EsuBft414_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft414_18a-0001
Unique NameEsuBft414_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:1572318..1572940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft414_18
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length47
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft414_18aEsuBft414_18aEctocarpus subulatus male Bft15bgeneScaffold_523 1572318..1572940 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft414_18a-0001-exonagat-exon-23500Ectocarpus subulatus male Bft15bexonScaffold_523 1572318..1572478 -
EsuBft414_18a-0001-exonEsuBft414_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 1572624..1572940 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft414_18a-0001-exonagat-three_prime_utr-15314Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 1572318..1572478 -
EsuBft414_18a-0001-exonagat-three_prime_utr-15315Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 1572624..1572763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft414_18a-0001-cdsEsuBft414_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 1572764..1572940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft414_18a-0001EsuBft414_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 1572764..1572940 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft414_18a-0001 ID=EsuBft414_18a-0001|Name=EsuBft414_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=478bp|location=Sequence derived from alignment at Scaffold_523:1572318..1572940- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTTTGACAAGTTGCTGCACAGACCGTGTGCGTCGGTCCTCAGAACG
ATCCCTCCAAGTTCTACGTAGATTATGCCGCAACGACCCGAAACTCTTTG
TTCTGCGGGTCTGCAGGATCGGTCTGTGGACAATCCAGAAGCAAAAGGGT
CCCGAACTCTTCGGAGCGGTACAGTAGGTAGCCTTAGGCAACTGCTCACG
TAGGCGAGACTCCAATCCAGAGACCGCGGAAAACCGTAACAAACGGAATT
CAACCGGAACTACACACAGCGTTACCGAGGGCGACTAGAGCAAGGCCATT
GCCGCGGGCTGCAACAAGCCACCTACCTGCTTACAACTGGCGAGGAGCGC
TCTTGGGAGATGGAGGGTTGGAAGCGGGAGCAGAGGTGGGAGGGGCAACA
AGAAGGGCGTTCGTTGGGGCGATGATTTCTGTCCCCCACCTAAAGAAGGT
TTAGCGGGAATTTCTCGTGTTCGTGAAC
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protein sequence of EsuBft414_18a-0001

>EsuBft414_18 ID=EsuBft414_18|Name=EsuBft414_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MCLTSCCTDRVRRSSERSLQVLRRLCRNDPKLFVLRVCRIGLWTIQKQKG
PELFGAVQ
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mRNA from alignment at Scaffold_523:1572318..1572940-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft414_18a-0001 ID=EsuBft414_18a-0001|Name=EsuBft414_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=623bp|location=Sequence derived from alignment at Scaffold_523:1572318..1572940- (Ectocarpus subulatus male Bft15b)
ATGTGTTTGACAAGTTGCTGCACAGACCGTGTGCGTCGGTCCTCAGAACG
ATCCCTCCAAGTTCTACGTAGATTATGCCGCAACGACCCGAAACTCTTTG
TTCTGCGGGTCTGCAGGATCGGTCTGTGGACAATCCAGAAGCAAAAGGGT
CCCGAACTCTTCGGAGCGGTACAGTAGGTAGCCTTAGGCAACTGCTCACG
TAGGCGAGACTCCAATCCAGAGACCGCGGAAAACCGTAACAAACGGAATT
CAACCGGAACTACACACAGCGTTACCGAGGGCGACTAGAGCAAGGCCATT
GCCGCGGGCTGCAACAAGTTAAGATTCGGTGTGAGTCAACGACTTGTGCC
CAAAAATGTTGCAGCATATAATTTATTGCTTTGAAGAAATAACATATTCT
ACCAAGTAGCCTAGAAGCTGGTGATGTTGTCTTCATGTGTTGTCCGTCTT
CAACCTAAGCAGGCCACCTACCTGCTTACAACTGGCGAGGAGCGCTCTTG
GGAGATGGAGGGTTGGAAGCGGGAGCAGAGGTGGGAGGGGCAACAAGAAG
GGCGTTCGTTGGGGCGATGATTTCTGTCCCCCACCTAAAGAAGGTTTAGC
GGGAATTTCTCGTGTTCGTGAAC
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Coding sequence (CDS) from alignment at Scaffold_523:1572318..1572940-

>EsuBft414_18a-0001 ID=EsuBft414_18a-0001|Name=EsuBft414_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_523:1572318..1572940- (Ectocarpus subulatus male Bft15b)
ATGTGTTTGACAAGTTGCTGCACAGACCGTGTGCGTCGGTCCTCAGAACG
ATCCCTCCAAGTTCTACGTAGATTATGCCGCAACGACCCGAAACTCTTTG
TTCTGCGGGTCTGCAGGATCGGTCTGTGGACAATCCAGAAGCAAAAGGGT
CCCGAACTCTTCGGAGCGGTACAGTAG
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