EsuBft413_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft413_7a-0001
Unique Name	EsuBft413_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_49	contig	Scaffold_49:57013..59378 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft413_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	198
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft413_7a	EsuBft413_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_49 57013..59378 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_7a-0001-exon	agat-exon-23103	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 57013..57038 +
EsuBft413_7a-0001-exon	agat-exon-23102	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 57244..57426 +
EsuBft413_7a-0001-exon	EsuBft413_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 57603..59378 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_7a-0001-cds	EsuBft413_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_49 57013..57038 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_7a-0001-exon	agat-three_prime_utr-15298	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_49 58108..59378 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_7a-0001	EsuBft413_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_49 57013..58107 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_49:57013..59378+
coding sequence from alignment at Scaffold_49:57013..59378+

spliced messenger RNA

>EsuBft413_7a-0001 ID=EsuBft413_7a-0001|Name=EsuBft413_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1985bp|location=Sequence derived from alignment at Scaffold_49:57013..59378+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTCTCTTTTAGTCAGCCAAAGGGAGCGCCTGGAAGATGTCGCGCT
CCACCGACGAGGCCCTGGAGGTGGCGCCGGAGCCGGGTGCCTCGCGGTCC
CGGAGGCGCCGCTGACGACGCCCCTTGAAGGCTTCCAGCTCGCACCGGTG
GCGGGCTCCTTCCTCTTTGACGGCGGCGGCGGCCGTCGTCAGCGAAGCAT
GATTCGCCTGTGGCCGCCTCAACCTCCGAAGAGGACAACAGCGCCTGCAC
TTCCCGCCAGAACCGGATCGCTTCGGGCGGCGGATGCCGCGGCTATCGTG
ATGCCGCCCAAAAGCACGGTGGATGATGCCGTCCAAGCAGCCCGTGTCCG
CCGGAGCCCACTTTTGGAACAGGTGGAGTACCTCCTGGGGTCGCGTCGAG
CGACGCACGAGCATGCCACGGACAAGGTGGTGTGGCCAGGATGTCACCGC
CCTGCCCCTCCTCCGGTCCCGTCTTTCGCCGATTTCACGACGACATCCAA
GAAGGTCTCCGTCAAGAGCGGCGGCCGCGGAAGCGGAGGCTCTGGCGAGA
GCGACAGCGACAGCAGCCACCACTGCGGATCTGCTTCTCCCTATCGTGGT
CGCACCCAGTCATCTTCTTCGGCATCCAGCTCTTCGGAGCGCGCGGACAA
GAAAGGAGCGGACAAGAAAAGCTTCACCTCCCCGTCTTCGGCCACAGCTG
GAGGAGCATCCTAGGACTCTGGCTCCGAGCGTAGCCTTCCTCGGAAAGCT
TCTTCGGGCCGGTAATTCGGGCAAGTGGTACCGCCTCTCGTGGACGTTGT
TTCTGATGATCGTCACAACGTTCTTCTGCGTGATGATCATGTTGTATTTT
CGAATACTGTGTGGCGTAACAAGTCTATTGAGTTGACAGACTCCCGTGGT
GCTGATGTTGCAGACACGAAACCGTGTATTACGACCGAACCCAGTGGTGT
TGCTGTTGAAGCTGCCCCACCGTCTGAAAAATCAGAGCCTCTTGCCATAG
CGAGTACGCCCACAGATGATCGTGTCTTACTGCTTTCGTCCACCACTGCT
CATGCTCGCCATGAAACTGTTGCCGCTGCTGCTTCGGCAGCTGATGTCGC
AAATGTTGCTCGTGTCTAACGTGAGTACGTCACCCTCAACCTAAAAAAAG
TTGAGCGTTTTGCTACTTTGCCTTTCCTTGCTACTATGCCGCCAGCTGAC
GCGTACCAGCAGCTCATTCGCGCGGTTCGATCTGCACCTTGAGATATCCT
ATTATTATGTGATGATCGTAGCGCAGATTTGACGGACAACAGTTTTGTCC
GCGGTTGGGAACGCCCTCTCAAAAAGCGAATTTTGAGTGCGATCACACCT
GACAAACCTAAGTTCATCCGACCTTGTCCTCTCTATTTCTGATTACTTTC
AGCAAAAATAATCCGAGGATGGTGAAGGAGCCACGGGCCCGGAGGCCTTC
ACGCTCCTTCTGCGGCTGTTGTCGGAGCAATTCGATGTCGGCGATCGGCA
GGAGTCGTTCTTGCGACTTCTGCAGTTTGGTGTCTCGAATGGCACCTTGT
TTGCGAACTACCTTCGAGCGTTCCGTCTTTTGGTTTCTTCAGTGACTGGG
TCTGAGCGTGTCTTGGCTCCTAGCGTGTCTATGGTGCTTGAGATAGTTAG
AAATTCTGGAAGTAAATCGTTTTCACCTTTGGCTCCGATGCTGTACCCTG
GTGACCTGGCTACGGCCGTGACACCGTTTGACTCGATGGATGCAATGTGG
CCGGCGTTTGCGCCTTTGGCCACCAACAAAACCCCCGCTATAGGAGGTTC
AGAGTATTTTTCTTTGTCTCCTACGCCTGGCTCTTCGCAGCCCCGGCGTT
CCCGCAACCGTGCAACTGCACCTGCGCCTTCGGGCCAGTGGGCACAAGGT
TCTGCACAAAATCCTTTTGTTTTGGCAGCTCAGTCTCAGGGTGGCGGTGA
TGATCCGTTTTCCCGTGACTACAATGCATGGCCCG

