EsuBft4152_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4152_2a-0001
Unique NameEsuBft4152_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:437318..437551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFI2
ProteomeIdEsuBft4152_2
Ownerapollo_admin@sb-roscoff.fr
Notetransporter os:caenorhabditis elegans gn: pe:3 sv:5 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length234
Hectar predicted targeting categoryother localisation
Evalue5e-31
EggNOG OGsKOG0253@1|root,KOG0253@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionN-methylnicotinate transmembrane transporter activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4152_2aEsuBft4152_2aEctocarpus subulatus male Bft15bgeneScaffold_499 437318..437551 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4152_2a-0001-exonEsuBft4152_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 437318..437551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4152_2a-0001-cdsEsuBft4152_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 437318..437551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4152_2a-0001EsuBft4152_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 437318..437551 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4152_2a-0001 ID=EsuBft4152_2a-0001|Name=EsuBft4152_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=234bp|location=Sequence derived from alignment at Scaffold_499:437318..437551- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCAGAGGCAACAACAAGTTCGTGACGCTAATGAAGACCGCAGT
CGGGCTGGCGATCGGCGCCGACGGGATCGAGGTCACCCTGCTGAGCTACC
TCGTGCCGTGCGTCGCCGCGGAGTGGGGGCTGACGAGCTTCCAGCAAGGG
TCCCTCACCGCGAGCGTCTTCGCTGGCGAGTTGGTGAGAGGATGTTTCCA
ACCAACATGTTGGCAGAGCTACATAAATATGTAG
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protein sequence of EsuBft4152_2a-0001

>EsuBft4152_2 ID=EsuBft4152_2|Name=EsuBft4152_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=77bp
MASRGNNKFVTLMKTAVGLAIGADGIEVTLLSYLVPCVAAEWGLTSFQQG
SLTASVFAGELVRGCFQPTCWQSYINM
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mRNA from alignment at Scaffold_499:437318..437551-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4152_2a-0001 ID=EsuBft4152_2a-0001|Name=EsuBft4152_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=234bp|location=Sequence derived from alignment at Scaffold_499:437318..437551- (Ectocarpus subulatus male Bft15b)
ATGGCCTCCAGAGGCAACAACAAGTTCGTGACGCTAATGAAGACCGCAGT
CGGGCTGGCGATCGGCGCCGACGGGATCGAGGTCACCCTGCTGAGCTACC
TCGTGCCGTGCGTCGCCGCGGAGTGGGGGCTGACGAGCTTCCAGCAAGGG
TCCCTCACCGCGAGCGTCTTCGCTGGCGAGTTGGTGAGAGGATGTTTCCA
ACCAACATGTTGGCAGAGCTACATAAATATGTAG
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Coding sequence (CDS) from alignment at Scaffold_499:437318..437551-

>EsuBft4152_2a-0001 ID=EsuBft4152_2a-0001|Name=EsuBft4152_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=234bp|location=Sequence derived from alignment at Scaffold_499:437318..437551- (Ectocarpus subulatus male Bft15b)
ATGGCCTCCAGAGGCAACAACAAGTTCGTGACGCTAATGAAGACCGCAGT
CGGGCTGGCGATCGGCGCCGACGGGATCGAGGTCACCCTGCTGAGCTACC
TCGTGCCGTGCGTCGCCGCGGAGTGGGGGCTGACGAGCTTCCAGCAAGGG
TCCCTCACCGCGAGCGTCTTCGCTGGCGAGTTGGTGAGAGGATGTTTCCA
ACCAACATGTTGGCAGAGCTACATAAATATGTAG
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