EsuBft413_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft413_3a-0001
Unique Name	EsuBft413_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_49	contig	Scaffold_49:17422..21709 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft413_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	288
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft413_3a	EsuBft413_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_49 17422..21709 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_3a-0001	EsuBft413_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_49 17688..19399 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_3a-0001-exon	agat-exon-23088	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 17422..18036 +
EsuBft413_3a-0001-exon	EsuBft413_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 19206..21172 +
EsuBft413_3a-0001-exon	agat-exon-23089	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 21412..21709 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_3a-0001-exon	agat-five_prime_utr-9743	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_49 17422..17687 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_3a-0001-cds	EsuBft413_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_49 17688..18036 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_3a-0001-exon	agat-three_prime_utr-15292	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_49 19400..21172 +
EsuBft413_3a-0001-exon	agat-three_prime_utr-15293	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_49 21412..21709 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_49:17422..21709+
coding sequence from alignment at Scaffold_49:17422..21709+

spliced messenger RNA

>EsuBft413_3a-0001 ID=EsuBft413_3a-0001|Name=EsuBft413_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2880bp|location=Sequence derived from alignment at Scaffold_49:17422..21709+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTTATGGCTCCCGGAAGTTGGCCCGACGGAAAATAAAAATTCGTTGCGA
AATTCCGGGCGGATAATCCGTTGGAAGTGATATTATGGTCCAACGGATTA
TTTTATCTGGTTTTCGAGCTTCCTGCGGTGGCATGTAGCGCCAGGGGGCC
CAGGACATGTCAGGATTCGAGATTGGATGGAGGCCTAGAGCGGCCGAGCG
