EsuBft414_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft414_6a-0001
Unique Name	EsuBft414_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:1490391..1492885 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft414_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	168
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft414_6a	EsuBft414_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 1490391..1492885 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft414_6a-0001-exon	agat-exon-23446	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1490391..1491478 +
EsuBft414_6a-0001-exon	agat-exon-23445	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1491600..1491882 +
EsuBft414_6a-0001-exon	EsuBft414_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1492568..1492885 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft414_6a-0001-cds	EsuBft414_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 1490391..1491478 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft414_6a-0001	EsuBft414_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 1490391..1492885 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:1490391..1492885+
coding sequence from alignment at Scaffold_523:1490391..1492885+

spliced messenger RNA

>EsuBft414_6a-0001 ID=EsuBft414_6a-0001|Name=EsuBft414_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1689bp|location=Sequence derived from alignment at Scaffold_523:1490391..1492885+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGTCTCGAAGCAAGCTTGTGAAAGCAAGTCGGTCGGGTACGAGAA
AGACCTAGCGGACGGGAACGGCTACTGGGACCTTTTGGGTGAAAACTGCT
GCCGCGGCCACGGCCTCGATGATGGCGTTCTAGCAGGGGAGTTGGCTGAG
AGTGCGGTCGCCTCGGTCGTGCTGCTGAGGTGGGCCATGGAGTGTATTGT
GGCGAACGACGGGGAGGGCGGCGCCGAGGACGGTGATGGCGTCGTGCCAG
GCACAACCGCTCCACGAAATGGGTTAACTACGGCGGACGACGACGAACCG
GCAAAGGCGCCGGTGGCAGAGGATGGGACCCCCAGCATGCAGGGCAAGGC
GGTGAGTGCGACGGCCACAGGCCAGGTTCGCTTAGCGCACTCGGCACGAA
AGCCCAGGGGCAGCGACCGGTTTTCGTTTTCGGGTTCGCTCGAAAGAAAG
TGTGCCAATCACCACGGCGAGGGCGACTGCCGTGGCCCGAGAAAGGCCAT
CGGAAACAAGTCGTTTGCTGCATCGTGTCCCTCACTATCAGAGTCTTCAT
GCAACCGGGAGAGACTCAGAGACAAGAAACCTTTTCCCCGTGAGCTGCCC
TTGTCTGGAGGGCGAAGAGGAGGAGACGGAGGAGGAGGGGGAGGAGGAGG
AGGAGGATGGAAGGGAGAAGAGCAGCAACCGCCGGAGGGCGACCGCGGTC
GCCCGGCCGGCGGGATCGTCGTGACTTCGCCATCTCCTGGAGATGAGGCG
AAGAAGGACGAAAGGCACCGAGAGGGCTGGCGCGACGGAAGAACCCCTAG
GGTTGCCGGCAAAAGCACCGCGTCAGGAGATGAACCGGTGGAGGACATGA
GAACGTTCCCGAAAAGGTACGCAGCGGCACCAAAGATGTACTGTTTTTGG
CTAGTCGGGGCGCCTTCGTTACTTAGCGCGCCATGGAATGATCTACACAA
CCCAGGATCCCCACAGAGGAGGAGCACATCGAGGAACGTTATCTTCGAAG
AAAGGCGCATGGGTCTATTCAAGAGCGTTTCATCCGGGCTCAACCCGTCT
TGCCTGCCTGCCAGCCTGCTCAGTAGTGCAGATCGCACGTGGCTAGCACC
GGCGGCTCACGAGGTCGCCTTGCATGCCCTGGTGTGCTTGCTGAGGGCCG
CGGAGGTCGACCTCTGTGGTCACAGCAGCACGAACAGGCTTCAAACCGAG
TTGGATATGGACACTGTGGGTGGCGGAAGGGCAGTAGTGATGGAGGAAGG
CGTGCTTCTGCTAGTTCTCAAGGCATGCGCGAGGTTCCAAGATCATGGCG
ACGTGGTCAAGATTTGCTGTATGCTGATGCGCGTCGGTGTGATGTGTGCA
TTGCATGGCGCAGGGTTTGAGCGGCCGGTCGGCGGCCCCATTGCGCCAGG
CATGGCTCTCCTAGTCGACAATGGCGTGGAGGGCGTAGTGACGAGGGCAG
CAAAGGCGCACGTCGAAAACCTTTCGGTCACCATGGAAGCTTCGGCGCTG
CTCCATAGCCTCGGAATGAACTCCATCAGGATCGATGCGTCGGGGGCAAC
TTGCTCGGCGCTGCCGCCGGCGCCGCCTACTCCGCAGCCTGCGGGGAAGA
GTGACTTGGAGCCGGCGGCTGTGGTCGTGACCGTTGATGCAGTGACAAAG
GCGAGTGTTGGGGCGTGTCCTCGTTACGAGGGAAGATAG

