EsuBft414_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft414_3a-0001
Unique Name	EsuBft414_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:1463536..1466288 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	80637.XP_007768178.1
ProteomeId	EsuBft414_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	80637.XP_007768178.1\|-
Length	108
Hectar predicted targeting category	other localisation
Evalue	2.11e-06
EggNOG OGs	2EG03@1\|root,2SM29@2759\|Eukaryota,3AH23@33154\|Opisthokonta,3PCWP@4751\|Fungi,3V4C0@5204\|Basidiomycota,228SV@155619\|Agaricomycetes
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft414_3a	EsuBft414_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 1463536..1466288 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft414_3a-0001-exon	EsuBft414_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1463536..1463715 +
EsuBft414_3a-0001-exon	agat-exon-23438	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1465205..1465451 +
EsuBft414_3a-0001-exon	agat-exon-23439	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1465627..1466288 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft414_3a-0001-cds	EsuBft414_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 1463536..1463715 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft414_3a-0001	EsuBft414_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 1463536..1466288 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:1463536..1466288+
coding sequence from alignment at Scaffold_523:1463536..1466288+

spliced messenger RNA

>EsuBft414_3a-0001 ID=EsuBft414_3a-0001|Name=EsuBft414_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1089bp|location=Sequence derived from alignment at Scaffold_523:1463536..1466288+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTCGAGCAAGAGATGATCTCCGCCCTACAGCAGTCAGTCAAGCT
GCGCAACACACTCAGCATCGATAGACAGAAGCCACAAAAGTACCGTGTAG
TGCTGTACGCGAGGTCGGGCGACAGCGCTGAGTTGAAATGGCGGAGCGGC
TGGATCACGTCTGGAAAACCACGCGGCCGCACCCGCGACTACAGGAAGGT
GTGGACTCCAATGGGCAAAGAGGAAGCGGTCGCCTGGGGCATTGGCGTTG
ATGCGGTGGAGGAGTCTGAGCGCTTGCCGGATTGCGGTGTCTGGGTTGGT
GTCGATGATCTCGAGGCAGCGCTGGAAGACTTGCCCGCAGACCTGCAAGC
CAGAGTGCAGAGCAAGAAAACCTACCCCGAAGTGAGGCGGGCCATGCTTC
TCTACCAGGACGAAAGAATATTTCGAGCCAACGATGACCATAGGTACGCG
TGGTATCGGGACGGCCAGCACGTGCCCGTCAAGACGTCACAAGGCCAGGG
GATCATGGTGTCGGGGACGATCATCCACAACCTCGGCTTCTTCTCTGCAT
CGCGGGAACAGATCAAGGAAGCGGAGCGCAACCGCAGGAAACGATGCGCT
GCCTCAGTTGCCGCGAAGCGGCGGGGGGAAAAGGTGAAAGTCGAGAAGTT
CCGCCCTATCGACATGCTGCACAAAGACGAGCACGGACGGTACTGGTCCT
ACGACCTCTTCGAGTACGGCAAGAACGAGGAAGGGTACTGGACCGGGCTC
AAGATGCTGGACCACATGGCAGACGTGCTCGACGTGTTCACAGTTCTCTA
CCCTGAGCACAAGCCTGTAGGCCTGTTCGACTGGTCGTCCTGTCGTGATT
GTATGGAGGCCGGCGCACCGTCGGTGAAGAGAATGAACTTGGGTGTCGGT
GGTGTGAGGATCGGAGAAGAGCTTGCGCCGATGGACCCCGTGACCATCCT
CGAAGACACCCCGAACCTCCCAGCGGGCAAGATTCAGCACTTGACGTTTC
GGAGGGGAGACGCCCCCCCCTTCCACTTCCCGCATCTCCGGCCGGCCGAG
TATGTCGGAAAGCTGAAAGGAATGCGGCAGATCTTGTAG

protein sequence of EsuBft414_3a-0001

>EsuBft414_3 ID=EsuBft414_3|Name=EsuBft414_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=362bp
MELEQEMISALQQSVKLRNTLSIDRQKPQKYRVVLYARSGDSAELKWRSG
WITSGKPRGRTRDYRKVWTPMGKEEAVAWGIGVDAVEESERLPDCGVWVG
VDDLEAALEDLPADLQARVQSKKTYPEVRRAMLLYQDERIFRANDDHRYA
WYRDGQHVPVKTSQGQGIMVSGTIIHNLGFFSASREQIKEAERNRRKRCA
ASVAAKRRGEKVKVEKFRPIDMLHKDEHGRYWSYDLFEYGKNEEGYWTGL
KMLDHMADVLDVFTVLYPEHKPVGLFDWSSCRDCMEAGAPSVKRMNLGVG
GVRIGEELAPMDPVTILEDTPNLPAGKIQHLTFRRGDAPPFHFPHLRPAE
YVGKLKGMRQIL

