EsuBft413_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft413_12a-0001
Unique NameEsuBft413_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_49contigScaffold_49:133840..137493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FYZ5
ProteomeIdEsuBft413_12
Protein domainsG3DSA
Protein domainsIPR016137
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2880.D7FYZ5|-
Length196
Hectar predicted targeting categoryother localisation
Evalue1.5e-10
EggNOG OGs2D0MX@1|root,2SERP@2759|Eukaryota
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-00_005630.1
Date last modified2016-06-15
Date creation2016-06-15
DescriptionRegulator of G protein signaling domain
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0038032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft413_12aEsuBft413_12aEctocarpus subulatus male Bft15bgeneScaffold_49 133840..137493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft413_12a-0001EsuBft413_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_49 135367..137493 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft413_12a-0001-exonagat-exon-23122Ectocarpus subulatus male Bft15bexonScaffold_49 133840..135514 -
EsuBft413_12a-0001-exonagat-exon-23123Ectocarpus subulatus male Bft15bexonScaffold_49 136023..136103 -
EsuBft413_12a-0001-exonagat-exon-23124Ectocarpus subulatus male Bft15bexonScaffold_49 136485..136598 -
EsuBft413_12a-0001-exonEsuBft413_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_49 137399..137493 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft413_12a-0001-exonagat-three_prime_utr-15289Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_49 133840..135366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft413_12a-0001-cdsEsuBft413_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_49 135367..135514 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft413_12a-0001 ID=EsuBft413_12a-0001|Name=EsuBft413_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1965bp|location=Sequence derived from alignment at Scaffold_49:133840..137493- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAAGGTGCCAGAGGTGGCTGAGGCCTTCCGGGGATTCGCGCACCG
GGCGCTGTGCCAGGAGTCCATCATGTTTCTGGAGGAAGTCACCAAGTACG
AAAGCGGGGACTACAGCATTGCGAAGCCCATAGCCAGCCAGTTCGCGGCG
TTCAACGCGATAGTCAAGCGCTTTGTAGTCGACGGGGCGCTGGATGAGAT
CAACATCGGCGGTACGGACAAGGAGCGCATCCTGAAAATTTTCCAGTCCG
