EsuBft414_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft414_13a-0001
Unique NameEsuBft414_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:1536942..1542671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft414_13
Protein domainsIPR001202
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length257
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_002440.1
Date last modified2016-06-13
Date creation2016-06-13
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft414_13aEsuBft414_13aEctocarpus subulatus male Bft15bgeneScaffold_523 1536942..1542671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft414_13a-0001EsuBft414_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 1537112..1540706 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft414_13a-0001-exonEsuBft414_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 1536942..1537172 +
EsuBft414_13a-0001-exonagat-exon-23483Ectocarpus subulatus male Bft15bexonScaffold_523 1537434..1537521 +
EsuBft414_13a-0001-exonagat-exon-23484Ectocarpus subulatus male Bft15bexonScaffold_523 1540421..1542671 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft414_13a-0001-exonagat-five_prime_utr-9751Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_523 1536942..1537111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft414_13a-0001-cdsEsuBft414_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 1537112..1537172 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft414_13a-0001-exonagat-three_prime_utr-15309Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 1540707..1542671 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft414_13a-0001 ID=EsuBft414_13a-0001|Name=EsuBft414_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2570bp|location=Sequence derived from alignment at Scaffold_523:1536942..1542671+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCCCACACCTTCACACAACTCACATCGGCAAGACGCAACGCCACCATCC
GCAGCAGAGCAAAGCCTCGCAAAACTCCGCAAGCAGTGCACGTCGCACGT
ACTCAGTACACTTCACCACCCCAGCCTTCGCAGCGCATCAGCAGCAGCAC
TCATTAACGGGTGACACAGCATGTCGTTCTTCACGAAAGGACTCGCGGGC
ATCTTCAACAACGGAAAGGCTCGCAAGAAAGACGAAGGAAAGGGCTGTGA
CAAGAAGAAGGACAAGAAGGACGAAGGGAGCTGGGAGGAGCTCACGGACG
CCTACGGCCGCACGTACTGGCAGCACAGCAAGACAGGCGAGTGGCACTTC
GGCTACGGTGGCGGCTTTGTCCCTCCCGTTGGGACGGTCAACCCGTCCCC
CATGGGCTACCCCGGCGGCCCGGTCTTCACGCCGTCGCCAGTGCACGGCG
GCACACTCTTCCCTGTCGCTGTCGCCCCCGCTAAGAAGAAGGAGAAGAAG
GAGAAGGGCAAGGGGTGGTGGGAGACGATGTACGACGAAGACGGAGACAA
GTACTGGGAGCACACGGTGACAAAGAAGACCACCTACAAGGACCCTTACT
ACTGAACACGAAGAGCACGAGCAGAAAAGAACGAACAAGAGGTTTGGTTG
TATATAAGCGTGCAGGCTGTCCATGGCGGAGTGGAATGGATGGCGTGTTC
GGGTAATGAGTAAGTGTAGAGTTTCTTCCCGAGGGTGCCCTGGATAAATC