mRNA from alignment at Scaffold_523:1463536..1466288+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft414_3a-0001 ID=EsuBft414_3a-0001|Name=EsuBft414_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2753bp|location=Sequence derived from alignment at Scaffold_523:1463536..1466288+ (Ectocarpus subulatus male Bft15b)
ATGGAGCTCGAGCAAGAGATGATCTCCGCCCTACAGCAGTCAGTCAAGCT
GCGCAACACACTCAGCATCGATAGACAGAAGCCACAAAAGTACCGTGTAG
TGCTGTACGCGAGGTCGGGCGACAGCGCTGAGTTGAAATGGCGGAGCGGC
TGGATCACGTCTGGAAAACCACGCGGCCGCGTTGCCATCGCGGAGAGAAG
CATCCTCGACAATGTTACTGCTGTTGACTGGGAGGCCCTTCAAAAAAAGA
GCTCATCCGATGCATCCGATGCGCCCATGGAGAGCGCACCTCCGCGGGAG
AGCGTAGTTAGAACCGCAGCCCCGGCCATCGGTTCACTGCAAGAACCTGG
TCTTGCAGGTGCGGGAAGATCGCGAGATCCAAACTGGGACGGACGACGTG
ACTACGCCGGACGACCCTTTGGATCGTTGGGGAGGGCTGCCCAGCGGGCG
CGGGCGCTGAGACTGCGCCAAGAACTACAGGACGCCGTTCCTGGGGCGTT
CAACCTGTCTGCCAGCAGCCTGGAAGAAGTCGTGCGGGCTTGGATAGAGT
TCGAACCTGAGTGGGCCGAGGACGCGAAGAAGAAATATCTAAACAAGGGC
ACGTACAATACATCTCAAGCCGCGAAGAAGATAAGGCGTGTGATAGGGGC
GGAGATGAGAGCCCAGTTGCTCGCGGCAGCGGCGGACGAGTTTCGCGCTG
AGAGTGTGGAGACGCTCGACCTCGTCGTGAAGGATGAGGCGAAGTCGATC
AGCGCATTTTATGATCAACGTGTGATTCTTTTCTTCTTCAGAATGCCGTG
CTCGAACCTGGGTCTACACTGTGATTTGCACTGCTGTTTTAGTTGTCAAC
AGGGCTTGGTTGGGGCTGAGTTTGTAGGGCGCCACCACCCCCTCCGAGCT
CCGGCTGCGACCGCCAGCGTAATTTATTGACCAACCTGCATTCTCAGCTA
AAAAAAATACACTCGAAACACTGCTGTCAGAAACACCGCTGTCAAACAAA
TCGGCTACTGAAAATGGAAAGATTTATTGCCGCCCTCGACACTTCCCCTT
CGCGCAGGACACCAACACGGCAGAGAGCGTTTTGTCCAACTACATGCTGG
CGCACATGGTCCAGGTGGCCATGACATTGATCTAGCTGTACACCCAGCAG
CTCAACGGGGTCGACCGGAAGGATGCACCGGCCATCGCAGCAGAGGTTGG
ACGGAGGAGTGCCCCAACAGTACAGCTGTGGGAGCGGGATTTCATCGCGT
GCGGGCGCATCAAGCCACCTGACACAGGTCGCTTCAAGCGCCTGTTTTTG
CTGGAACTCGACGAAGGCGTCTCGAGGCTCGCGAAAGGCTGGGCGCTCGA
GTACTGCGGGATACTCAGCGGGCAAGCCAACAAGACGGCGGAGGATTTCC
GCAAGTGGGTGAACAGCACCATCATGCCGATTCTGGAGGCGCAACAAACG
GAGGACTTCGACCCTTTTCATGGATTGAGAATAAACCTGGTGGAAGGGAA
GGAGAACGAGCCGCCTAGGCACCAAATCTCCCTTTCCACGGCAACAGAGT
GGCTGAAGAAGATGGGATGCGAATACCACGACGGCAAAAAGGGTCTATAC
TTCGATGGCCACGACGACGAGAACACCCTAGCGTACCGGCACGACGAGTT
CCTGTCGGCGCTGTTTGAGACCCGCGACTACAGGAAGGTGTGGACTCCAA
TGGGCAAAGAGGAAGCGGTCGCCTGGGGCATTGGCGTTGATGCGGTGGAG
GAGTCTGAGCGCTTGCCGGATTGCGGTGTCTGGGTTGGTGTCGATGATCT
CGAGGCAGCGCTGGAAGACTTGCCCGCAGACCTGCAAGCCAGAGTGCAGA
GCAAGAAAACCTACCCCGAAGTGAGGCGGGCCATGCTTCTCTACCAGGAC
GAAAGAATATTTCGAGGTTAGTCTATCTAATTTACACAGAGAAAGTTGGC
GCGACTGATTTGTAAATTTATTCCGGACGTGAATAGCAATTTTGCACGCA
ATTCAATATAATTTCGGGGCTGTGACCACAGAGATGTTGACAATGCCACA
CCTGTCGCCCAAAATTATCGGTGTCCTTTTCGAATTTGCAGCCAACGATG
ACCATAGGTACGCGTGGTATCGGGACGGCCAGCACGTGCCCGTCAAGACG
TCACAAGGCCAGGGGATCATGGTGTCGGGGACGATCATCCACAACCTCGG
CTTCTTCTCTGCATCGCGGGAACAGATCAAGGAAGCGGAGCGCAACCGCA
GGAAACGATGCGCTGCCTCAGTTGCCGCGAAGCGGCGGGGGGAAAAGGTG
AAAGTCGAGAAGTTCCGCCCTATCGACATGCTGCACAAAGACGAGCACGG
ACGGTACTGGTCCTACGACCTCTTCGAGTACGGCAAGAACGAGGAAGGGT
ACTGGACCGGGCTCAAGATGCTGGACCACATGGCAGACGTGCTCGACGTG
TTCACAGTTCTCTACCCTGAGCACAAGCCTGTAGGCCTGTTCGACTGGTC
GTCCTGTCGTGATTGTATGGAGGCCGGCGCACCGTCGGTGAAGAGAATGA
ACTTGGGTGTCGGTGGTGTGAGGATCGGAGAAGAGCTTGCGCCGATGGAC
CCCGTGACCATCCTCGAAGACACCCCGAACCTCCCAGCGGGCAAGATTCA
GCACTTGACGTTTCGGAGGGGAGACGCCCCCCCCTTCCACTTCCCGCATC
TCCGGCCGGCCGAGTATGTCGGAAAGCTGAAAGGAATGCGGCAGATCTTG
TAG

