EsuBft414_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft414_15a-0001
Unique NameEsuBft414_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:1550686..1553271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft414_15
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length177
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft414_15aEsuBft414_15aEctocarpus subulatus male Bft15bgeneScaffold_523 1550686..1553271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft414_15a-0001EsuBft414_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 1550710..1550859 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft414_15a-0001-exonagat-exon-23488Ectocarpus subulatus male Bft15bexonScaffold_523 1550686..1551428 +
EsuBft414_15a-0001-exonEsuBft414_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 1552237..1553271 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft414_15a-0001-exonagat-five_prime_utr-9753Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_523 1550686..1550709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft414_15a-0001-cdsEsuBft414_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 1550710..1550859 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft414_15a-0001-exonagat-three_prime_utr-15311Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 1550860..1551428 +
EsuBft414_15a-0001-exonagat-three_prime_utr-15312Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 1552237..1553271 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft414_15a-0001 ID=EsuBft414_15a-0001|Name=EsuBft414_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1778bp|location=Sequence derived from alignment at Scaffold_523:1550686..1553271+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGCGCCCTCGTTCAAACGACAGCATGTACAAATCGTACCTTCCTGGGAC
AAAACAAGCTCGTGCACACGCATTGGGACAAAGCAGTCGGTCGTTCGGTG
GGTTCGACAACTTCGTTTCTGTTTCTCCTCCGCAACTCCCTCCATGGAGT
CGTGTCAAATCGTTAACCCAATAATTGATAAGGGCGGGGGGGGACAACTA
ACTACGCTTCCATTTGACGGGAGTTTTGTGGAACGAAAGCGATCCCCCGA
CACCAACCTTGTACTAAATCAATAAGACGCGTTCTTCGCATTGAGCTCTC
GTGAATTGTTCCACACGTCGCCTAGGGCGCCGTTTCTCAACAACGTCTGG
TATTTCTCAACCACTGCATTTAGTGCATTGCAGAAGAAGCAACAGTCCGC
TTGTCTGCACTGCCTGGCCCCCCTTCGTAGATACAGACGAACGAGCCTCA
GGAGCGGCGGGTGATGCGACAGGATCAACAACGGAATAGGGACAATCATA
ATTGGGGCTCATGCGTGGATGTTGTATTTTTTGTAGTCTTTGAGGGGAGC
AAAAAAAGCTCCGCATCCTTGTCCCACAGCTTTTGCAACAAAATTGGGGA
GGCCAGTCGTTCAACAGCAGTAGTGCAGCGGTAAGACATCGCGCGTCATC
AAAGCGCTCTGCACATGGTTCGTCGATGAACCTCTGCGGGCGGACGCAAC