GCCACCACAGACCACACAACCCACGGTAGAGAGCGAGAGCCAAGTAAGTG
CAGCACGGGCACCACCATGTCAACCGCCTCTCTTATGCTAGAGAAGAATG
CTAGCTCCGACTGGGTGATCAACAGGATGAAGGGCACCAACTGGGGCGAC
AAACCGAACGTAGGCCATGCTAGTCTGTTCCAGTTCTTGCCGGGGTTCTA
CGCTGGCATGAGCGTAAAGGAGAGCGGCAAATGCTACAGCGAGTCTGATA
GAAATGCAGAGGCAGTCAAAGTTTACAAAAGCTTTGCTGTGCCGGCATTC
CTCCGCTGGTTGGTAGAGAAATACGACTTCACCACTACCCCAGCTTGGCT
CACGAAGGACATCATGGGCCGCAACTCGATGGGACCTAAAATCTTGCTGG
AAGCGGCCAATAAAGGCACACAGGGAAAACTTTATGATGAAACCGAGGCG
TCGCTCTGGCGTACAAGATTCGGGGATGTCTTGTTAGCCCTACGGAGCGA
CTGGAACCAGACGAAGACATCAACAACAATTTATGTTGTTTTGCGAAATG
CGTCCATCTATAATTTGTGTGTACGTGTGGGCCATCGCTTCGGCGGTGCA
ATCAAGTAGGGATACAGTCAGCGAGACCTGACTTGTTCGTGGTTTTGGTA
TATTTTGTGAGTTGGGTTGTTTTCCTTGGCATCGCGTGCCGAGCGGAGCC
GATGAGCTCTAGGCTATTTCCTTTTCCGGATTTGTGCCCCAATTTCTCGT
GCAGTATCCCGTTTTCTGTCCATGTTCTTTTTCCTTTGTATTTTGGAGAA
GTTTGTATCGTTTTCTGGGTAGTTGGCCAGTGAGCACGGAAGGCGTGGGC
GCCAGTTGGACCGGTACGGATGTTACAAGGCACTGAGCAAAGTTCTGAAG
TATTTGTTAGTTCAGGCAACATTTCCATATCTATTTGAAGCGGCCGTGGT
AGCGGGGGCGGAGGGGGAGCTAACCGTCCCCCGCAATATCCTTTCAGAAC
GCCCCGGGGAGCGCACGTACTCTCGTTCGTTATCCAGGGCACGGGGCGGA
AGGTTCAAAGGCGTTGTTCTTGTCTATTTTGGGGACCTACAGGCACACCA
AAGTATTGGGCACGCGGACTGCTTGCGCCATGACCCACGATGTTGTGCTG
TCCAGAGGGTTCCGTCTGTTTAGCCTGTATGTTTTTTAAAGTTTAGGTAT
GATCTGGCAGTAACCTAGCTTGGTCGGTAGTCTTTTGGCACCGGCAGGGT
TCAGGTGTTGCGCACCCGCAGACTTTTGCCTGTAGCCAGGAGTCCCGATG
TGTACTTGAGCTGTAGACACGGCCACCCCTTAATCTAGACAAGCATCAGC
TTCGACACCAGTGTCAACCGATCCCTGTTGGTTTTCGAGAAAAAACGCCC
CGGGGCGAACTCGCATATCAGGGATCGATCCCCCCCGACAGAAAACGAAC
TCCAACTTGTCGCGTTTCCCCGCCTCTGCTTCATTTTGACGGGAGCACTA
CGATTGACCAGGGAATCGGTACTGGCTGCACGGCGGGCCAATACTGTGTA
AGTGCCATGTGTCAGGGTTAACAGAAAATCGAATTCTACATTTAGCAACC
TCGCGCGGTCTGCCTGCCATCGACTCGGCGCTCTTGGATCAATACTTGCG
ACAATTGAACATGCCGTCCTGCGGGAGGGAAGTCGTGTACCGCCATAAAA
AAATTGAGAGGGGAGCGAGCGTGGATACCGTTCCCAGTGTCGCCATGATA
TTCACCATCCGTTCCTATCTCTGCTTGGCACCTTACATCATCCGGTCCAA
AACACGCGGATGTCTTCCGTGGTCACAGACCAGCTACCCAGATTTCCGGC
ACACACAATGCACTCGATAGTCAGAAGAGAAAGCCAAAACGGTCCAGGTC
TTGGCATACACCTTTACATATTAATAAAAAACAAGGTCCCAGTCAGACAC
ATCGGGCGGAGGTATAAGTAGGAACATTCTCGTTCGGTAGGCGGTGCCAA
ACCCCTTCACGCAGACAACATTAAAAGTCCACGATTCTGATCTATTCCTC
CTACATTCACCGCTGGGGTTGCCACTGCCATGCCACTTGCGGTGGTTCTA