protein sequence of EsuBft414_6a-0001

>EsuBft414_6 ID=EsuBft414_6|Name=EsuBft414_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=562bp
MLVSKQACESKSVGYEKDLADGNGYWDLLGENCCRGHGLDDGVLAGELAE
SAVASVVLLRWAMECIVANDGEGGAEDGDGVVPGTTAPRNGLTTADDDEP
AKAPVAEDGTPSMQGKAVSATATGQVRLAHSARKPRGSDRFSFSGSLERK
CANHHGEGDCRGPRKAIGNKSFAASCPSLSESSCNRERLRDKKPFPRELP
LSGGRRGGDGGGGGGGGGGWKGEEQQPPEGDRGRPAGGIVVTSPSPGDEA
KKDERHREGWRDGRTPRVAGKSTASGDEPVEDMRTFPKRYAAAPKMYCFW
LVGAPSLLSAPWNDLHNPGSPQRRSTSRNVIFEERRMGLFKSVSSGLNPS
CLPASLLSSADRTWLAPAAHEVALHALVCLLRAAEVDLCGHSSTNRLQTE
LDMDTVGGGRAVVMEEGVLLLVLKACARFQDHGDVVKICCMLMRVGVMCA
LHGAGFERPVGGPIAPGMALLVDNGVEGVVTRAAKAHVENLSVTMEASAL
LHSLGMNSIRIDASGATCSALPPAPPTPQPAGKSDLEPAAVVVTVDAVTK
ASVGACPRYEGR

