EsuBft413_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft413_4a-0001
Unique Name	EsuBft413_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_49	contig	Scaffold_49:24907..26789 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	159749.K0SBY6
ProteomeId	EsuBft413_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	188
Hectar predicted targeting category	other localisation
Evalue	0.000424
EggNOG OGs	2E2RF@1\|root,2S9YA@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15
Description	Plant transposon protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft413_4a	EsuBft413_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_49 24907..26789 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_4a-0001-exon	EsuBft413_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 24907..26789 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_4a-0001-exon	agat-three_prime_utr-15294	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_49 24907..26096 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_4a-0001-cds	EsuBft413_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_49 26097..26504 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_4a-0001-exon	agat-five_prime_utr-9744	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_49 26505..26789 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_4a-0001	EsuBft413_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_49 26097..26504 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_49:24907..26789-
coding sequence from alignment at Scaffold_49:24907..26789-

spliced messenger RNA

>EsuBft413_4a-0001 ID=EsuBft413_4a-0001|Name=EsuBft413_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1883bp|location=Sequence derived from alignment at Scaffold_49:24907..26789- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCGGCGGGTTTAGGGTCGAAAAAATTCGTTTGGGACATCCGGGCCGAGT
CTCCAACGATAGTTGGGCATATATTTCGTATGGGAATCGGGCCCGGATGT
TGCCGACGGATTGTTCGTTTTGATCCAACAAACCGAAATCGCGGGGTCAC
ACCGCATCCATCCCGAGCGGCACCCGAGCGTGGCGTGTGTGTGCACGAGC
TTTCCAGTACCCAGCACAGACTGGACCGGGTGCGCAATGGAGCACGCGAG
TGCGGCCGACGACAGCGGCAGCGACGACGAACGACATGCCCACCTACTTG
TTCTTCTTGCAGCAGCGAAGCGGAGACGTCGCGAGCGGCAACGCGCTGTG
CTTACGGGTGTCGACCTGGCGAGTTGTCCTGCGGTCCTTCCCAGATGGCG
ACGAGTTGGAGGACGAAGGCCTTGGCGGTGGCTCCCCCGTGAAGCGTACC
CGCCGAGTTCTTCCACGGCCAGACTACCGCGCCTCGTTTTGGTGGCGCAT
GCTGGGCGAGACGGGCCTCAAGGAACCAGTGTCAAGAGAGGCCAAGCTTT
TTCGGAGGCGCTTCCGCATCCCATACCAGTTCTTCACCGAGCTCATGGAG
CTGGTCAAGAAGAAGAAGTGGTTCCCCATGCGCAAGAAAGATGTGGCCGG
GCGTATGTGCATCCCAGTCGAGCTGAAGGTGATGTATTTTTGAGACGTGC
CGATTCCAACACTGGCATTCATGCATTCATCTAGAATATTTAATGCATCT
TTGTGTGCACACTGAGAACAAGGACAATGTATAGTCTACGCACGCACGCA
CGTAGTATGCGAAAAACAGAGTAGCGCGACTGGGTGTCGGAGGAGAGCAA
GGGCAACGTAAGTATGGTCTACACATAGTGCAAAGTCGTACCATAGACCG
CAGGGCTTGTGCAAAAGATGAGAAAAACGTGGTGTACACCTTCAGAAGCT
GCTGCAGGTAGATTGTGGTAAATTATTCTCGCCAAACCCCCCTTGTTCCA
TTTTCTACGTCTTGCGCCAGAGCCAATGCTGCAGGAAGATACTGCTGTGT
TGCTCATGCCCCTTCCGGTTTGCCATGTTCTCGAAGTAGTCGAAAATGCA
GCGCCGCGAATAACCTGACAACCGAACGATCAATTCCCGCCGACCGTACA
CCGCGCACGACGTCCATGCGCACAGGTCTAGTCATCCCTGCACATCTTGG
GTAGGGGAAACTTCTTCGAGGACATGAGCCAGGCTTCACACAGGAGTGAG
GGCGTTTACAGGCCNCCTGACAACCGAACGATCAATTCCCGCCGACCGTA
CACCGCGCACGACGTCCATGCGCACAGGTCTAGTCATCCCTGCACATCTT
GGGTAGGGGAAACTTCTTCGAGGACATGAGCCAGGCTTCACACATGAGTG
AGGGCGTTATACAGGCTAGCTTCCACAAGTTCACGAAGCTGTTCGCCCAG
GAGTTTTATCACGACCACGTGTGTATGCCCACTGGCGAGGACCAGGACAA
GGTGACCTACACTTCATGAAATGTCTGCCGCACTTTTTTTCTTCGTGCGA
CCACACTTGCTTTCCGCTGTATCCGTTGAAGACCATTCCGCCTGTATTTC
CTTGCGCGACCGGCCCGGTGGTCTAGTGGTATCCTCGTAAACCGCTAGTC
GCAGACATCGTGCTAGACGCGGAGATCTTGACTTCGAATCCCGATGGGGA
GAAAAAAAATTAGTTTGCGGGTGAAAGGGTTATACAAAAGCTCTCGTGAG
TGCCAACTTCGACGTTAGTACAGTTGACGAGAAAAGGGACGGCTGGTCCT
TCTCGCGATAGAAATAAAATTCAGCACGCAACGCGGGAGGAAGGTCGGGC
ATCTTGACAAAATACATGGAAGAAATAAGCCCT