GTCACCCACTTCACTCAGCCGTCGACCAACAGGCGACTCAGATAGTGTTC
CAAGGTCCGGTTACAGAAAACATAGAGCGTAAAATACCAAACAGGGAGAG
CGGTGAACTGCACCTAGATCACGGCGTACCACATACACAAACAGTGGACG
GGCACAAAACACAACCTCGTACCGGGTACACTGTAAATAAGACGTTGTAA
CCAGCACCTGCACGCTGCCTGCATAACCTACCCGGTCCGGTAAACTGATG
CAAAACCTTATATAAACCATTTCCATTTTGTGTACTTGGATTTCATAGCG
GCATATCATGTAACGGTGCCTTCCATGAAGTGAATCAGTCGAATCCCTGA
GAATGCACTCTAAAACACAGAGGAAGAAAGCCACGATACTAAGGACATGT
AGTACGGCTCCTCCAGCGAACCCCCTCCGAGCGTGAAACAACCAAGCCGG
TTTGGCATACAGTTCTCAGGCTGAACGAAAACACGCGCGTAAAAGAAAAG
AAATTCACGCACACCAAACCAAAAAAAGCGCCACGTGCATATAAGCCAGT
CGTGGTGTGTCTGAGCCACCGAATGTCGTT

protein sequence of EsuBft413_3a-0001

>EsuBft413_3 ID=EsuBft413_3|Name=EsuBft413_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=180bp
MSTASLMLEKNASSDWVINRMKGTNWGDKPNVGHASLFQFLPGFYAGMSV
KESGKCYSESDRNAEAVKVYKSFAVPAFLRWLVEKYDFTTTPAWLTKDIM
GRNSMGPKILLEAANKGTQGKLYDETEASLWRTRFGDVLLALRSDWNQTK
TSTTIYVVLRNASIYNLCVRVGHRFGGAIK

mRNA from alignment at Scaffold_49:17422..21709+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft413_3a-0001 ID=EsuBft413_3a-0001|Name=EsuBft413_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4288bp|location=Sequence derived from alignment at Scaffold_49:17422..21709+ (Ectocarpus subulatus male Bft15b)
TCTTATGGCTCCCGGAAGTTGGCCCGACGGAAAATAAAAATTCGTTGCGA
AATTCCGGGCGGATAATCCGTTGGAAGTGATATTATGGTCCAACGGATTA
TTTTATCTGGTTTTCGAGCTTCCTGCGGTGGCATGTAGCGCCAGGGGGCC
CAGGACATGTCAGGATTCGAGATTGGATGGAGGCCTAGAGCGGCCGAGCG
GCCACCACAGACCACACAACCCACGGTAGAGAGCGAGAGCCAAGTAAGTG
CAGCACGGGCACCACCATGTCAACCGCCTCTCTTATGCTAGAGAAGAATG
CTAGCTCCGACTGGGTGATCAACAGGATGAAGGGCACCAACTGGGGCGAC
AAACCGAACGTAGGCCATGCTAGTCTGTTCCAGTTCTTGCCGGGGTTCTA
CGCTGGCATGAGCGTAAAGGAGAGCGGCAAATGCTACAGCGAGTCTGATA
GAAATGCAGAGGCAGTCAAAGTTTACAAAAGCTTTGCTGTGCCGGCATTC
CTCCGCTGGTTGGTAGAGAAATACGACTTCACCACTACCCCAGCTTGGCT
CACGAAGGACATCATGGGCCGCAACTCGATGGGACCTAAAATCTTGCTGG
AAGCGGCCAATAAAGGTGATGAATGGATGGCAGCTACGATGCTTGTGCAA
TGCGCTTGTTCAGGAGTTACAGCAGTAGTTCTACCTAACTGAGCCAACTG
AGCCAACATCGCAACGTGTGCCCTGGTGGGAATTGTACGGAGTGTCGTGT
ACGCCACCTTGACGAAGAGAATGCATCCAATCGAAACGAGGTAGTAGTCG
GAAAGCTCTCGACGAGATGATTGCCACACCGCCATTTCCGCCACCACCAC
TGTGTGTGCTGTGGAGCAATCGAGCTTTGAAAATCTAGGGTGTGTGTAGT