protein sequence of EsuBft413_7a-0001

>EsuBft413_7 ID=EsuBft413_7|Name=EsuBft413_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=237bp
MWSLLVSQRERLEDVALHRRGPGGGAGAGCLAVPEAPLTTPLEGFQLAPV
AGSFLFDGGGGRRQRSMIRLWPPQPPKRTTAPALPARTGSLRAADAAAIV
MPPKSTVDDAVQAARVRRSPLLEQVEYLLGSRRATHEHATDKVVWPGCHR
PAPPPVPSFADFTTTSKKVSVKSGGRGSGGSGESDSDSSHHCGSASPYRG
RTQSSSSASSSSERADKKGADKKSFTSPSSATAGGAS

mRNA from alignment at Scaffold_49:57013..59378+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft413_7a-0001 ID=EsuBft413_7a-0001|Name=EsuBft413_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2366bp|location=Sequence derived from alignment at Scaffold_49:57013..59378+ (Ectocarpus subulatus male Bft15b)
ATGTGGTCTCTTTTAGTCAGCCAAAGGTGAACTCCTGATCAGCAACAACA
CCTACTGTATCAGTCCAAAAAAGCGCCATGTCTGCGAGTTGACCCTTCGC
AAAGGCTGAGTCGCCTTTGCGAAAAGCAACGGAACGTTCGCTGCCCCGTG
TGGTGGGGCTACGGACAGCGGTAGCGCACGACACCCCACGACGAGCCGTG
GGAGACGAGGTCGCCGGCGGCGCTCGCCCAGGGAGCGCCTGGAAGATGTC
GCGCTCCACCGACGAGGCCCTGGAGGTGGCGCCGGAGCCGGGTGCCTCGC
GGTCCCGGAGGCGCCGCTGACGACGCCCCTTGAAGGCTTCCAGCTCGCAC
CGGTGGCGGGCTCCTTCCTCTTTGACGGCGGCGGCGGCCGTCGTCAGCGA
AGCATGATTCGCCTGTAAAGCAGCTATGGCCACCTCGGTGTCGTGAAGGT
CGGTGGCGACCTTAAAAGTGACGCCTTCCGTGGAGACCAGGGCGTTCTTG
ATACCGATTTCCTCTTCACGATCAGCTTCATCCTCCAGCTGTTGTGCCCA
GGCCAAGCGATCGGCCCGGACACGATCCACCGCAGCGCAGGTGGCCGCCT
CAACCTCCGAAGAGGACAACAGCGCCTGCACTTCCCGCCAGAACCGGATC
GCTTCGGGCGGCGGATGCCGCGGCTATCGTGATGCCGCCCAAAAGCACGG
TGGATGATGCCGTCCAAGCAGCCCGTGTCCGCCGGAGCCCACTTTTGGAA
CAGGTGGAGTACCTCCTGGGGTCGCGTCGAGCGACGCACGAGCATGCCAC
GGACAAGGTGGTGTGGCCAGGATGTCACCGCCCTGCCCCTCCTCCGGTCC
CGTCTTTCGCCGATTTCACGACGACATCCAAGAAGGTCTCCGTCAAGAGC
GGCGGCCGCGGAAGCGGAGGCTCTGGCGAGAGCGACAGCGACAGCAGCCA
CCACTGCGGATCTGCTTCTCCCTATCGTGGTCGCACCCAGTCATCTTCTT
CGGCATCCAGCTCTTCGGAGCGCGCGGACAAGAAAGGAGCGGACAAGAAA
AGCTTCACCTCCCCGTCTTCGGCCACAGCTGGAGGAGCATCCTAGGACTC
TGGCTCCGAGCGTAGCCTTCCTCGGAAAGCTTCTTCGGGCCGGTAATTCG
GGCAAGTGGTACCGCCTCTCGTGGACGTTGTTTCTGATGATCGTCACAAC
GTTCTTCTGCGTGATGATCATGTTGTATTTTCGAATACTGTGTGGCGTAA
CAAGTCTATTGAGTTGACAGACTCCCGTGGTGCTGATGTTGCAGACACGA
AACCGTGTATTACGACCGAACCCAGTGGTGTTGCTGTTGAAGCTGCCCCA
CCGTCTGAAAAATCAGAGCCTCTTGCCATAGCGAGTACGCCCACAGATGA
TCGTGTCTTACTGCTTTCGTCCACCACTGCTCATGCTCGCCATGAAACTG
TTGCCGCTGCTGCTTCGGCAGCTGATGTCGCAAATGTTGCTCGTGTCTAA
CGTGAGTACGTCACCCTCAACCTAAAAAAAGTTGAGCGTTTTGCTACTTT
GCCTTTCCTTGCTACTATGCCGCCAGCTGACGCGTACCAGCAGCTCATTC
GCGCGGTTCGATCTGCACCTTGAGATATCCTATTATTATGTGATGATCGT
AGCGCAGATTTGACGGACAACAGTTTTGTCCGCGGTTGGGAACGCCCTCT
CAAAAAGCGAATTTTGAGTGCGATCACACCTGACAAACCTAAGTTCATCC
GACCTTGTCCTCTCTATTTCTGATTACTTTCAGCAAAAATAATCCGAGGA
TGGTGAAGGAGCCACGGGCCCGGAGGCCTTCACGCTCCTTCTGCGGCTGT
TGTCGGAGCAATTCGATGTCGGCGATCGGCAGGAGTCGTTCTTGCGACTT
CTGCAGTTTGGTGTCTCGAATGGCACCTTGTTTGCGAACTACCTTCGAGC
GTTCCGTCTTTTGGTTTCTTCAGTGACTGGGTCTGAGCGTGTCTTGGCTC
CTAGCGTGTCTATGGTGCTTGAGATAGTTAGAAATTCTGGAAGTAAATCG
TTTTCACCTTTGGCTCCGATGCTGTACCCTGGTGACCTGGCTACGGCCGT
GACACCGTTTGACTCGATGGATGCAATGTGGCCGGCGTTTGCGCCTTTGG
CCACCAACAAAACCCCCGCTATAGGAGGTTCAGAGTATTTTTCTTTGTCT
CCTACGCCTGGCTCTTCGCAGCCCCGGCGTTCCCGCAACCGTGCAACTGC
ACCTGCGCCTTCGGGCCAGTGGGCACAAGGTTCTGCACAAAATCCTTTTG
TTTTGGCAGCTCAGTCTCAGGGTGGCGGTGATGATCCGTTTTCCCGTGAC
TACAATGCATGGCCCG

