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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 44056.XP_009040493.1 |
| ProteomeId | EsuBft411_9 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR008922 |
| Protein domains | IPR002227 |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 8 |
| Max annot lvl | 2759|Eukaryota |
| Length | 196 |
| Hectar predicted targeting category | other localisation |
| Evalue | 5.72e-43 |
| EggNOG OGs | COG0790@1|root,KOG1550@2759|Eukaryota |
| Ec32 ortholog description | Uncharacterised domain, di-copper centre |
| Ec32 ortholog | Ec-20_004210.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | ERAD pathway |
| COG category | T |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0016491 |
| GO | 0005794 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft411_9a-0001 ID=EsuBft411_9a-0001|Name=EsuBft411_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1968bp|location=Sequence derived from alignment at Scaffold_630:906919..911827- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGACGGGGGGTCTTCCGCAGACGGCGTACGCTCCTCCTGTGCTCGACCC TGTAGACTATCCTTCTCGCCGAAGATACGGGGCCGTGGACGATTACACCC GGAGACCGCACCACCGACTCGTTGAGGAGTCGAGCTCGGATCACCAGCCG TCACGGTTACCGATAGCAAGGAAGGACACGGTTGCCGTGTTGTGTGTGTT TGCCCTCCTCGCGGGATACTACGTGGCTAACAGCAGAGAGGGCGACGACG GGGGGAACGAGAGATCACAACTACATGTAGGACGTACAGCCAGATTTGTC GAGGAACACGCAGCAGCAGGAGGAGGAGCGTTATCATCGGGCGAGTCTGG CCAGGCGCAAGCTTTCACCGCTCTCAATTTCTGCCACGTGCGGGACGGAA AGCCGGGGCAGGACTATCCCTTCAAGCTTGTCGAACCCCGCCGCGAGACC ACCCTGGCCGCAAGCTCCACGGGAAGGTTTCACGATGGCCTAGGCTTCCT GGTGAGCCACTCGGTCCTCACCAACACGTTCGAGTACAGCTGGCAGGCCG TGAACCCGAAGCTCACCGTGCCGTACTGGGATTTCACGATCGAGACTTCC ACCTCAACGGAGACGGTGTACGACCCGGCTTCCCCTTACACGAGGACGCC GTTGCTGAACGCTTCCTGGTTCGGCACCGCTGACGTAGACGACGGCATGG TGAAGGATGGTCGACGGGCGAAGTCGGAGATCCCCATGGTCAGAGACAAC AACCCGGGTGGCCTCGAACCGGACGTGTACGGCAAGCTTCAGGCTCCCTG GAACACGAACGACAGAGCATACCTCACGCGTGGGTTGGGTCAGCTGTGCC AGCTAAACACCAACCAGCTCTTACCGTGGCCCACCTGCCAGACGCACTAC GAGCTCACAACGGGGTCCCACACCTTCTACGACTGGGTGTGGAACAGCAT GCACGCCCCCGACGCGCCGCTCCACCTGTGGCTCGGGGGAACCATCGACT GCGCGGGCACGTACGAGGCGATCGCCGAGCTCGTCGGAACTCTATCGCGG AGACGCTCACGCTCCTGGCGATTTACCACCGCAGGAACCTGTACTGCGAC AACGTGTGTCGCTTCTATCCCTCGTGCTCTTGCCCGCATGATAACCGGCC GGTTCATGCAGCTCCTGTCGAGTGGCCAGTGCGGCTGCCACAGTTACGGC CTCGCACAGGGTAGCGACTACAAGATTGTCATTGAGAGTATGGAATACCT GGAAGACCTCATTGGGGAGTTGGATGACACTACGCAAAGGAAGGTCGTGG GGGCGCTCTGCACGGGCATGGTCAACCTCGGGTCCCACTCACAGTCGAGC TCTACATACGACCCGTTGTTCTGGCCGACGCACCCGACCATGGGGCGCCT ATACCAGTTTCCGGTGCTGACCGGATCAATTGACGACTTTTGTTGGACGG ACGCGGACATCAATGTCACCTTCGCCGACGGCACCACCGTCTCGGAGATC ACCAGCGTCTACTCCGACCACTGCGTCGGACATCACGGTAGCGACGTGTT CCCCTACTTTCTGCTTGACACCGACACTGACGGCTTCGAGGTAGCCAACT CCTTGTCGTACGTGTCCGACAAGTTCGAGTGGTCGCACTGCGAGGCAGAC GGTTTCGACTTCAACGACGCCTGGGATGATACCGAGCAGTCTCCCCCCGC CGCTCGGCCCTTTTCGCACCATCAGAAGGCCCATGGGCGCTTGGGGTTGT CTCTAGTCTATACTCAGACTTTCACGAGAAGATGGCTCAGCGCTTGAAGG GGGCATAGAGCTCGGCACCCTCTGCCTCGGGTCATTCCGGGCAACGCCGT ACGTTGTGCGGGGCTCTTGGGCAACCTACCCGTTGTTACTTTCCAGCCCT CTTGTACGCCGCTGGAGAACCATTTAATTTGCGTTCGTTTTTGGGGCCCA ATCGTTGAGACTGACAGG back to topprotein sequence of EsuBft411_9a-0001 >EsuBft411_9 ID=EsuBft411_9|Name=EsuBft411_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=598bp