Coding sequence (CDS) from alignment at Scaffold_523:1463536..1466288+

>EsuBft414_3a-0001 ID=EsuBft414_3a-0001|Name=EsuBft414_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1089bp|location=Sequence derived from alignment at Scaffold_523:1463536..1466288+ (Ectocarpus subulatus male Bft15b)
ATGGAGCTCGAGCAAGAGATGATCTCCGCCCTACAGCAGTCAGTCAAGCT
GCGCAACACACTCAGCATCGATAGACAGAAGCCACAAAAGTACCGTGTAG
TGCTGTACGCGAGGTCGGGCGACAGCGCTGAGTTGAAATGGCGGAGCGGC
TGGATCACGTCTGGAAAACCACGCGGCCGCACCCGCGACTACAGGAAGGT
GTGGACTCCAATGGGCAAAGAGGAAGCGGTCGCCTGGGGCATTGGCGTTG
ATGCGGTGGAGGAGTCTGAGCGCTTGCCGGATTGCGGTGTCTGGGTTGGT
GTCGATGATCTCGAGGCAGCGCTGGAAGACTTGCCCGCAGACCTGCAAGC
CAGAGTGCAGAGCAAGAAAACCTACCCCGAAGTGAGGCGGGCCATGCTTC
TCTACCAGGACGAAAGAATATTTCGAGCCAACGATGACCATAGGTACGCG
TGGTATCGGGACGGCCAGCACGTGCCCGTCAAGACGTCACAAGGCCAGGG
GATCATGGTGTCGGGGACGATCATCCACAACCTCGGCTTCTTCTCTGCAT
CGCGGGAACAGATCAAGGAAGCGGAGCGCAACCGCAGGAAACGATGCGCT
GCCTCAGTTGCCGCGAAGCGGCGGGGGGAAAAGGTGAAAGTCGAGAAGTT
CCGCCCTATCGACATGCTGCACAAAGACGAGCACGGACGGTACTGGTCCT
ACGACCTCTTCGAGTACGGCAAGAACGAGGAAGGGTACTGGACCGGGCTC
AAGATGCTGGACCACATGGCAGACGTGCTCGACGTGTTCACAGTTCTCTA
CCCTGAGCACAAGCCTGTAGGCCTGTTCGACTGGTCGTCCTGTCGTGATT
GTATGGAGGCCGGCGCACCGTCGGTGAAGAGAATGAACTTGGGTGTCGGT
GGTGTGAGGATCGGAGAAGAGCTTGCGCCGATGGACCCCGTGACCATCCT
CGAAGACACCCCGAACCTCCCAGCGGGCAAGATTCAGCACTTGACGTTTC
GGAGGGGAGACGCCCCCCCCTTCCACTTCCCGCATCTCCGGCCGGCCGAG
TATGTCGGAAAGCTGAAAGGAATGCGGCAGATCTTGTAG