AACGACGAAACGGCAACGCAGAGCGAAAAACTCTTGCACACAGGTGGACC
CTCACAAACGCGGGGTAATAGTCCGAGATGTGTGCATGCATGGTTGCATG
GTCATCAGGTTCTCCGTGAATCCATGCCCCCGTCCGTTCTGAGCGCCCCG
TTTTCTCTCTCCCCCCGTGCTGGTGCAAAGGGTTTGCTCAAGAGGGCAGA
GTGTGATGCAGACCCAGAAGATAGTCTACAGCAGCGAGAGCGGCGTAAGC
GCTTCGCGCGCGGGCCGCAGTAGATCGCACACACACATGAAGAATATCCC
GAAACTTGTATCCATGTGGCGGTGCCTCTTTTCTCAGAACGTTCTTCATG
GTCTGTTTGGTGGGGGCGGGGTGTTCTACTCGGTGGCGGACTGCGCGCTT
CCCACACGAACGTTGCTTTCCGATGACGGACCAGCCCGTGGCTAAAGGGC
TTGCCTCTGTGTCCTTGTGTCGGTCAATTGGGATGCGTTGAGACCCAGGA
TGTACGCATGATACCACACCTCCTGAATGAAGCTCGATTGCATAGTCTAC
CAATCTACTCACGCAACATCGAAAGGAGACAACATCAGATGATACCACCT
TTTCTGCAAGGTCTCGACGAGGCGGTGTTGTTCCACAAAATTCGGCCCAT
CACTGACTGTTGTTCCGCTGCAGAGTAAATCGAGCTTCATTTAGAAACAA
ATCCGTCGAAGGGGTGCGGGGAACGTGTGGCATGAAAAATTTCAGACCCT
GTACAACTATGACTAAACAACTAAACAAGAGTTGTGTACGGGTTCAGCGG
AATCAGCTTATTGCACAATATTCTGACCGAGTACTTGTTTGTCAAAACAA
ATATAAGGATCGGAGTTGTACCGGGTGTGAAAAATTTATGAGAATGGTAC
AGAGCAAATTACCCTTTGGAATGATTGTAGAAGTACAGGCTCCAGCTCCA
AGCGACATCCATTTTTACACCTGCAGCAGTATTTCTACATTAGTAGCATT
CTCAGAGATAATCAATCCTCTTGCATCATAGGAAATAGACCTCACGCACT
TCATCTAGGCCTGTCCTCCATCGGCCGT
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protein sequence of EsuBft414_15a-0001

>EsuBft414_15 ID=EsuBft414_15|Name=EsuBft414_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MYKSYLPGTKQARAHALGQSSRSFGGFDNFVSVSPPQLPPWSRVKSLTQ
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mRNA from alignment at Scaffold_523:1550686..1553271+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft414_15a-0001 ID=EsuBft414_15a-0001|Name=EsuBft414_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2586bp|location=Sequence derived from alignment at Scaffold_523:1550686..1553271+ (Ectocarpus subulatus male Bft15b)
TCGCGCCCTCGTTCAAACGACAGCATGTACAAATCGTACCTTCCTGGGAC
AAAACAAGCTCGTGCACACGCATTGGGACAAAGCAGTCGGTCGTTCGGTG
GGTTCGACAACTTCGTTTCTGTTTCTCCTCCGCAACTCCCTCCATGGAGT
CGTGTCAAATCGTTAACCCAATAATTGATAAGGGCGGGGGGGGACAACTA
ACTACGCTTCCATTTGACGGGAGTTTTGTGGAACGAAAGCGATCCCCCGA
CACCAACCTTGTACTAAATCAATAAGACGCGTTCTTCGCATTGAGCTCTC
GTGAATTGTTCCACACGTCGCCTAGGGCGCCGTTTCTCAACAACGTCTGG
TATTTCTCAACCACTGCATTTAGTGCATTGCAGAAGAAGCAACAGTCCGC
TTGTCTGCACTGCCTGGCCCCCCTTCGTAGATACAGACGAACGAGCCTCA
GGAGCGGCGGGTGATGCGACAGGATCAACAACGGAATAGGGACAATCATA
ATTGGGGCTCATGCGTGGATGTTGTATTTTTTGTAGTCTTTGAGGGGAGC
AAAAAAAGCTCCGCATCCTTGTCCCACAGCTTTTGCAACAAAATTGGGGA
GGCCAGTCGTTCAACAGCAGTAGTGCAGCGGTAAGACATCGCGCGTCATC
AAAGCGCTCTGCACATGGTTCGTCGATGAACCTCTGCGGGCGGACGCAAC