CCGAAAGCTCCAGACTATGGCAGGATGGTTCGGGATAACTAAAAATATGT
CGTCTTGGGGAAATATATGTTGCAGAGGCCCACTTGATGGTAGCAAAGGC
AGAGCTACTGCTGCAGCTCCTTGTAATCTACGCCCCTTTGCGACCACTCG
GCGCCATTCTTTCACGCAAGTCCCCTTGCGTGTGGCATATGTATGTATGT
TGCGTGTCTTTTGTTTTTTTCGTGTATACTGTGACGAAAACATGGGGAAT
GAGTTCTACGATGGGTTGCGACGACAGCAGTGCATTTTCACGCGGCGGGT
AACGAGTGGGGGGGTTGAGTTGGTGTGGGGGTTGCGAGTGGCTGGTTGAG
TTAGAGTTTGTGCTTTGTTCGGATCGTCCTTGTTCTTTGTTTTCGACTAA
GATTCCAGTTGTAGTTGTGTCTTTGTTTTATTATTCATGAACCAGAAGAG
GATGAGCCTGGCTGTCGACTCCACGACAAAATTAAACATTCGTTGGTCTG
CGAGAAAGTCAGGTTTATGCAACACTTCGTATGTCTTTTCATGGTTTTGG
CTAGTCAGACTACACGAGTACTTCGGTGGGGTATTGGTACGGTGATGATT
ACGTAGGGTAAAATGTAACACAACACAAAGAAGCATTTTAGGATGCATGC
ACCCATTTTGTGTCGGCAAGTGCTACAGGTACAGGGAGGGCTCATGTTCC
GAGTGGGGTTGGCGTGAGGGTCTGAGGTGCTGAACAGGAACCACGTGTGA
AGGGTGCACGCCGATTGCGTATGAGTTGGGATTGGCGGAAGGGTTGGGAC
GAACGTCGGAAATGGGGGCGCCGTGAGGCTGCACTCAATTCGTGAGGAAA
ACTGGCGCATATTTTACGATCCTTGGCAAAGGGGGAAGCAGAAGGTTGTA
CTCGTTTCGGGAATACACTGATTTTGGTTGGGGAGGAGGACTGGGCGTAC
GCTTGTGGACTCTTTGTAAATACATGCGATGTGCAGGTGGAAGTGCTTTG
AAGCAGGAGATAAAAAATAACACATTTGTACATAAAACAACGAGCTTACT
TGTATGTATGGAGCTTTTTCTCCCCTGTTTTTGAGAGCATTAAAACGGAG
GGGGCATCCTTGCTTAGGCGACGGCATGCCTTGAATTGCCGAAGGCCAAA
CAAAGTGGCGTAGTGCCGTGTTCTGGGGAAAACGCTGCCGCTACACCGTC
GTCGTCGCCAAGCGCGCCATGTAACTTTCCTGTGGCTACCTTCGCCTCGT
GGGTGTGCAGGCGTGCGACGCATCTCTCTCACCCTCATCACCAGAGAGAG
CGATCGATGCCTGCCGTCATCAGAAAATGTCAAGCCTCTGTGTGGCCGTC
GCGCCATGTTTCGCAGGCGAGGCGGCTCTGAGACGCGGAATCTTCGCGAC
GACCCAACCGCGTTCCACCATCTATGCAGCTCGTTTCTTCTTATTTTTGG
TGCACAGCCAAGGGTCGCAACAACAGCCGGGGCTACCAGTAACAGCGCAC
AAAACACGGTGAAGAGCTTGAAGGGCCCGAGCCAACGGCTGCATTTTGAG
GGTTTAGTCGTCAGACACTTCTACCCGGAATCAATGGGAACTACTTTAAT
TTAGCTGACCTTGCACACGTGGTACCAACGGACATACGCCGTCTAGTGTG
TGAGCCTGTCTGCCTGTTTTCTAGACACCCTCTCGTCCAAGAGAGGTAGG
GCGTGTGTTGTCATAGTCTTACCAGTTTTTTCCTGGTGTCACGAATACTG
GCGTGTGCTGTGACTTGTCAACTGCTTTCGACGGCAGCGACTACTCTGCG
ACTGAGCGTCTTACCTGGGC
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protein sequence of EsuBft414_13a-0001

>EsuBft414_13 ID=EsuBft414_13|Name=EsuBft414_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=144bp
MSFFTKGLAGIFNNGKARKKDEGKGCDKKKDKKDEGSWEELTDAYGRTYW
QHSKTGEWHFGYGGGFVPPVGTVNPSPMGYPGGPVFTPSPVHGGTLFPVA
VAPAKKKEKKEKGKGWWETMYDEDGDKYWEHTVTKKTTYKDPYY
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mRNA from alignment at Scaffold_523:1536942..1542671+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft414_13a-0001 ID=EsuBft414_13a-0001|Name=EsuBft414_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5730bp|location=Sequence derived from alignment at Scaffold_523:1536942..1542671+ (Ectocarpus subulatus male Bft15b)
