EsuBft413_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft413_14a-0001
Unique Name	EsuBft413_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_49	contig	Scaffold_49:154609..156569 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LCS5
ProteomeId	EsuBft413_14
Protein domains	PTHR23272
Protein domains	IPR008906
Protein domains	Coil
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	zinc finger bed domain-containing protein 1 os:homo sapiens gn:zbed1 pe:1 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	1650
Hectar predicted targeting category	other localisation
Evalue	1.7e-242
EggNOG OGs	KOG1121@1\|root,KOG1121@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15
Description	protein dimerization activity
COG category	E

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0046983
GO	0044424

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft413_14a	EsuBft413_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_49 154609..156569 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_14a-0001-exon	agat-exon-23125	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 154609..154689 +
EsuBft413_14a-0001-exon	EsuBft413_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 154951..156515 +
EsuBft413_14a-0001-exon	agat-exon-23126	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 156566..156569 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_14a-0001-cds	EsuBft413_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_49 154609..154689 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_14a-0001	EsuBft413_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_49 154609..156569 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_49:154609..156569+
coding sequence from alignment at Scaffold_49:154609..156569+

spliced messenger RNA

>EsuBft413_14a-0001 ID=EsuBft413_14a-0001|Name=EsuBft413_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1650bp|location=Sequence derived from alignment at Scaffold_49:154609..156569+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGACTACTGCAGCTATCTGGCGAAGGAAAGAGATCGCGAAGTGCT
GTCCCTGGCCTCAGCGGGAGTTTCGTTTCTGTTTGTCGAGTACCCCGAGT
TCCACGCCGTCGTCTCCGGGCTCAACAAGAAGGCACGGGCTCCTATTCGC
CGGGCTCTCGTCGAGAAGATGCGCGAGATCAAGAAAAACCTCGAAAGCGA
GGTGGCGCTCATGCTCGATGATGAGTATGTCGCGATTACCACGGACGGCT
GGACGTCTCGAAGTAACGAGTCGTACATGTCGCTGACCGTGGCCTACATC
GACGTCGGGTGGCAGCTGCATCATCTTTCCCTGAACTGCACGAAGCATAC
AGGGAGCACCCACGGCGAGGACTTGGCGAGGGAGATAACCAGCATGATCG
AACGCCATGGCCTCACCGGTCGGGTGACGGCATGCGTTACCGACTGCGAG
CCGTCCATGGTCAAGGCGGGTCGCCTGCTGGAGGTGGGTGGGAGCAATCT
TGAACACATCGGTTGCTCCAACCATCGCATGGAGTCAACGACGTCATCGG
TCTTCAACGGCAAGAGTCTGGGCGCTTTGGCGAAGGCGCGCGCGGTGGTT
GGCCGCTACAAGAGATCGAGTCAAATGTCGGGCCGCCTTGCCGTATTCAT
CGGCATCCTCAAGCTTTCCCCTCTGTCCGTGCTGCAGGACGTGGAGACGA
GGTGGTGGTCGTCATGGGCGATGATCGAGCGCCTCCTCTACCTCATGAAG
GCCATCAAGCTACATGAGTCCACGGACAACATTGCCCCAGTGTTGTCCGA
GACAGATTGGGAGGTGCTGCGGCTGATCGAGCCCATCCTGCGGCCGTTCA
TGCAGGCGCAGAAGGATCTGGAGGGGGCAAAGTACGTGACGGGTAGCATG
ACTGTGCCGAAGATCGGGGAGCTGCGGAATGGCCTCGAGGCGGCAATTGC
TGACCTCAGAGCCACGGACCGATTCGGGATCAGTGCTTCGACGAGGGAGG
CGATGGAGGCCGTTTTGCCGGACGCGGAAGCGTTGTGGGAGGATTTTCTC
AACCGCTGGGGTGACGGCTCAAGCATCCTCGAATACAGGGAGGGAAAGCG
GCGCCAACCCCAGGGCTTCAAGCTGCAGCAGGTGTGCGCAACGGCCGTCG
ACCCGCGTGCGAAGCACCTTTACGGCATACGCCAGGCGGAGCATGCCAGC
GTGTGGCGCGCTGTCGCAACGAAAGCGGTGGACATTGCCGCAGAGAAGTT
CTCCAGCGACAACACGGCTACCTCCGGCTCTGCACCTGCTGCCCAACCCG
TGGGGACGCCGCCGGTGGCACCCGGCGGGCAGGGAGCCCCGAAGCGGGCT
CGCTTGAGTGCGTTCGAGGCTGCCGCTGCTGCCCACGCCGGTGCGGCGGC
TAGCAGCGCTGGTGGCCAAACTCTGGACGAGAAGCGAGAGCAATTGGCGA
GTGTCGTCGACCTCGAGGTAGCTTCTTTCCAGACCACACCTGGGATAAGC
ATATGGTACTGGGGAACGGACGGCAAGAAGGTCTACAACGATCCTCTGGA
TTGGTGGCGCACGAGGCAAATGGAGTTCCCTCATCTGGCAGCGCTGGCTC
GTCGTGTGCTTGCCATTCCATCGTCTCAGGCGCACTCCGAGCGCGTATGA