protein sequence of EsuBft413_4a-0001

>EsuBft413_4 ID=EsuBft413_4|Name=EsuBft413_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=135bp
MPTYLFFLQQRSGDVASGNALCLRVSTWRVVLRSFPDGDELEDEGLGGGS
PVKRTRRVLPRPDYRASFWWRMLGETGLKEPVSREAKLFRRRFRIPYQFF
TELMELVKKKKWFPMRKKDVAGRMCIPVELKVMYF

mRNA from alignment at Scaffold_49:24907..26789-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft413_4a-0001 ID=EsuBft413_4a-0001|Name=EsuBft413_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1883bp|location=Sequence derived from alignment at Scaffold_49:24907..26789- (Ectocarpus subulatus male Bft15b)
TGCGGCGGGTTTAGGGTCGAAAAAATTCGTTTGGGACATCCGGGCCGAGT
CTCCAACGATAGTTGGGCATATATTTCGTATGGGAATCGGGCCCGGATGT
TGCCGACGGATTGTTCGTTTTGATCCAACAAACCGAAATCGCGGGGTCAC
ACCGCATCCATCCCGAGCGGCACCCGAGCGTGGCGTGTGTGTGCACGAGC
TTTCCAGTACCCAGCACAGACTGGACCGGGTGCGCAATGGAGCACGCGAG
TGCGGCCGACGACAGCGGCAGCGACGACGAACGACATGCCCACCTACTTG
TTCTTCTTGCAGCAGCGAAGCGGAGACGTCGCGAGCGGCAACGCGCTGTG
CTTACGGGTGTCGACCTGGCGAGTTGTCCTGCGGTCCTTCCCAGATGGCG
ACGAGTTGGAGGACGAAGGCCTTGGCGGTGGCTCCCCCGTGAAGCGTACC
CGCCGAGTTCTTCCACGGCCAGACTACCGCGCCTCGTTTTGGTGGCGCAT
GCTGGGCGAGACGGGCCTCAAGGAACCAGTGTCAAGAGAGGCCAAGCTTT
TTCGGAGGCGCTTCCGCATCCCATACCAGTTCTTCACCGAGCTCATGGAG
CTGGTCAAGAAGAAGAAGTGGTTCCCCATGCGCAAGAAAGATGTGGCCGG
GCGTATGTGCATCCCAGTCGAGCTGAAGGTGATGTATTTTTGAGACGTGC
CGATTCCAACACTGGCATTCATGCATTCATCTAGAATATTTAATGCATCT
TTGTGTGCACACTGAGAACAAGGACAATGTATAGTCTACGCACGCACGCA
CGTAGTATGCGAAAAACAGAGTAGCGCGACTGGGTGTCGGAGGAGAGCAA
GGGCAACGTAAGTATGGTCTACACATAGTGCAAAGTCGTACCATAGACCG
CAGGGCTTGTGCAAAAGATGAGAAAAACGTGGTGTACACCTTCAGAAGCT
GCTGCAGGTAGATTGTGGTAAATTATTCTCGCCAAACCCCCCTTGTTCCA
