EsuBft4181_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4181_3a-0001
Unique NameEsuBft4181_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:36412..36765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000000041
ProteomeIdEsuBft4181_3
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noterna-directed dna polymerase from mobile element jockey os:drosophila melanogaster gn:pol pe:1 s [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length354
Hectar predicted targeting categoryother localisation
Evalue1.16e-20
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3CYKV@33213|Bilateria,487I3@7711|Chordata,4962T@7742|Vertebrata,4CKCN@8459|Testudines
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00004,RC00039,RC00041
KEGG koko:K04257,ko:K13506
KEGG ReactionR00851,R09380
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04740,map00561,map00564,map01100,map01110,map04740
KEGG ModuleM00089
EC2.3.1.15
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04030
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4181_3aEsuBft4181_3aEctocarpus subulatus male Bft15bgeneScaffold_195 36412..36765 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4181_3a-0001-exonEsuBft4181_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 36412..36765 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4181_3a-0001-cdsEsuBft4181_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 36412..36765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4181_3a-0001EsuBft4181_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 36412..36765 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4181_3a-0001 ID=EsuBft4181_3a-0001|Name=EsuBft4181_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=354bp|location=Sequence derived from alignment at Scaffold_195:36412..36765+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACGAACCCTTTGTCTTGGGACACCTCCATACCATCCTCGTCAAG
GTGTGGAACGGAGGAGATATTCCGCGAGTGGAAGGATGCAACCATCAAGG
TGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAGCTATAGGGGGATT
TCGCTATTATCTCCCGTGGGCAAGGTCCCCATCAAGATCATCACCAACCG
TCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCG
GATTTCGACTCCGGCGATCCACCGTCGACATGCTGTCCGTCGTGCGCCGC
CTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGTGAAAG
GTAA
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protein sequence of EsuBft4181_3a-0001

>EsuBft4181_3 ID=EsuBft4181_3|Name=EsuBft4181_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=117bp
MTTNPLSWDTSIPSSSRCGTEEIFREWKDATIKVLYKKGDRSNCNSYRGI
SLLSPVGKVPIKIITNRLSAFCEANNILPEEQCGFRLRRSTVDMLSVVRR
LQELGRRKKIPLYMCER
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mRNA from alignment at Scaffold_195:36412..36765+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4181_3a-0001 ID=EsuBft4181_3a-0001|Name=EsuBft4181_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=354bp|location=Sequence derived from alignment at Scaffold_195:36412..36765+ (Ectocarpus subulatus male Bft15b)
ATGACGACGAACCCTTTGTCTTGGGACACCTCCATACCATCCTCGTCAAG
GTGTGGAACGGAGGAGATATTCCGCGAGTGGAAGGATGCAACCATCAAGG
TGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAGCTATAGGGGGATT
TCGCTATTATCTCCCGTGGGCAAGGTCCCCATCAAGATCATCACCAACCG
TCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCG
GATTTCGACTCCGGCGATCCACCGTCGACATGCTGTCCGTCGTGCGCCGC
CTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGTGAAAG
GTAA
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Coding sequence (CDS) from alignment at Scaffold_195:36412..36765+

>EsuBft4181_3a-0001 ID=EsuBft4181_3a-0001|Name=EsuBft4181_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=354bp|location=Sequence derived from alignment at Scaffold_195:36412..36765+ (Ectocarpus subulatus male Bft15b)
ATGACGACGAACCCTTTGTCTTGGGACACCTCCATACCATCCTCGTCAAG
GTGTGGAACGGAGGAGATATTCCGCGAGTGGAAGGATGCAACCATCAAGG
TGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAGCTATAGGGGGATT
TCGCTATTATCTCCCGTGGGCAAGGTCCCCATCAAGATCATCACCAACCG
TCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCG
GATTTCGACTCCGGCGATCCACCGTCGACATGCTGTCCGTCGTGCGCCGC
CTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGTGAAAG
GTAA
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