Coding sequence (CDS) from alignment at Scaffold_49:57013..59378+

>EsuBft413_7a-0001 ID=EsuBft413_7a-0001|Name=EsuBft413_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=714bp|location=Sequence derived from alignment at Scaffold_49:57013..59378+ (Ectocarpus subulatus male Bft15b)
ATGTGGTCTCTTTTAGTCAGCCAAAGGGAGCGCCTGGAAGATGTCGCGCT
CCACCGACGAGGCCCTGGAGGTGGCGCCGGAGCCGGGTGCCTCGCGGTCC
CGGAGGCGCCGCTGACGACGCCCCTTGAAGGCTTCCAGCTCGCACCGGTG
GCGGGCTCCTTCCTCTTTGACGGCGGCGGCGGCCGTCGTCAGCGAAGCAT
GATTCGCCTGTGGCCGCCTCAACCTCCGAAGAGGACAACAGCGCCTGCAC
TTCCCGCCAGAACCGGATCGCTTCGGGCGGCGGATGCCGCGGCTATCGTG
ATGCCGCCCAAAAGCACGGTGGATGATGCCGTCCAAGCAGCCCGTGTCCG
CCGGAGCCCACTTTTGGAACAGGTGGAGTACCTCCTGGGGTCGCGTCGAG
CGACGCACGAGCATGCCACGGACAAGGTGGTGTGGCCAGGATGTCACCGC
CCTGCCCCTCCTCCGGTCCCGTCTTTCGCCGATTTCACGACGACATCCAA
GAAGGTCTCCGTCAAGAGCGGCGGCCGCGGAAGCGGAGGCTCTGGCGAGA
GCGACAGCGACAGCAGCCACCACTGCGGATCTGCTTCTCCCTATCGTGGT
CGCACCCAGTCATCTTCTTCGGCATCCAGCTCTTCGGAGCGCGCGGACAA
GAAAGGAGCGGACAAGAAAAGCTTCACCTCCCCGTCTTCGGCCACAGCTG
GAGGAGCATCCTAG