mRNA from alignment at Scaffold_523:1490391..1492885+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft414_6a-0001 ID=EsuBft414_6a-0001|Name=EsuBft414_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2495bp|location=Sequence derived from alignment at Scaffold_523:1490391..1492885+ (Ectocarpus subulatus male Bft15b)
ATGTTGGTCTCGAAGCAAGCTTGTGAAAGCAAGTCGGTCGGGTACGAGAA
AGACCTAGCGGACGGGAACGGCTACTGGGACCTTTTGGGTGAAAACTGCT
GCCGCGGCCACGGCCTCGATGATGGCGTTCTAGCAGGGGAGTTGGCTGAG
AGTGCGGTCGCCTCGGTCGTGCTGCTGAGGTGGGCCATGGAGTGTATTGT
GGCGAACGACGGGGAGGGCGGCGCCGAGGACGGTGATGGCGTCGTGCCAG
GCACAACCGCTCCACGAAATGGGTTAACTACGGCGGACGACGACGAACCG
GCAAAGGCGCCGGTGGCAGAGGATGGGACCCCCAGCATGCAGGGCAAGGC
GGTGAGTGCGACGGCCACAGGCCAGGTTCGCTTAGCGCACTCGGCACGAA
AGCCCAGGGGCAGCGACCGGTTTTCGTTTTCGGGTTCGCTCGAAAGAAAG
TGTGCCAATCACCACGGCGAGGGCGACTGCCGTGGCCCGAGAAAGGCCAT
CGGAAACAAGTCGTTTGCTGCATCGTGTCCCTCACTATCAGAGTCTTCAT
GCAACCGGGAGAGACTCAGAGACAAGAAACCTTTTCCCCGTGAGCTGCCC
TTGTCTGGAGGGCGAAGAGGAGGAGACGGAGGAGGAGGGGGAGGAGGAGG
AGGAGGATGGAAGGGAGAAGAGCAGCAACCGCCGGAGGGCGACCGCGGTC
GCCCGGCCGGCGGGATCGTCGTGACTTCGCCATCTCCTGGAGATGAGGCG
AAGAAGGACGAAAGGCACCGAGAGGGCTGGCGCGACGGAAGAACCCCTAG
GGTTGCCGGCAAAAGCACCGCGTCAGGAGATGAACCGGTGGAGGACATGA
GAACGTTCCCGAAAAGGTACGCAGCGGCACCAAAGATGTACTGTTTTTGG
CTAGTCGGGGCGCCTTCGTTACTTAGCGCGCCATGGAATGATCTACACAA
CCCAGGATCCCCACAGAGGAGGAGCACATCGAGGAACGTTATCTTCGAAG
AAAGGCGCATGGGTCTATTCAAGAGCGTTTCATCCGGGCTCAACCCGTCT
TGCCTGCCTGCCAGCCTGCTCAGTAGTGCAGATCGCACGTATGCAATGCA
TGAAGAAAAGCACACGTTTTGAGCATCTCTCTCAGGATACGAATATCAAA
CGCTCTACCTGTAACCCTGTGCGTTCCGGAACAACACATGAACATCCTCC
TTTGTTCAGGTGGCTAGCACCGGCGGCTCACGAGGTCGCCTTGCATGCCC
TGGTGTGCTTGCTGAGGGCCGCGGAGGTCGACCTCTGTGGTCACAGCAGC
ACGAACAGGCTTCAAACCGAGTTGGATATGGACACTGTGGGTGGCGGAAG
GGCAGTAGTGATGGAGGAAGGCGTGCTTCTGCTAGTTCTCAAGGCATGCG
CGAGGTTCCAAGATCATGGCGACGTGGTCAAGATTTGCTGTATGCTGATG
CGCGTCGGTGTGATGTGTGCATTGCATGGCGCAGGGTTTGAGGTGAGAAT
GGCGCGGTATTCGTCTGGTCTGGGGATCTCCAAGGAATACCAAAAAAAAA
AGACAAACGTACTTTGCCCCCCCCTGGTATATCACCGCACGGCCAAAGCG
ATGTTGTGACTAGAACACAGCGATGGACTGCCAACCCTCAAATGATCAAG
TCAAGCCAAGCACGCCCTCTTCCCCATCCCCTTGGGTGACCGGGTTTCAC
GTGTTCAAACGAACTGGTTCGTCAGGCAGGAGGAGAAAATAGGAGTCCAT
GGTAGCCCCGTGCCAGGCCCCCTTTGCTGCTTATTTCCACGTCTCAATGG
TGTGGGAACTCCAGCGCGGATAATCCTATACTTCGCGTGTCAGTGGAAGC
CCACAGAGCAATGAAATAAATCCCCGGCAATCCGTGGCCGCAGTCCCTTA
CCCCTCCCATGGGCACAAAGGTGTACAGTGGGGGGGCACGCCGGTATTTC
CCGGCGCATCCACCGGCACTATCCAGAGGAGCCCGGGCTATTCAACGCAC
AGAATAGCCCAGAAATTTTACCGGCGTAAAAAGGGTAACCGGCGTTATTC
AACCGGCGTTGTTGAGGGCCCACTACTGTACCATCACTCACGTCGTCGAA
GCACCCAGACGGTACGAACACCGGGGACCATCACCAAGCCGTCGTCCCAT
CCACCCGAACGAATCCTACCCTCACAGCGGCCGGTCGGCGGCCCCATTGC
GCCAGGCATGGCTCTCCTAGTCGACAATGGCGTGGAGGGCGTAGTGACGA
GGGCAGCAAAGGCGCACGTCGAAAACCTTTCGGTCACCATGGAAGCTTCG
GCGCTGCTCCATAGCCTCGGAATGAACTCCATCAGGATCGATGCGTCGGG
GGCAACTTGCTCGGCGCTGCCGCCGGCGCCGCCTACTCCGCAGCCTGCGG
GGAAGAGTGACTTGGAGCCGGCGGCTGTGGTCGTGACCGTTGATGCAGTG
ACAAAGGCGAGTGTTGGGGCGTGTCCTCGTTACGAGGGAAGATAG