GTTCCACCGCGTTTTTCGAAATGAACGAAGCGGGGCGAAGGCTGGTGCTG
AACAAGGCATACATCGAGATCAGGGACATGCTGGAGACGAATCTCTTGCA
TCGGTTTCTTCACACGGAAGCATTTAGAACGCTCTTAGCGGGGGCCGACC
CTAATCCCGGACCCTTTCCCGCGCGCGGCGGGCCCTAACACCAGCGGGAA
CATGCTGGCGTCGGAACCGGAACGGCCGATTCTTGTGAAGATGACATCAA
CCACAGCGACAACAGCACCGACAGCGACCTCCACACCATGGGCACGGGTG
CGGGGGAGGGCTGTTGTATTTCGTGCTTCCGCATTTTTAATTGTTAGGCC
GACCTAGGAGGGAGTGTTCGATTGGTTCGGTATTGCCCTCGAAGGCTTTC
TCGCGTGCGACGGGTGGTTTGGAAGGAACCTTCCCACTTACTGTTGTCTC
CGGCCGACCTCGTTGTGGCACCCAGGTTGTTTGCTGGGCCGTCCCGAATT
CTGTGCGGGGTGGAGTTTGCTCTGTTCTTGAGCCGGCAAGTTTGTACACA
GTGTATGAAGACATTAGCACGACAATGAATGTTGGGATTTTGCGTGGGTA
CCTTATTGTTACTGTAGTCGTCTGCCGGGGGGCGGAGCTTGATACTCGTT
CATGTATTATTGTAGAATTCCAGAAGTGGGGCTATGGCGGGGTGTGTCTG
TCTTTTTATCCTTAGCATATTTTTAGTATCGACCGCGCTCTGTGTATAGG
GATGGGGGAGACGACCCAGGACACTCTCACTGGTTTTCCGGGGTCTCGTT
GGAGATACGAAGAGAGCGGCGGCTGAGATTATCACGCTGTACCGCCCGCG
AGCTCTGCTGTTTGTTAGAGGCTGAGGTTTTTTTAGGCACGCTCACTTGT
TTCCAGGAGCTAGTTGGAAAATCGCACAGCAATCAAGCGGCTATGACCGA
CGTTGCTACGCTGCACCGACCGCGCCTGTCATTTTACTGTTTACGGCGCT
ACGGCCATGTGGCAGGCAGCTCATGATCTATTCCCGTTTGTTGCAGAAGT
GTGTTCCAAACCGATACTCCAAACCGATACTCAAACGAGAGGAGTGCACC
CAACGTGACTGGTGCGTTCATGACAAGGCGCATCGACATCAAAGGTTGAG
CTTTCTCTCGTAGCAGTTATCATGGGGAGAACTTCCTTTTTCTCCGTTCA
AGCCTGCCGAGAATCTCCCTTCGCGAATAAATGGTAAGAAGCAGTGGACG
TGGGGGGTGTCCGATTCTCGCCAAGAAATTAAACAAGCTTCCTCGCGCTG
GTAGTGGCTAGTAGCCTTCGCGGGTCTTAATTGACAAGCAACAGTTTGGA
TAAGATATGGGATCGGTGGAATTGCGGGAGATGCGGTTAGGGCTTGGGTT
TACATAACCCCTGCCTCTCTATTTTACACTTCGAAGTAGATGAGTTATAT
TTCTTCGCGAAAACAGGCCATGTTGGCTGTTGTGTCGGCGCGCAGATTGG
ATTCAGTTTCGAATGGGAGTTGCAGGTCTGATTTATCTCCCGCTCTTGCG
TGAGCGGGGTTAATTGGTGTCGGAACTCATCCATTTTTTTGGTGCTGCGC
TCGTGCATGTGACTAGAGTAGAGTTGTTTTTCCCGTTTTTGCGTTACACC
CCGCCGGTCTCATTGTAACTTGAATGAGACATTGACCAAGACGTTTTTGT
CAGGAAAACCCGAGA
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protein sequence of EsuBft413_12a-0001

>EsuBft413_12 ID=EsuBft413_12|Name=EsuBft413_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=145bp
MAKVPEVAEAFRGFAHRALCQESIMFLEEVTKYESGDYSIAKPIASQFAA
FNAIVKRFVVDGALDEINIGGTDKERILKIFQSGSTAFFEMNEAGRRLVL
NKAYIEIRDMLETNLLHRFLHTEAFRTLLAGADPNPGPFPARGGP
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mRNA from alignment at Scaffold_49:133840..137493-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft413_12a-0001 ID=EsuBft413_12a-0001|Name=EsuBft413_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3654bp|location=Sequence derived from alignment at Scaffold_49:133840..137493- (Ectocarpus subulatus male Bft15b)