protein sequence of EsuBft413_14a-0001

>EsuBft413_14 ID=EsuBft413_14|Name=EsuBft413_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=549bp
MCDYCSYLAKERDREVLSLASAGVSFLFVEYPEFHAVVSGLNKKARAPIR
RALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYI
DVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCE
PSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLGALAKARAVV
GRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMK
AIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSM
TVPKIGELRNGLEAAIADLRATDRFGISASTREAMEAVLPDAEALWEDFL
NRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHAS
VWRAVATKAVDIAAEKFSSDNTATSGSAPAAQPVGTPPVAPGGQGAPKRA
RLSAFEAAAAAHAGAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGIS
IWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV

mRNA from alignment at Scaffold_49:154609..156569+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft413_14a-0001 ID=EsuBft413_14a-0001|Name=EsuBft413_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1961bp|location=Sequence derived from alignment at Scaffold_49:154609..156569+ (Ectocarpus subulatus male Bft15b)
ATGTGTGACTACTGCAGCTATCTGGCGAAGGAAAGAGATCGCGAAGTGCT
GTCCCTGGCCTCAGCGGGAGTTTCGTTTCTGGTGAAAAGTAATCTTCCTC
GTTTTTGTCCCCTGTTGTCACTTTTTTTCATTTTTTCTCTCTCTCTCATG
TACTTATTTCACCTCGTGTTTCCGGTGGCGGCGCTCGAAGCAGTGGTGTA
TCTTTGTGTACATTTTTTCTCCTTCTCCCGGACGGGACAACAGCACATCA
TATACTACATTGATCACGTGATACATATACCTTCCGCTGCGCTACTCACT
ACCCTATTCCCTCCCGCCGCGGCCCTCTGATTCATTCTCCAGTTTGTCGA
GTACCCCGAGTTCCACGCCGTCGTCTCCGGGCTCAACAAGAAGGCACGGG
CTCCTATTCGCCGGGCTCTCGTCGAGAAGATGCGCGAGATCAAGAAAAAC
CTCGAAAGCGAGGTGGCGCTCATGCTCGATGATGAGTATGTCGCGATTAC
CACGGACGGCTGGACGTCTCGAAGTAACGAGTCGTACATGTCGCTGACCG
TGGCCTACATCGACGTCGGGTGGCAGCTGCATCATCTTTCCCTGAACTGC
ACGAAGCATACAGGGAGCACCCACGGCGAGGACTTGGCGAGGGAGATAAC
CAGCATGATCGAACGCCATGGCCTCACCGGTCGGGTGACGGCATGCGTTA
CCGACTGCGAGCCGTCCATGGTCAAGGCGGGTCGCCTGCTGGAGGTGGGT
GGGAGCAATCTTGAACACATCGGTTGCTCCAACCATCGCATGGAGTCAAC
GACGTCATCGGTCTTCAACGGCAAGAGTCTGGGCGCTTTGGCGAAGGCGC
GCGCGGTGGTTGGCCGCTACAAGAGATCGAGTCAAATGTCGGGCCGCCTT
GCCGTATTCATCGGCATCCTCAAGCTTTCCCCTCTGTCCGTGCTGCAGGA
CGTGGAGACGAGGTGGTGGTCGTCATGGGCGATGATCGAGCGCCTCCTCT
ACCTCATGAAGGCCATCAAGCTACATGAGTCCACGGACAACATTGCCCCA
GTGTTGTCCGAGACAGATTGGGAGGTGCTGCGGCTGATCGAGCCCATCCT
GCGGCCGTTCATGCAGGCGCAGAAGGATCTGGAGGGGGCAAAGTACGTGA
CGGGTAGCATGACTGTGCCGAAGATCGGGGAGCTGCGGAATGGCCTCGAG
GCGGCAATTGCTGACCTCAGAGCCACGGACCGATTCGGGATCAGTGCTTC
GACGAGGGAGGCGATGGAGGCCGTTTTGCCGGACGCGGAAGCGTTGTGGG
AGGATTTTCTCAACCGCTGGGGTGACGGCTCAAGCATCCTCGAATACAGG
GAGGGAAAGCGGCGCCAACCCCAGGGCTTCAAGCTGCAGCAGGTGTGCGC
AACGGCCGTCGACCCGCGTGCGAAGCACCTTTACGGCATACGCCAGGCGG
AGCATGCCAGCGTGTGGCGCGCTGTCGCAACGAAAGCGGTGGACATTGCC
GCAGAGAAGTTCTCCAGCGACAACACGGCTACCTCCGGCTCTGCACCTGC
TGCCCAACCCGTGGGGACGCCGCCGGTGGCACCCGGCGGGCAGGGAGCCC
CGAAGCGGGCTCGCTTGAGTGCGTTCGAGGCTGCCGCTGCTGCCCACGCC
GGTGCGGCGGCTAGCAGCGCTGGTGGCCAAACTCTGGACGAGAAGCGAGA
GCAATTGGCGAGTGTCGTCGACCTCGAGGTAGCTTCTTTCCAGACCACAC
CTGGGATAAGCATATGGTACTGGGGAACGGACGGCAAGAAGGTCTACAAC
GATCCTCTGGATTGGTGGCGCACGAGGCAAATGGAGTTCCCTCATCTGGC
AGCGCTGGCTCGTCGTGTGCTTGCCATTCCATCGTCTCAGGCGCACTCCG
AGCGCGTGTTTTCCACAGCAGGGCTCATGGTTTCGGCGAAGCGGACTCGC
CTTGCAGATGA