CGCCCACACCTTCACACAACTCACATCGGCAAGACGCAACGCCACCATCC GCAGCAGAGCAAAGCCTCGCAAAACTCCGCAAGCAGTGCACGTCGCACGT ACTCAGTACACTTCACCACCCCAGCCTTCGCAGCGCATCAGCAGCAGCAC TCATTAACGGGTGACACAGCATGTCGTTCTTCACGAAAGGACTCGCGGGC ATCTTCAACAACGGAAAGGCTCGCAAGAAAGGTGACTTTGAAGTGCGTCG ACGATTGCTGTGCATATCTCTGGCGTTGCTGCTGCCTCTCACTGCTGCTG CTTCAGGTTCATTCGCGAGGTTGAAGCCTCTTGCTGCTGATGGTTGGCTG CATGTATACTACAGCTGTAGTTCGTTGCAGCTCCACACGGCCGTTTCCTC AAAATTCCAAACTTCGTTGACCCGCGTTGTGGCCGCTCCTGACTCCGTCC TCCGTCGCTCTCCCTCCACCCCCTGCGCGTTCTCACACACAGACGAAGGA AAGGGCTGTGACAAGAAGAAGGACAAGAAGGACGAAGGGAGCTGGGAGGA GCTCACGGACGCCTACGGCCGCACGTACTGGTGAGAGACCCGACGAGACA CAGCAGCGATGCGAAAGTGGCGGTTTGCCTTTGGTCTCCTCACTTGGCAG AAGCATTTCTAGCCTCGGAATTCCGAGCCTTGTTCGACCACTGCATGCTG CTGCTGTGCTAGACTAGAGCAGTACTGCTACTGCTGTATATAGAGCTGCC TCAACGGGATGACGAGTACTTCGAAGTACACGTAGATATTCTTGCTGGCC TTAACAACATATTCGCCTGATTGAGAGCGTAGCATCTGATTGAGAGCGAG ATTGCGCGATACGCTGTAGCCGGACTACCACTGAGAGGTGGAGCTTGCTG TGTAGCTTGAATTGAAGGGCTAGCCCGTAGCTTCAAGCCGCTACCCTGGT CATCCTGTGGGAGTCTCTCGTTGTGGAGCTACAGCGGGGAGCAGAAGCTA CAGCAGAGCCCACCGCCCGACGCGATACCGCCCTGAAACAGTTTGAGCAG AAATAGCCAATCTGGGCAAATCTAGCAACTTGTCTAGCTCCTCGCTGCAG CATCCGATGACGATGACACGCATATGCTCGCGAAGCTGCTGATGAGACCT TCAATTTGCACCGCTTCTTGGAATAGCCCGTCCCCTACTTGCCAAGAAAT GGCAAGAGGCGTCTGGACCCGAAATTTCAATTTTTTTGGCTCTCGCTCTC AATCAGATACTTCGCTCTCAATCAGGCGAATATGTTGTTCCTTCCGTTCC AACAAAAGGCCACCAGTTGGAAGGTTGCAAGTACTCTACTTCCACAGAAT CTGCCCGCGACTTTGCCAGTTCAACAACGACAAGGTTCGCGGGAGAATCC CGCGTTCAATATACTTGCGTTTTCTGCGCCGGAGCACGGCCCAACGTCCA ACTCTATTCGTACCGGTTCAATGCGGGCACGTCAACAACATATGCTAACG ATTCACGTGCGTTTATCCCTGGATAACGACCGAGGTTAGACAAATGATCT ACAGGTCTGGAACAACAAGTTCGTTGGGCGTTTCGCCTTTGGCTTGCCCC ACACAACGATGCGATAGGCCTTCCTGCCCAATCCGACACACTGATTTTGA TTGTTTTTCAGTCTTCAACCAGTTTTTTGCCATGCTGCTCGCGAAGTTCA GCTTGTAGGGCATGTGCAAGCTGAAGCCGGCTACTCGATGTGGAGTATTT GACCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNCTAGATCATGTTGTGCGGGGTGGAGAACTCTCGCTC CGCGCAAGGGGGATGATGGAACCACGTTGTGTTAAAATGGTCAAGCACCC TCGAGGCAGTTACACAGAGCTTANNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNCCCCCGCCTTGTCCTCCCGTTTGTCCTCCACCC TGTTTCCGTCACATTCCTTAAACCAACAGGCAGCACAGCAAGACAGGCGA GTGGCACTTCGGCTACGGTGGCGGCTTTGTCCCTCCCGTTGGGACGGTCA ACCCGTCCCCCATGGGCTACCCCGGCGGCCCGGTCTTCACGCCGTCGCCA GTGCACGGCGGCACACTCTTCCCTGTCGCTGTCGCCCCCGCTAAGAAGAA GGAGAAGAAGGAGAAGGGCAAGGGGTGGTGGGAGACGATGTACGACGAAG ACGGAGACAAGTACTGGGAGCACACGGTGACAAAGAAGACCACCTACAAG GACCCTTACTACTGAACACGAAGAGCACGAGCAGAAAAGAACGAACAAGA GGTTTGGTTGTATATAAGCGTGCAGGCTGTCCATGGCGGAGTGGAATGGA TGGCGTGTTCGGGTAATGAGTAAGTGTAGAGTTTCTTCCCGAGGGTGCCC TGGATAAATCCCGAAAGCTCCAGACTATGGCAGGATGGTTCGGGATAACT AAAAATATGTCGTCTTGGGGAAATATATGTTGCAGAGGCCCACTTGATGG