ATCTCATGCCACCGACAAGATCACGGCTATCGGAGGCAGAAATTAATTCG
CCATACCGTAGTCTACCACAACAGCCGTAGGCCCTCTTCCTCTCCCTCCT
CGTTTTTTGACGCACACAAAAGGACAACAGGATGATGACAGCCAGCATTT
TATTTTCACACCGAACGACAAGGCAAACGGCGAGTGCGCTCTCGGTTCAG
TCTTGTCGGCGATTTCGATGCTGCAGCGTTCTAGCCGGCGTATGTCTGTT
CAGTTGGCATCGACCGCGCTAACCGGCTGACCGATGAAAATACGTAGTTG
TAGTCAGTAAGCAGGAAAAAAACACAACACATTCCAATCAAGTCTAGGGA
TTCTACGGACATGGGGGGCGCAGCAGTTGGGCAACAGGTTCCTGCTTCGG
AAGCACAAGGAGATTTCGTGTGTGTTCTTATTTTTGTATGAAACGCGTTA
CGTTTCCTCTTCCTCGCTCTCTCGTATCTTTCTGTCGTGGTTGTCTTCCT
CTAGCCTCTCGCCGCAGCAGGCGTTTTATTTTCGTGATGTACACACAACG
AAGATTTCCAAAACAAGCTTCGTTGGGGTGTGTAATGTGTGTTAAGTTGA
CTACACAGAATACATCTCCCCGGTCGGAGTAGGAAGGGTTGCGAACCCCG
TGTGGAAATTCCGTGCACCCGTCACCCCTCTGTAGGTGGCGGATGTTGTA
TTCCTTCTTCGTGGAAGAGGGAAGGTGACATTTGTTGTAAAGCGTTTTGC
TACATACCCAAGTCGAGTAGTTCAACAGGAGGAATGGGCATCGCAGCATA
GTTCCCTGCATACAATAGTAAATAGCGCGCCCCACCGGTCACGGTTGCAA
TGTGCCTCTCCCGTGTGCTCGTCCGTCCGTGCAGGCACACAGGGAAAACT
TTATGATGAAACCGAGGCGTCGCTCTGGCGTACAAGATTCGGGGATGTCT
TGTTAGCCCTACGGAGCGACTGGAACCAGACGAAGACATCAACAACAATT
TATGTTGTTTTGCGAAATGCGTCCATCTATAATTTGTGTGTACGTGTGGG
CCATCGCTTCGGCGGTGCAATCAAGTAGGGATACAGTCAGCGAGACCTGA
CTTGTTCGTGGTTTTGGTATATTTTGTGAGTTGGGTTGTTTTCCTTGGCA
TCGCGTGCCGAGCGGAGCCGATGAGCTCTAGGCTATTTCCTTTTCCGGAT
TTGTGCCCCAATTTCTCGTGCAGTATCCCGTTTTCTGTCCATGTTCTTTT
TCCTTTGTATTTTGGAGAAGTTTGTATCGTTTTCTGGGTAGTTGGCCAGT
GAGCACGGAAGGCGTGGGCGCCAGTTGGACCGGTACGGATGTTACAAGGC
ACTGAGCAAAGTTCTGAAGTATTTGTTAGTTCAGGCAACATTTCCATATC
TATTTGAAGCGGCCGTGGTAGCGGGGGCGGAGGGGGAGCTAACCGTCCCC
CGCAATATCCTTTCAGAACGCCCCGGGGAGCGCACGTACTCTCGTTCGTT
ATCCAGGGCACGGGGCGGAAGGTTCAAAGGCGTTGTTCTTGTCTATTTTG
GGGACCTACAGGCACACCAAAGTATTGGGCACGCGGACTGCTTGCGCCAT
GACCCACGATGTTGTGCTGTCCAGAGGGTTCCGTCTGTTTAGCCTGTATG
TTTTTTAAAGTTTAGGTATGATCTGGCAGTAACCTAGCTTGGTCGGTAGT
CTTTTGGCACCGGCAGGGTTCAGGTGTTGCGCACCCGCAGACTTTTGCCT
GTAGCCAGGAGTCCCGATGTGTACTTGAGCTGTAGACACGGCCACCCCTT
AATCTAGACAAGCATCAGCTTCGACACCAGTGTCAACCGATCCCTGTTGG
TTTTCGAGAAAAAACGCCCCGGGGCGAACTCGCATATCAGGGATCGATCC
CCCCCGACAGAAAACGAACTCCAACTTGTCGCGTTTCCCCGCCTCTGCTT
CATTTTGACGGGAGCACTACGATTGACCAGGGAATCGGTACTGGCTGCAC
GGCGGGCCAATACTGTGTAAGTGCCATGTGTCAGGGTTAACAGAAAATCG
AATTCTACATTTAGCAACCTCGCGCGGTCTGCCTGCCATCGACTCGGCGC