Coding sequence (CDS) from alignment at Scaffold_49:154609..156569+

>EsuBft413_14a-0001 ID=EsuBft413_14a-0001|Name=EsuBft413_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1650bp|location=Sequence derived from alignment at Scaffold_49:154609..156569+ (Ectocarpus subulatus male Bft15b)
ATGTGTGACTACTGCAGCTATCTGGCGAAGGAAAGAGATCGCGAAGTGCT
GTCCCTGGCCTCAGCGGGAGTTTCGTTTCTGTTTGTCGAGTACCCCGAGT
TCCACGCCGTCGTCTCCGGGCTCAACAAGAAGGCACGGGCTCCTATTCGC
CGGGCTCTCGTCGAGAAGATGCGCGAGATCAAGAAAAACCTCGAAAGCGA
GGTGGCGCTCATGCTCGATGATGAGTATGTCGCGATTACCACGGACGGCT
GGACGTCTCGAAGTAACGAGTCGTACATGTCGCTGACCGTGGCCTACATC
GACGTCGGGTGGCAGCTGCATCATCTTTCCCTGAACTGCACGAAGCATAC
AGGGAGCACCCACGGCGAGGACTTGGCGAGGGAGATAACCAGCATGATCG
AACGCCATGGCCTCACCGGTCGGGTGACGGCATGCGTTACCGACTGCGAG
CCGTCCATGGTCAAGGCGGGTCGCCTGCTGGAGGTGGGTGGGAGCAATCT
TGAACACATCGGTTGCTCCAACCATCGCATGGAGTCAACGACGTCATCGG
TCTTCAACGGCAAGAGTCTGGGCGCTTTGGCGAAGGCGCGCGCGGTGGTT
GGCCGCTACAAGAGATCGAGTCAAATGTCGGGCCGCCTTGCCGTATTCAT
CGGCATCCTCAAGCTTTCCCCTCTGTCCGTGCTGCAGGACGTGGAGACGA
GGTGGTGGTCGTCATGGGCGATGATCGAGCGCCTCCTCTACCTCATGAAG
GCCATCAAGCTACATGAGTCCACGGACAACATTGCCCCAGTGTTGTCCGA
GACAGATTGGGAGGTGCTGCGGCTGATCGAGCCCATCCTGCGGCCGTTCA
TGCAGGCGCAGAAGGATCTGGAGGGGGCAAAGTACGTGACGGGTAGCATG
ACTGTGCCGAAGATCGGGGAGCTGCGGAATGGCCTCGAGGCGGCAATTGC
TGACCTCAGAGCCACGGACCGATTCGGGATCAGTGCTTCGACGAGGGAGG
CGATGGAGGCCGTTTTGCCGGACGCGGAAGCGTTGTGGGAGGATTTTCTC
AACCGCTGGGGTGACGGCTCAAGCATCCTCGAATACAGGGAGGGAAAGCG
GCGCCAACCCCAGGGCTTCAAGCTGCAGCAGGTGTGCGCAACGGCCGTCG
ACCCGCGTGCGAAGCACCTTTACGGCATACGCCAGGCGGAGCATGCCAGC
GTGTGGCGCGCTGTCGCAACGAAAGCGGTGGACATTGCCGCAGAGAAGTT
CTCCAGCGACAACACGGCTACCTCCGGCTCTGCACCTGCTGCCCAACCCG
TGGGGACGCCGCCGGTGGCACCCGGCGGGCAGGGAGCCCCGAAGCGGGCT
CGCTTGAGTGCGTTCGAGGCTGCCGCTGCTGCCCACGCCGGTGCGGCGGC
TAGCAGCGCTGGTGGCCAAACTCTGGACGAGAAGCGAGAGCAATTGGCGA
GTGTCGTCGACCTCGAGGTAGCTTCTTTCCAGACCACACCTGGGATAAGC
ATATGGTACTGGGGAACGGACGGCAAGAAGGTCTACAACGATCCTCTGGA
TTGGTGGCGCACGAGGCAAATGGAGTTCCCTCATCTGGCAGCGCTGGCTC
GTCGTGTGCTTGCCATTCCATCGTCTCAGGCGCACTCCGAGCGCGTATGA