EsuBft4181_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4181_4a-0001
Unique NameEsuBft4181_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:37326..37895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog67593.Physo109528
ProteomeIdEsuBft4181_4
Protein domainsIPR012337
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl67593.Physo109528|-
Length459
Hectar predicted targeting categoryother localisation
Evalue3.88e-33
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QIRP@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiontransposition, RNA-mediated
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0043170
GO0003676
GO0003824
GO0044238
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4181_4aEsuBft4181_4aEctocarpus subulatus male Bft15bgeneScaffold_195 37326..37895 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4181_4a-0001-exonagat-exon-84753Ectocarpus subulatus male Bft15bexonScaffold_195 37326..37781 -
EsuBft4181_4a-0001-exonEsuBft4181_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 37893..37895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4181_4a-0001-cdsEsuBft4181_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 37326..37781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4181_4a-0001EsuBft4181_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 37326..37895 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4181_4a-0001 ID=EsuBft4181_4a-0001|Name=EsuBft4181_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=459bp|location=Sequence derived from alignment at Scaffold_195:37326..37895- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTACGCTGATGCGGACTTTGTGAGCAAGGCAGCAGACCGTAGGTC
GGTATCAGGGGGGATCGTGACATGTGGAGGAGGCGCTGTGTCTTGGTTTT
CCAGAACGCAGATGTGTGTCACGCTTTCGACCACCGAAGCAGAGTACGTC
GCGCTAGGTGACGTAGTGAAGGAGATTTTGAGGCAGATTTGGCGTTTCAT
GTTGCCGCAGGTCGGCATGCCGCGCATCCCCATCTTCGAGGACAACCAGG
GGGCGATTCAACTAGCGCGGAACCCCATCTCAAACTCGAACTCGAAGCAC
ATAGATGTAAGGCACCATTTTCTCAGGGAACTGGTAGAGCGGAAGGAAAT
TTCGGTGATCCACGTGCCGTCGCCGTACCAGCGTGCAGACTTTCATACCA
AGAGTTTGTCGAAGGATGCTTTCGAGTCTCACCGTGATTTTGTGTTGAAT
TTGGCATGA
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protein sequence of EsuBft4181_4a-0001

>EsuBft4181_4 ID=EsuBft4181_4|Name=EsuBft4181_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=152bp
MGYADADFVSKAADRRSVSGGIVTCGGGAVSWFSRTQMCVTLSTTEAEYV
ALGDVVKEILRQIWRFMLPQVGMPRIPIFEDNQGAIQLARNPISNSNSKH
IDVRHHFLRELVERKEISVIHVPSPYQRADFHTKSLSKDAFESHRDFVLN
LA
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mRNA from alignment at Scaffold_195:37326..37895-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4181_4a-0001 ID=EsuBft4181_4a-0001|Name=EsuBft4181_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=570bp|location=Sequence derived from alignment at Scaffold_195:37326..37895- (Ectocarpus subulatus male Bft15b)
ATGGTTTCTAAAGAACTGCGGGGCGTTCCCAAAATCAGATGAGATCTGCG
CACGCACATTTTTTGCGGCGGAACCCCCGCAGAAATAGCACTGGTAGAGG
GATTCATCTTGCAGGGGTACGCTGATGCGGACTTTGTGAGCAAGGCAGCA
GACCGTAGGTCGGTATCAGGGGGGATCGTGACATGTGGAGGAGGCGCTGT
GTCTTGGTTTTCCAGAACGCAGATGTGTGTCACGCTTTCGACCACCGAAG
CAGAGTACGTCGCGCTAGGTGACGTAGTGAAGGAGATTTTGAGGCAGATT
TGGCGTTTCATGTTGCCGCAGGTCGGCATGCCGCGCATCCCCATCTTCGA
GGACAACCAGGGGGCGATTCAACTAGCGCGGAACCCCATCTCAAACTCGA
ACTCGAAGCACATAGATGTAAGGCACCATTTTCTCAGGGAACTGGTAGAG
CGGAAGGAAATTTCGGTGATCCACGTGCCGTCGCCGTACCAGCGTGCAGA
CTTTCATACCAAGAGTTTGTCGAAGGATGCTTTCGAGTCTCACCGTGATT
TTGTGTTGAATTTGGCATGA
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Coding sequence (CDS) from alignment at Scaffold_195:37326..37895-

>EsuBft4181_4a-0001 ID=EsuBft4181_4a-0001|Name=EsuBft4181_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=459bp|location=Sequence derived from alignment at Scaffold_195:37326..37895- (Ectocarpus subulatus male Bft15b)
ATGGGGTACGCTGATGCGGACTTTGTGAGCAAGGCAGCAGACCGTAGGTC
GGTATCAGGGGGGATCGTGACATGTGGAGGAGGCGCTGTGTCTTGGTTTT
CCAGAACGCAGATGTGTGTCACGCTTTCGACCACCGAAGCAGAGTACGTC
GCGCTAGGTGACGTAGTGAAGGAGATTTTGAGGCAGATTTGGCGTTTCAT
GTTGCCGCAGGTCGGCATGCCGCGCATCCCCATCTTCGAGGACAACCAGG
GGGCGATTCAACTAGCGCGGAACCCCATCTCAAACTCGAACTCGAAGCAC
ATAGATGTAAGGCACCATTTTCTCAGGGAACTGGTAGAGCGGAAGGAAAT
TTCGGTGATCCACGTGCCGTCGCCGTACCAGCGTGCAGACTTTCATACCA
AGAGTTTGTCGAAGGATGCTTTCGAGTCTCACCGTGATTTTGTGTTGAAT
TTGGCATGA
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