EsuBft413_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft413_13a-0001
Unique NameEsuBft413_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_49contigScaffold_49:145070..145989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft413_13
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length92
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft413_13aEsuBft413_13aEctocarpus subulatus male Bft15bgeneScaffold_49 145070..145989 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft413_13a-0001-exonEsuBft413_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_49 145070..145989 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft413_13a-0001-exonagat-three_prime_utr-15290Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_49 145070..145503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft413_13a-0001-cdsEsuBft413_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_49 145504..145794 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft413_13a-0001-exonagat-five_prime_utr-9742Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_49 145795..145989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft413_13a-0001EsuBft413_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_49 145504..145794 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft413_13a-0001 ID=EsuBft413_13a-0001|Name=EsuBft413_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=920bp|location=Sequence derived from alignment at Scaffold_49:145070..145989- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGAGCACGAGCGTGCAGGACGCGCAGAAGCAGGGATCCCGCGTCGTGG
ACGAGGAGATCAGCGAACTGTTGGCAGAACTAAACATCGAACCCGGAAAG
CCGGTCGCGGGGGAAGCGGTGGCCGCGATTCAGGGGCTACGATCGAGGAC
GACGAGGAGGTGGTAGAGGCTCTTCGATTGGACGTGGTGGAAGACATGAC
AGCACTGCTGGCTGGAACGAACTTGTCTACCGGCGGCGACGACGAGGAGG
ACGAACAGGACCAGGGCGGCGGCGGTGAGAACACGGGGCGCGGTGGCCGT
GCCCCACGTGCGCCACCGGGTTATGAAGAACGGTCGTCTCACTTCGGCGC
CCTGGAAGTGGCAGCGGAGGACAGTGGCAACGGAGACGCGGCGTTCTACC
TAACGAAAGCGAAGATGTCGATGATCGCAGCGCATTCCGCTAGGCGGGTG
CGCCAGACAGATGTTAGAGGATTTGTCGCGACGTAGAGTTCATGGTTGTT
TCTTTTTGTTGCGGTTCGCTTCCTGTCGTGTACGTAGAGTTTTTTTTTTC
TTCTTGCAACATCGAAGCGGGTACGCCAGGTAGACACTCCAGGGTCGCGA
CGTAGTTTGGGGGGGAGATACAACTGTAGTGCAGTAGTATTGGTTTTTGT
TTTCTTGCAGTGCGCTTCCTGTCGTGTACGTAGAGTTTTTTTTTTCTTCT
TGCAACATCGAAGCGGGTACGCCAGGTAGACACTCCAGGGTCGCGACGTA
GTTTGGGGGGGAGATACAACTGTAGTGCAGTAGTATTGGTTTTTGTTTTC
TTGCAGTGCGCTTCCTGTCGTGTTTGTTTTTCTGTTTTGTCTTTTGTATC
TTGCAACATAGAAGGAGGGGCTCTGGGGCTGAGATATAGCTACGTCCACT
CTGTACGAACGGGAGCTCTA
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protein sequence of EsuBft413_13a-0001

>EsuBft413_13 ID=EsuBft413_13|Name=EsuBft413_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=96bp
MTALLAGTNLSTGGDDEEDEQDQGGGGENTGRGGRAPRAPPGYEERSSHF
GALEVAAEDSGNGDAAFYLTKAKMSMIAAHSARRVRQTDVRGFVAT
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mRNA from alignment at Scaffold_49:145070..145989-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft413_13a-0001 ID=EsuBft413_13a-0001|Name=EsuBft413_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=920bp|location=Sequence derived from alignment at Scaffold_49:145070..145989- (Ectocarpus subulatus male Bft15b)
GTTGAGCACGAGCGTGCAGGACGCGCAGAAGCAGGGATCCCGCGTCGTGG
ACGAGGAGATCAGCGAACTGTTGGCAGAACTAAACATCGAACCCGGAAAG
CCGGTCGCGGGGGAAGCGGTGGCCGCGATTCAGGGGCTACGATCGAGGAC
GACGAGGAGGTGGTAGAGGCTCTTCGATTGGACGTGGTGGAAGACATGAC
AGCACTGCTGGCTGGAACGAACTTGTCTACCGGCGGCGACGACGAGGAGG
ACGAACAGGACCAGGGCGGCGGCGGTGAGAACACGGGGCGCGGTGGCCGT
GCCCCACGTGCGCCACCGGGTTATGAAGAACGGTCGTCTCACTTCGGCGC
CCTGGAAGTGGCAGCGGAGGACAGTGGCAACGGAGACGCGGCGTTCTACC
TAACGAAAGCGAAGATGTCGATGATCGCAGCGCATTCCGCTAGGCGGGTG
CGCCAGACAGATGTTAGAGGATTTGTCGCGACGTAGAGTTCATGGTTGTT
TCTTTTTGTTGCGGTTCGCTTCCTGTCGTGTACGTAGAGTTTTTTTTTTC
TTCTTGCAACATCGAAGCGGGTACGCCAGGTAGACACTCCAGGGTCGCGA
CGTAGTTTGGGGGGGAGATACAACTGTAGTGCAGTAGTATTGGTTTTTGT
TTTCTTGCAGTGCGCTTCCTGTCGTGTACGTAGAGTTTTTTTTTTCTTCT
TGCAACATCGAAGCGGGTACGCCAGGTAGACACTCCAGGGTCGCGACGTA
GTTTGGGGGGGAGATACAACTGTAGTGCAGTAGTATTGGTTTTTGTTTTC
TTGCAGTGCGCTTCCTGTCGTGTTTGTTTTTCTGTTTTGTCTTTTGTATC
TTGCAACATAGAAGGAGGGGCTCTGGGGCTGAGATATAGCTACGTCCACT
CTGTACGAACGGGAGCTCTA
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Coding sequence (CDS) from alignment at Scaffold_49:145070..145989-

>EsuBft413_13a-0001 ID=EsuBft413_13a-0001|Name=EsuBft413_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=291bp|location=Sequence derived from alignment at Scaffold_49:145070..145989- (Ectocarpus subulatus male Bft15b)
ATGACAGCACTGCTGGCTGGAACGAACTTGTCTACCGGCGGCGACGACGA
GGAGGACGAACAGGACCAGGGCGGCGGCGGTGAGAACACGGGGCGCGGTG
GCCGTGCCCCACGTGCGCCACCGGGTTATGAAGAACGGTCGTCTCACTTC
GGCGCCCTGGAAGTGGCAGCGGAGGACAGTGGCAACGGAGACGCGGCGTT
CTACCTAACGAAAGCGAAGATGTCGATGATCGCAGCGCATTCCGCTAGGC
GGGTGCGCCAGACAGATGTTAGAGGATTTGTCGCGACGTAG
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