGGTTGTCATACTGTT
TCAATCGGATTCTGGCCGCATAAACTTGGAGTTGCAGGTATCTCCGTAGT
TTCTGAAGCTGACCATGAGGCTCGTGGTTGGTATTTCATTGAATGTATTC
CTTGTCGCTGTTCCCGCCGCCCGATCTCGCCCGCCTTACGACCCTTTCCC
GTCTGGCCCTGCCCTTCATCGGCACGTCTTGGGTGTCGTGCGTGTTCCTA
TAAACACTGATACCGTGTTGCTGCTACTACTGCTGTTGCCTCTCTGCAGG
ATGCACCTAAAGGGTGCGGTGAGCAAACACGGCGGCCGCACCACGCCGTT
CATGTCGATGAAGGGAGTCACGCACGTTATCGCGGAGAATCTGAGCGCGG
TCAAGACGGACAAGGCCATGAAGGTAGCCGTGGCCTTGCCCGTATCATAC
GGCACTCTCTCCGCGAGTTGGAACCTGCTGTCAACAATATTCGTAACGAA
GTTTGTGCCGCGAGTGTGATAGCTTTCCCTCAGATTCATGTTTATGGTAT
TGACAACACCTTAATTCCCCTCTGGCGTGGCGTCTTTTTGCTGAACCATG
GCAACAACCACTTCCAATTGGACCCACGTACTTGACCTTGTCTACTGGAA
TCAGTCGCTCAAGATGAAGGTGGTACACCCAGGTGAGGCCGGTTGCAACC
AACGCATGATTGCACCGTACATCGTCAAAATGAAACGCTTCGCCTGACAG
TCTGTGCTGACGATGAGTGGTACAGGAGCCAGAGGCACATAAATCTCTGT
TGTGTAGAGGGGATGTCAGGGTTTAGTTTGGAGATCCACAATGGCGTGCA
GCCTTGGCGTATTTCATCTTTTGCTATCAGACACACGTGTGACATGTCCG
GACGCTGTGGTGTTTTTCCTTTCCCTGGCACACAGCAAGCCTCACGTGCT
CATGTCTCACTTGTGTGTAGCATGCTCACATACGCACGTCCTCGCTTTGC
CTTGACCGCAGGGTCCTGCACAGAGGTACGCAACCGACATAAATCAATGA
AATCCGTCTTTGCAGAGTCACCGATCGTTTTGAGCGTGAGCCGACCCCCA
CCTCCACCGCCCGCCGCCCGCCGCTTCCTTCCTGTTGACCACGATCACGA
CGACGCTGCTTGAAAAAAAGACTGGGTGAATCGTTGCATCGCCGAGGGAA
AGCTGCTCCCCGACGCTCCCTTCCGCGTGGTGCGCAGCCAGAAGCTAGGC
ATGGACAAATTCTTCGGTTCGTCCTCGTCCGCTCCTGTCTCTTCCCCCTC
TCCCGGCTGCAATGACGATGAAGGCCGACGAAATAATCGTGCCCAGAAGG
AGAACGGGAAGGAGGCCAAGCCAAGGCACCACCGATCGGTCCCAAGAAAG
TCTGGGGCAGTAGTGAGAGCTGGTGGCATTGAGGGGAGACGCGGGAGAAG
AAACAGGGAGAGTCGAGGGCGAGGCAGGCGGCAAGGTGCAAGAGAGGGGA
GCGGAAGCGAAAGCGTCCACGAAGTCGGCATTCCGACGGTCGACAGGAAG
AGTAGCGGCGGCAGCAGCAGTAGCAGCAGCAACAGCAGCAAGAGCAACAG
GAAGGGTATGAGGGAGATGAATGGCCGCACTGAGATAAATAGTGGCCGTT
GCCCCGAAGTTGTCTCCTCAATGCACAACCCTTCGGGTCCAGTTGAGCAT
GGGTCGGCCGCACGGAAACACCTGCTGGGAGGAGCCAATACTTCGCCGAC
CACAAGAAAGAGACGCAGACAAGCTGGTGTGA
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Coding sequence (CDS) from alignment at Scaffold_360:71297..73978+

>EsuBft419_10a-0001 ID=EsuBft419_10a-0001|Name=EsuBft419_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=903bp|location=Sequence derived from alignment at Scaffold_360:71297..73978+ (Ectocarpus subulatus male Bft15b)
ATGGATGCATTCCTGCTGAAGAAGGACCCATCGGCGGCAGCGCGGTTGGG
CTCTGGCGGCAAGCAACAAACAAAGTGCCAATTCTTGTACAATCCAAATC
CTCGCCAATTCGTCTTCCCCGCTCCCAACCTGTCCAACGACGGCCGCAGT
GACAAGAAAGGGCCACCCCTTGGCGGCGGGGGAGCATCAGGGTACTGGCA
GTTCCGTACTTCCAAACTTTTGGAGCAAGCACCTGCGGGCGTGTCGGAGA
TTTTCGCGGGCCTGAGCTTCTATTTTAATGGACGCAGTGGGGACAAACAA
ACGATGCACCTAAAGGGTGCGGTGAGCAAACACGGCGGCCGCACCACGCC
GTTCATGTCGATGAAGGGAGTCACGCACGTTATCGCGGAGAATCTGAGCG
CGGTCAAGACGGACAAGGCCATGAAGTCGCTCAAGATGAAGGTGGTACAC
CCAGACTGGGTGAATCGTTGCATCGCCGAGGGAAAGCTGCTCCCCGACGC
TCCCTTCCGCGTGGTGCGCAGCCAGAAGCTAGGCATGGACAAATTCTTCG
GTTCGTCCTCGTCCGCTCCTGTCTCTTCCCCCTCTCCCGGCTGCAATGAC
GATGAAGGCCGACGAAATAATCGTGCCCAGAAGGAGAACGGGAAGGAGGC
CAAGCCAAGGCACCACCGATCGGTCCCAAGAAAGTCTGGGGCAGTAGTGA
GAGCTGGTGGCATTGAGGGGAGACGCGGGAGAAGAAACAGGGAGAGTCGA
GGGCGAGGCAGGCGGCAAGGTGCAAGAGAGGGGAGCGGAAGCGAAAGCGT
CCACGAAGTCGGCATTCCGACGGTCGACAGGAAGAGTAGCGGCGGCAGCA
GCAGTAGCAGCAGCAACAGCAGCAAGAGCAACAGGAAGGACAAGCTGGTG
TGA
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