Coding sequence (CDS) from alignment at Scaffold_523:1490391..1492885+

>EsuBft414_6a-0001 ID=EsuBft414_6a-0001|Name=EsuBft414_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1689bp|location=Sequence derived from alignment at Scaffold_523:1490391..1492885+ (Ectocarpus subulatus male Bft15b)
ATGTTGGTCTCGAAGCAAGCTTGTGAAAGCAAGTCGGTCGGGTACGAGAA
AGACCTAGCGGACGGGAACGGCTACTGGGACCTTTTGGGTGAAAACTGCT
GCCGCGGCCACGGCCTCGATGATGGCGTTCTAGCAGGGGAGTTGGCTGAG
AGTGCGGTCGCCTCGGTCGTGCTGCTGAGGTGGGCCATGGAGTGTATTGT
GGCGAACGACGGGGAGGGCGGCGCCGAGGACGGTGATGGCGTCGTGCCAG
GCACAACCGCTCCACGAAATGGGTTAACTACGGCGGACGACGACGAACCG
GCAAAGGCGCCGGTGGCAGAGGATGGGACCCCCAGCATGCAGGGCAAGGC
GGTGAGTGCGACGGCCACAGGCCAGGTTCGCTTAGCGCACTCGGCACGAA
AGCCCAGGGGCAGCGACCGGTTTTCGTTTTCGGGTTCGCTCGAAAGAAAG
TGTGCCAATCACCACGGCGAGGGCGACTGCCGTGGCCCGAGAAAGGCCAT
CGGAAACAAGTCGTTTGCTGCATCGTGTCCCTCACTATCAGAGTCTTCAT
GCAACCGGGAGAGACTCAGAGACAAGAAACCTTTTCCCCGTGAGCTGCCC
TTGTCTGGAGGGCGAAGAGGAGGAGACGGAGGAGGAGGGGGAGGAGGAGG
AGGAGGATGGAAGGGAGAAGAGCAGCAACCGCCGGAGGGCGACCGCGGTC
GCCCGGCCGGCGGGATCGTCGTGACTTCGCCATCTCCTGGAGATGAGGCG
AAGAAGGACGAAAGGCACCGAGAGGGCTGGCGCGACGGAAGAACCCCTAG
GGTTGCCGGCAAAAGCACCGCGTCAGGAGATGAACCGGTGGAGGACATGA
GAACGTTCCCGAAAAGGTACGCAGCGGCACCAAAGATGTACTGTTTTTGG
CTAGTCGGGGCGCCTTCGTTACTTAGCGCGCCATGGAATGATCTACACAA
CCCAGGATCCCCACAGAGGAGGAGCACATCGAGGAACGTTATCTTCGAAG
AAAGGCGCATGGGTCTATTCAAGAGCGTTTCATCCGGGCTCAACCCGTCT
TGCCTGCCTGCCAGCCTGCTCAGTAGTGCAGATCGCACGTGGCTAGCACC
GGCGGCTCACGAGGTCGCCTTGCATGCCCTGGTGTGCTTGCTGAGGGCCG
CGGAGGTCGACCTCTGTGGTCACAGCAGCACGAACAGGCTTCAAACCGAG
TTGGATATGGACACTGTGGGTGGCGGAAGGGCAGTAGTGATGGAGGAAGG
CGTGCTTCTGCTAGTTCTCAAGGCATGCGCGAGGTTCCAAGATCATGGCG
ACGTGGTCAAGATTTGCTGTATGCTGATGCGCGTCGGTGTGATGTGTGCA
TTGCATGGCGCAGGGTTTGAGCGGCCGGTCGGCGGCCCCATTGCGCCAGG
CATGGCTCTCCTAGTCGACAATGGCGTGGAGGGCGTAGTGACGAGGGCAG
CAAAGGCGCACGTCGAAAACCTTTCGGTCACCATGGAAGCTTCGGCGCTG
CTCCATAGCCTCGGAATGAACTCCATCAGGATCGATGCGTCGGGGGCAAC
TTGCTCGGCGCTGCCGCCGGCGCCGCCTACTCCGCAGCCTGCGGGGAAGA
GTGACTTGGAGCCGGCGGCTGTGGTCGTGACCGTTGATGCAGTGACAAAG
GCGAGTGTTGGGGCGTGTCCTCGTTACGAGGGAAGATAG