ATGGCCAAGGTGCCAGAGGTGGCTGAGGCCTTCCGGGGATTCGCGCACCG
GGCGCTGTGCCAGGAGTCCATCATGTTTCTGGAGGAAGTCACCAAGTGAG
ATACAGAGGATGGTTGTAGCTTCTGCAAGGTAAAATGACAGCAGCGGTCA
GTGCTTGTTTGCGACAATGGTTGTAGGATGCTCAGAACTCCACCCGTAAG
AGATGAAGCTACCTACTGCGGTAGCGAGGCGTTGGTTGAAAAATGGAACT
TATGGTGTTGAAGGTCGGATTTATCGTTGCCGCATCTGATATCGAAATGG
TCACCAGGAAGGCGCCGTAAGCGAGTGTTTTTTTCGAGGTTTACATTATG
CATCTACTGTAGTTCGCTGGGCTAGGCGCCTGGACTGTAGACAGGTCACC
ACTCAACTGTCCCTCGGGTACTTCGATGGCCTCTACCTCTACTTCATGGT
CTAGCCCGCCAAAGGATGCAAACTACTGTAACTAACTTACGTCGGAGGGG
ATGTAGGAATGCCAATCGCGTGTTTGAAGATTTTGCCGGTAGATGCATGT
GCTGTGCCAGGTATTTTATTAGCCTTGTCATCGGAGATGGTACGGGGACA
ATGAGGCTTACTTGACGAACAGTGCACTATTTGCAGCTTGACAGTTTCTT
CCGCAGCCGAAACATATTGTCAGCCACATTTTCCCTGTTCTACGTCGTTC
GTTGTGCGCCAACTCGAAGCAGGTAACCGAAATGAGAGTAGATGGAGGCA
TGCTTTGCTAAAACCGGCCCTTCCTCTTGTCTGCCAGCAATATTTTACCC
AGCATGCCCGTTGGTTGTTCCACGTTGGCGTGCAGGTCGATTCGACCGAA
TCTAACTCGTTGGTTGCATGATTTTTGCTTTGATCGTTGCCCCAGGTACG
AAAGCGGGGACTACAGCATTGCGAAGCCCATAGCCAGCCAGTTCGCGGCG
TTCAACGCGATAGTCAAGCGCTTTGTAGTCGACGGGGCGCTGGATGAGAT
CAACATCGGGTGAGGCTGCAGGCGGGAAAACACGAGATGATGGTGAAGCG
AGAATCGTTCTCGAAGAGATAAGAAGGAAAAACAATACTCCTGGAGTATG
AATGATCAGTAGCGTGCTGTATTGCATCGAAGAGAGCAGGAAATATTGTT
CCGCCCGCCGGGGCATGAGAAGTGTGCCGAGCATCATGCGGAGTTACTTG
GCCGCCGCCGAAGCACCGAGGCTCTTGCTCATTTCGGCAGCGACGAAAAC
ATCGTCTCGAGACCACCCGTGATTGCAGAAAAACTTACGAGGATAAATGC
CTGGGCTTCCCCTTACTGACGCCGCCCCTGATACATTATGCCCCCTCAAG
ACTCCCTCTCCCTGTCGCCGGCGCCCGTGTGACGACACAGCGGTACGGAC
AAGGAGCGCATCCTGAAAATTTTCCAGTCCGGTTCCACCGCGTTTTTCGA
AATGAACGAAGCGGGGCGAAGGTCGGTGAATCCCGAGGACGACTGCATCA
TCACGCCTCGCTTTATTAGTCTATACTGAAGTATGATTTTATTTTTTTTC
TTACAGACAACACAACAAATCCTTCGATAAATTAGCAATGACTTTAGACT
ACAGTGATGCACGGTGACCAACTAATATTTCTACGGTTCCTGAACAGCAT
TCTCCCTGTGTTTGTTATTTAAGCAACCGTAATGAAGGGGTCGGGGTTTC
TTGCATGGTCCGTGGTTTGAACCTTATGCTTGCAAGGGCTCTCCCCCGCG
AATCGTTTCTTCCTCGCCTCGTCGTGCACGAACTTCGGCGCCTGCTGTCC
AACGTTTCTGTCACGTGGCCCCTCTCTCGCTATCCGTTCTTGTACGTGCG
TACACGACAGCGAGTCAATCCCCTTTCTCCCAGCATCTGCTGATGACTTG
TCTATTTGTTGCCCTGTCCCGTGCGACACCTACCGCTGCCATGCTTTTTT
CACTTTTGCCATTGCGTCTCCGCGTCCAGGCTGGTGCTGAACAAGGCATA
CATCGAGATCAGGGACATGCTGGAGACGAATCTCTTGCATCGGTTTCTTC
ACACGGAAGCATTTAGAACGCTCTTAGCGGGGGCCGACCCTAATCCCGGA
CCCTTTCCCGCGCGCGGCGGGCCCTAACACCAGCGGGAACATGCTGGCGT
CGGAACCGGAACGGCCGATTCTTGTGAAGATGACATCAACCACAGCGACA