TTTTCTACGTCTTGCGCCAGAGCCAATGCTGCAGGAAGATACTGCTGTGT
TGCTCATGCCCCTTCCGGTTTGCCATGTTCTCGAAGTAGTCGAAAATGCA
GCGCCGCGAATAACCTGACAACCGAACGATCAATTCCCGCCGACCGTACA
CCGCGCACGACGTCCATGCGCACAGGTCTAGTCATCCCTGCACATCTTGG
GTAGGGGAAACTTCTTCGAGGACATGAGCCAGGCTTCACACAGGAGTGAG
GGCGTTTACAGGCCNCCTGACAACCGAACGATCAATTCCCGCCGACCGTA
CACCGCGCACGACGTCCATGCGCACAGGTCTAGTCATCCCTGCACATCTT
GGGTAGGGGAAACTTCTTCGAGGACATGAGCCAGGCTTCACACATGAGTG
AGGGCGTTATACAGGCTAGCTTCCACAAGTTCACGAAGCTGTTCGCCCAG
GAGTTTTATCACGACCACGTGTGTATGCCCACTGGCGAGGACCAGGACAA
GGTGACCTACACTTCATGAAATGTCTGCCGCACTTTTTTTCTTCGTGCGA
CCACACTTGCTTTCCGCTGTATCCGTTGAAGACCATTCCGCCTGTATTTC
CTTGCGCGACCGGCCCGGTGGTCTAGTGGTATCCTCGTAAACCGCTAGTC
GCAGACATCGTGCTAGACGCGGAGATCTTGACTTCGAATCCCGATGGGGA
GAAAAAAAATTAGTTTGCGGGTGAAAGGGTTATACAAAAGCTCTCGTGAG
TGCCAACTTCGACGTTAGTACAGTTGACGAGAAAAGGGACGGCTGGTCCT
TCTCGCGATAGAAATAAAATTCAGCACGCAACGCGGGAGGAAGGTCGGGC
ATCTTGACAAAATACATGGAAGAAATAAGCCCT

Coding sequence (CDS) from alignment at Scaffold_49:24907..26789-

>EsuBft413_4a-0001 ID=EsuBft413_4a-0001|Name=EsuBft413_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=408bp|location=Sequence derived from alignment at Scaffold_49:24907..26789- (Ectocarpus subulatus male Bft15b)
ATGCCCACCTACTTGTTCTTCTTGCAGCAGCGAAGCGGAGACGTCGCGAG
CGGCAACGCGCTGTGCTTACGGGTGTCGACCTGGCGAGTTGTCCTGCGGT
CCTTCCCAGATGGCGACGAGTTGGAGGACGAAGGCCTTGGCGGTGGCTCC
CCCGTGAAGCGTACCCGCCGAGTTCTTCCACGGCCAGACTACCGCGCCTC
GTTTTGGTGGCGCATGCTGGGCGAGACGGGCCTCAAGGAACCAGTGTCAA
GAGAGGCCAAGCTTTTTCGGAGGCGCTTCCGCATCCCATACCAGTTCTTC
ACCGAGCTCATGGAGCTGGTCAAGAAGAAGAAGTGGTTCCCCATGCGCAA
GAAAGATGTGGCCGGGCGTATGTGCATCCCAGTCGAGCTGAAGGTGATGT
ATTTTTGA