AACGACGAAACGGCAACGCAGAGCGAAAAACTCTTGCACACAGGTCCGTT
GCACACACCATCTCCACGCTCAGTCGACTCAGCGGAAAATAATTTTTTGT
TCATGAACACCTGTACACGGAGTTGCAGGAGCAAAGAGTAGGTGACGGCC
ATGTAAGGGCCGGAGATCGGAAAGCGCGCACACACTAAACAAGAGAAAGA
ACCGCGCTCCTAGTGGCGTCTGCTGCGATACAACAGTCCGCCACTCTACA
CGCGGCCTGAGACAGGGGGATAGCTGCCTGTGGGTATAGACTGCTGTGAT
ACCCGAGGCTCGATATTTTCACTCACTACTTGGTGCAATTAGGAGAACGC
GCAACCTCACCAACACAGGCGCCCGTAAGGATCCGTCCTCTGCTCCCACT
GCTGCTCCGGTTCCTCTTCATCCTCTGACGATTCCTCTGCTTTCTTGGTC
TCCTCCTTCTTGGTCTCTGCGCCGTGGGGAATAAGGGTGGGGCGTGGTGC
AAGATTATATTTCGTGCAAACAACCTCGCTTCGTTCGCACGAAGAAATCC
AAATCTACTTGCCTGCTGTTGTCTGTCTGGTGAAAGCTTGAAGTTGGAAA
AGGCCAGCCGCACCCCCACCTTTCTTGTCGGCCTTGGGTTCGAAAGAAGG
CCGGTTCCTCCTCTTGATGATCTTTGACATGAAATTCTCCATGGCTAGGC
GCCTTAGCAGCGGTCTTGGGACAGTCTTGAGTACTGCTAGGGCAGGCAAA
GTGCAAGGCCAAGGGTCGTTGTTGTGCGCTTGTGCCGCTGGCGCGGCGTC
GCCCGGTTCAGTAGTCACCGGTCGGTAAATGTTCGTCGGTAGTTCTAGCA
GGTGGACCCTCACAAACGCGGGGTAATAGTCCGAGATGTGTGCATGCATG
GTTGCATGGTCATCAGGTTCTCCGTGAATCCATGCCCCCGTCCGTTCTGA
GCGCCCCGTTTTCTCTCTCCCCCCGTGCTGGTGCAAAGGGTTTGCTCAAG
AGGGCAGAGTGTGATGCAGACCCAGAAGATAGTCTACAGCAGCGAGAGCG
GCGTAAGCGCTTCGCGCGCGGGCCGCAGTAGATCGCACACACACATGAAG
AATATCCCGAAACTTGTATCCATGTGGCGGTGCCTCTTTTCTCAGAACGT
TCTTCATGGTCTGTTTGGTGGGGGCGGGGTGTTCTACTCGGTGGCGGACT
GCGCGCTTCCCACACGAACGTTGCTTTCCGATGACGGACCAGCCCGTGGC
TAAAGGGCTTGCCTCTGTGTCCTTGTGTCGGTCAATTGGGATGCGTTGAG
ACCCAGGATGTACGCATGATACCACACCTCCTGAATGAAGCTCGATTGCA
TAGTCTACCAATCTACTCACGCAACATCGAAAGGAGACAACATCAGATGA
TACCACCTTTTCTGCAAGGTCTCGACGAGGCGGTGTTGTTCCACAAAATT
CGGCCCATCACTGACTGTTGTTCCGCTGCAGAGTAAATCGAGCTTCATTT
AGAAACAAATCCGTCGAAGGGGTGCGGGGAACGTGTGGCATGAAAAATTT
CAGACCCTGTACAACTATGACTAAACAACTAAACAAGAGTTGTGTACGGG
TTCAGCGGAATCAGCTTATTGCACAATATTCTGACCGAGTACTTGTTTGT
CAAAACAAATATAAGGATCGGAGTTGTACCGGGTGTGAAAAATTTATGAG
AATGGTACAGAGCAAATTACCCTTTGGAATGATTGTAGAAGTACAGGCTC
CAGCTCCAAGCGACATCCATTTTTACACCTGCAGCAGTATTTCTACATTA
GTAGCATTCTCAGAGATAATCAATCCTCTTGCATCATAGGAAATAGACCT
CACGCACTTCATCTAGGCCTGTCCTCCATCGGCCGT
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Coding sequence (CDS) from alignment at Scaffold_523:1550686..1553271+

>EsuBft414_15a-0001 ID=EsuBft414_15a-0001|Name=EsuBft414_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_523:1550686..1553271+ (Ectocarpus subulatus male Bft15b)
ATGTACAAATCGTACCTTCCTGGGACAAAACAAGCTCGTGCACACGCATT
GGGACAAAGCAGTCGGTCGTTCGGTGGGTTCGACAACTTCGTTTCTGTTT
CTCCTCCGCAACTCCCTCCATGGAGTCGTGTCAAATCGTTAACCCAATAA
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