ACAGCACCGACAGCGACCTCCACACCATGGGCACGGGTGCGGGGGAGGGC
TGTTGTATTTCGTGCTTCCGCATTTTTAATTGTTAGGCCGACCTAGGAGG
GAGTGTTCGATTGGTTCGGTATTGCCCTCGAAGGCTTTCTCGCGTGCGAC
GGGTGGTTTGGAAGGAACCTTCCCACTTACTGTTGTCTCCGGCCGACCTC
GTTGTGGCACCCAGGTTGTTTGCTGGGCCGTCCCGAATTCTGTGCGGGGT
GGAGTTTGCTCTGTTCTTGAGCCGGCAAGTTTGTACACAGTGTATGAAGA
CATTAGCACGACAATGAATGTTGGGATTTTGCGTGGGTACCTTATTGTTA
CTGTAGTCGTCTGCCGGGGGGCGGAGCTTGATACTCGTTCATGTATTATT
GTAGAATTCCAGAAGTGGGGCTATGGCGGGGTGTGTCTGTCTTTTTATCC
TTAGCATATTTTTAGTATCGACCGCGCTCTGTGTATAGGGATGGGGGAGA
CGACCCAGGACACTCTCACTGGTTTTCCGGGGTCTCGTTGGAGATACGAA
GAGAGCGGCGGCTGAGATTATCACGCTGTACCGCCCGCGAGCTCTGCTGT
TTGTTAGAGGCTGAGGTTTTTTTAGGCACGCTCACTTGTTTCCAGGAGCT
AGTTGGAAAATCGCACAGCAATCAAGCGGCTATGACCGACGTTGCTACGC
TGCACCGACCGCGCCTGTCATTTTACTGTTTACGGCGCTACGGCCATGTG
GCAGGCAGCTCATGATCTATTCCCGTTTGTTGCAGAAGTGTGTTCCAAAC
CGATACTCCAAACCGATACTCAAACGAGAGGAGTGCACCCAACGTGACTG
GTGCGTTCATGACAAGGCGCATCGACATCAAAGGTTGAGCTTTCTCTCGT
AGCAGTTATCATGGGGAGAACTTCCTTTTTCTCCGTTCAAGCCTGCCGAG
AATCTCCCTTCGCGAATAAATGGTAAGAAGCAGTGGACGTGGGGGGTGTC
CGATTCTCGCCAAGAAATTAAACAAGCTTCCTCGCGCTGGTAGTGGCTAG
TAGCCTTCGCGGGTCTTAATTGACAAGCAACAGTTTGGATAAGATATGGG
ATCGGTGGAATTGCGGGAGATGCGGTTAGGGCTTGGGTTTACATAACCCC
TGCCTCTCTATTTTACACTTCGAAGTAGATGAGTTATATTTCTTCGCGAA
AACAGGCCATGTTGGCTGTTGTGTCGGCGCGCAGATTGGATTCAGTTTCG
AATGGGAGTTGCAGGTCTGATTTATCTCCCGCTCTTGCGTGAGCGGGGTT
AATTGGTGTCGGAACTCATCCATTTTTTTGGTGCTGCGCTCGTGCATGTG
ACTAGAGTAGAGTTGTTTTTCCCGTTTTTGCGTTACACCCCGCCGGTCTC
ATTGTAACTTGAATGAGACATTGACCAAGACGTTTTTGTCAGGAAAACCC
GAGA
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Coding sequence (CDS) from alignment at Scaffold_49:133840..137493-

>EsuBft413_12a-0001 ID=EsuBft413_12a-0001|Name=EsuBft413_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=438bp|location=Sequence derived from alignment at Scaffold_49:133840..137493- (Ectocarpus subulatus male Bft15b)
ATGGCCAAGGTGCCAGAGGTGGCTGAGGCCTTCCGGGGATTCGCGCACCG
GGCGCTGTGCCAGGAGTCCATCATGTTTCTGGAGGAAGTCACCAAGTACG
AAAGCGGGGACTACAGCATTGCGAAGCCCATAGCCAGCCAGTTCGCGGCG
TTCAACGCGATAGTCAAGCGCTTTGTAGTCGACGGGGCGCTGGATGAGAT
CAACATCGGCGGTACGGACAAGGAGCGCATCCTGAAAATTTTCCAGTCCG
GTTCCACCGCGTTTTTCGAAATGAACGAAGCGGGGCGAAGGCTGGTGCTG
AACAAGGCATACATCGAGATCAGGGACATGCTGGAGACGAATCTCTTGCA
TCGGTTTCTTCACACGGAAGCATTTAGAACGCTCTTAGCGGGGGCCGACC
CTAATCCCGGACCCTTTCCCGCGCGCGGCGGGCCCTAA
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