TCTTGGATCAATACTTGCGACAATTGAACATGCCGTCCTGCGGGAGGGAA
GTCGTGTACCGCCATAAAAAAATTGAGAGGGGAGCGAGCGTGGATACCGT
TCCCAGTGTCGCCATGATATTCACCATCCGTTCCTATCTCTGCTTGGCAC
CTTACATCATCCGGTCCAAAACACGCGGATGTCTTCCGTGGTCACAGACC
AGCTACCCAGATTTCCGGCACACACAATGCACTCGATAGTCAGAAGAGAA
AGCCAAAACGGTCCAGGTCTTGGCATACACCTTTACATATTAATAAAAAA
CAAGGTCCCAGTCAGACACATCGGGCGGAGGTATAAGTAGGAACATTCTC
GTTCGGTAGGCGGTGCCAAACCCCTTCACGCAGACAACATTAAAAGTCCA
CGATTCTGATCTATTCCTCCTACATTCACCGCTGGGGTTGCCACTGCCAT
GCCACTTGCGGTGGTTCTAGTCACCCACTTCACTCAGCCGTCGACCAACA
GGCGACTCAGATAGTGTTCCAAGGTCCGGTTACAGAAAACATAGAGCGTA
AAATACCAAACAGGGAGAGCGGTGAACTGCACCTAGATCACGGCGTACCA
CATACACAAACAGTGGACGGGCACAAAACACAACCTCGTACCGGGTACAC
TGTAAATAAGACGTTGTAACCAGCACCTGCACGCTGCCTGCATAACCTAC
CCGGTCCGGTAAACTGATGCAAAACCTTATATAAACCATTTCCATTTTGT
GGTCATAGGCCAACTACCCAACTAGGATTAACACACGCGTCAATCAAAGA
GAACACCTGAAAAATATANACTAGGGTTAACACACGCGTCAATCAAAGAG
AACACCTGAAAAATATAACAATCGCGACAACAAAACACAACCAGGGGTGT
AGAGAGAAAAAAATAAACTGGTCCTAGTGGATTGCTTGCAGCCCCTGGGG
CTGCACCCCCATTGCAAAAAATGTGGCGAACACCGACCAGTACTTGGATT
TCATAGCGGCATATCATGTAACGGTGCCTTCCATGAAGTGAATCAGTCGA
ATCCCTGAGAATGCACTCTAAAACACAGAGGAAGAAAGCCACGATACTAA
GGACATGTAGTACGGCTCCTCCAGCGAACCCCCTCCGAGCGTGAAACAAC
CAAGCCGGTTTGGCATACAGTTCTCAGGCTGAACGAAAACACGCGCGTAA
AAGAAAAGAAATTCACGCACACCAAACCAAAAAAAGCGCCACGTGCATAT
AAGCCAGTCGTGGTGTGTCTGAGCCACCGAATGTCGTT

Coding sequence (CDS) from alignment at Scaffold_49:17422..21709+

>EsuBft413_3a-0001 ID=EsuBft413_3a-0001|Name=EsuBft413_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=543bp|location=Sequence derived from alignment at Scaffold_49:17422..21709+ (Ectocarpus subulatus male Bft15b)
ATGTCAACCGCCTCTCTTATGCTAGAGAAGAATGCTAGCTCCGACTGGGT
GATCAACAGGATGAAGGGCACCAACTGGGGCGACAAACCGAACGTAGGCC
ATGCTAGTCTGTTCCAGTTCTTGCCGGGGTTCTACGCTGGCATGAGCGTA
AAGGAGAGCGGCAAATGCTACAGCGAGTCTGATAGAAATGCAGAGGCAGT
CAAAGTTTACAAAAGCTTTGCTGTGCCGGCATTCCTCCGCTGGTTGGTAG
AGAAATACGACTTCACCACTACCCCAGCTTGGCTCACGAAGGACATCATG
GGCCGCAACTCGATGGGACCTAAAATCTTGCTGGAAGCGGCCAATAAAGG
CACACAGGGAAAACTTTATGATGAAACCGAGGCGTCGCTCTGGCGTACAA
GATTCGGGGATGTCTTGTTAGCCCTACGGAGCGACTGGAACCAGACGAAG
ACATCAACAACAATTTATGTTGTTTTGCGAAATGCGTCCATCTATAATTT
GTGTGTACGTGTGGGCCATCGCTTCGGCGGTGCAATCAAGTAG