TAGCAAAGGCAGAGCTACTGCTGCAGCTCCTTGTAATCTACGCCCCTTTG CGACCACTCGGCGCCATTCTTTCACGCAAGTCCCCTTGCGTGTGGCATAT GTATGTATGTTGCGTGTCTTTTGTTTTTTTCGTGTATACTGTGACGAAAA CATGGGGAATGAGTTCTACGATGGGTTGCGACGACAGCAGTGCATTTTCA CGCGGCGGGTAACGAGTGGGGGGGTTGAGTTGGTGTGGGGGTTGCGAGTG GCTGGTTGAGTTAGAGTTTGTGCTTTGTTCGGATCGTCCTTGTTCTTTGT TTTCGACTAAGATTCCAGTTGTAGTTGTGTCTTTGTTTTATTATTCATGA ACCAGAAGAGGATGAGCCTGGCTGTCGACTCCACGACAAAATTAAACATT CGTTGGTCTGCGAGAAAGTCAGGTTTATGCAACACTTCGTATGTCTTTTC ATGGTTTTGGCTAGTCAGACTACACGAGTACTTCGGTGGGGTATTGGTAC GGTGATGATTACGTAGGGTAAAATGTAACACAACACAAAGAAGCATTTTA GGATGCATGCACCCATTTTGTGTCGGCAAGTGCTACAGGTACAGGGAGGG CTCATGTTCCGAGTGGGGTTGGCGTGAGGGTCTGAGGTGCTGAACAGGAA CCACGTGTGAAGGGTGCACGCCGATTGCGTATGAGTTGGGATTGGCGGAA GGGTTGGGACGAACGTCGGAAATGGGGGCGCCGTGAGGCTGCACTCAATT CGTGAGGAAAACTGGCGCATATTTTACGATCCTTGGCAAAGGGGGAAGCA GAAGGTTGTACTCGTTTCGGGAATACACTGATTTTGGTTGGGGAGGAGGA CTGGGCGTACGCTTGTGGACTCTTTGTAAATACATGCGATGTGCAGGTGG AAGTGCTTTGAAGCAGGAGATAAAAAATAACACATTTGTACATAAAACAA CGAGCTTACTTGTATGTATGGAGCTTTTTCTCCCCTGTTTTTGAGAGCAT TAAAACGGAGGGGGCATCCTTGCTTAGGCGACGGCATGCCTTGAATTGCC GAAGGCCAAACAAAGTGGCGTAGTGCCGTGTTCTGGGGAAAACGCTGCCG CTACACCGTCGTCGTCGCCAAGCGCGCCATGTAACTTTCCTGTGGCTACC TTCGCCTCGTGGGTGTGCAGGCGTGCGACGCATCTCTCTCACCCTCATCA CCAGAGAGAGCGATCGATGCCTGCCGTCATCAGAAAATGTCAAGCCTCTG TGTGGCCGTCGCGCCATGTTTCGCAGGCGAGGCGGCTCTGAGACGCGGAA TCTTCGCGACGACCCAACCGCGTTCCACCATCTATGCAGCTCGTTTCTTC TTATTTTTGGTGCACAGCCAAGGGTCGCAACAACAGCCGGGGCTACCAGT AACAGCGCACAAAACACGGTGAAGAGCTTGAAGGGCCCGAGCCAACGGCT GCATTTTGAGGGTTTAGTCGTCAGACACTTCTACCCGGAATCAATGGGAA CTACTTTAATTTAGCTGACCTTGCACACGTGGTACCAACGGACATACGCC GTCTAGTGTGTGAGCCTGTCTGCCTGTTTTCTAGACACCCTCTCGTCCAA GAGAGGTAGGGCGTGTGTTGTCATAGTCTTACCAGTTTTTTCCTGGTGTC ACGAATACTGGCGTGTGCTGTGACTTGTCAACTGCTTTCGACGGCAGCGA CTACTCTGCGACTGAGCGTCTTACCTGGGC
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Coding sequence (CDS) from alignment at Scaffold_523:1536942..1542671+

>EsuBft414_13a-0001 ID=EsuBft414_13a-0001|Name=EsuBft414_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=435bp|location=Sequence derived from alignment at Scaffold_523:1536942..1542671+ (Ectocarpus subulatus male Bft15b)
ATGTCGTTCTTCACGAAAGGACTCGCGGGCATCTTCAACAACGGAAAGGC
TCGCAAGAAAGACGAAGGAAAGGGCTGTGACAAGAAGAAGGACAAGAAGG
ACGAAGGGAGCTGGGAGGAGCTCACGGACGCCTACGGCCGCACGTACTGG
CAGCACAGCAAGACAGGCGAGTGGCACTTCGGCTACGGTGGCGGCTTTGT
CCCTCCCGTTGGGACGGTCAACCCGTCCCCCATGGGCTACCCCGGCGGCC
CGGTCTTCACGCCGTCGCCAGTGCACGGCGGCACACTCTTCCCTGTCGCT
GTCGCCCCCGCTAAGAAGAAGGAGAAGAAGGAGAAGGGCAAGGGGTGGTG
GGAGACGATGTACGACGAAGACGGAGACAAGTACTGGGAGCACACGGTGA
CAAAGAAGACCACCTACAAGGACCCTTACTACTGA
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