MTGGLPQTAYAPPVLDPVDYPSRRRYGAVDDYTRRPHHRLVEESSSDHQP SRLPIARKDTVAVLCVFALLAGYYVANSREGDDGGNERSQLHVGRTARFV EEHAAAGGGALSSGESGQAQAFTALNFCHVRDGKPGQDYPFKLVEPRRET TLAASSTGRFHDGLGFLVSHSVLTNTFEYSWQAVNPKLTVPYWDFTIETS TSTETVYDPASPYTRTPLLNASWFGTADVDDGMVKDGRRAKSEIPMVRDN NPGGLEPDVYGKLQAPWNTNDRAYLTRGLGQLCQLNTNQLLPWPTCQTHY ELTTGSHTFYDWVWNSMHAPDAPLHLWLGGTIDCAGTYEAIAELVGTLSR RRSRSWRFTTAGTCTATTCVASIPRALARMITGRFMQLLSSGQCGCHSYG LAQGSDYKIVIESMEYLEDLIGELDDTTQRKVVGALCTGMVNLGSHSQSS STYDPLFWPTHPTMGRLYQFPVLTGSIDDFCWTDADINVTFADGTTVSEI TSVYSDHCVGHHGSDVFPYFLLDTDTDGFEVANSLSYVSDKFEWSHCEAD GFDFNDAWDDTEQSPPAARPFSHHQKAHGRLGLSLVYTQTFTRRWLSA back to topmRNA from alignment at Scaffold_630:906919..911827- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft411_9a-0001 ID=EsuBft411_9a-0001|Name=EsuBft411_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4909bp|location=Sequence derived from alignment at Scaffold_630:906919..911827- (Ectocarpus subulatus male Bft15b) ATGACGGGGGGTCTTCCGCAGACGGCGTACGCTCCTCCTGTGGTCCGTCA
GTGGGCTGCCAGGAGGAGTCGCTCACGTGGGAGCTCCCCTGGGAGCTGGC
GCTGTCGCCCACGATGAGCTGTTGATTGTTGATTTTGGCTACAGTATACG
GTGTGTGGAACTCGAAATCTGTGTTCTTCTGACGTTCTGACTTACCCCGT
GGATGAGTTCGGATATCGGATATCGGTATAGACTATATCCCGATATAAAC
CTTCTCATATGATAATAGATATGGTCATATGGTAGGTGATGTTGAACTGA
TATAATATATATAATCATATATATTTACGATCGTTCAGGAAGTATGTAAT
CATGTAATTTATCACTTAATAAACCGGCCACAAAAACATGTAAAAATATG
TAATGTATTATGGATGCCCTCTACTCTGGGTGAGATCCTACTCTTTATGT
ACTTGTATCTGTGCTCCCTGAATCTCCATATTATCCTGACCTCCACAATA
TGACTATATATTATATACCTTTTTTGTTGTTATGCGCAACACTAATCCCC
AGGCCAAGATAATTCACCCGTTTGGACACTCCTACAAGAAGCCTACAAGC
ACGCATCTCTCTCGTTTTGGACACGGGGAACACGGAAAACGCGGGAGAGT
GCCAGAGTGCCAGATAGGCATCTGATACCCACGTTCTCGTTCCCACGGGA
GCCCGTGGGGACATGGATATCGAAAAAAAATGTAGCTCGACCCTGTAGAC
TATCCTTCTCGCCGAAGATACGGGGCCGTGGACGATTACACCCGGAGACC
GCACCACCGACTCGTTGAGGAGTCGAGCTCGGATCACCAGCCGTCACGGT
TACCGATAGCAAGGAAGGACACGGTTGCCGTGTTGTGTGTGTTTGCCCTC
CTCGCGGGATACTACGTGGCTAACAGCAGAGAGGGCGACGACGGGGGGAA
CGAGAGATCACAACTACATGTAGGACGTACAGCCAGATTTGTCGAGGAAC
ACGCAGCAGCAGGAGGAGGAGCGTTATCATCGGGCGAGTCTGGCCAGGCG
CAAGCTTTCACCGCTCTCAATTTCTGCCACGTGCGGGACGGAAAGCCGGG
GCAGGACTATCCCTTCAAGCTTGTCGAACCCCGCCGCGAGACCACCCTGG
CCGCAAGCTCCACGGGAAGGGTTCCACTATCGCTGGGATATACGACCAAC
ATGTGCAATCATACCCAGCACCAGCAGTGCACCAGAAATAGACGCTTTGG
AGTCAACGAAATATATATGTTACCTGGCTCGGCACTTCATTTTAGGTACC
GTTCCAAGGTGGCTTGGGACGAAAAAGTGGGCGAATGAGTAACATCCTCC
TGCTGCTGTTATTGATGTTGTTTACCTGCGGCGGCTATCGCCCTTCCTTG
TCTGTGTTCAACCGCACGCATTCCTACATGCGAATGGTGATCGCCCCAGC
CTCCGTCCAATCGCATCCATTCCTTTGTCCACGGGTGGGGTGTGGTGCGG
TACCCGCCTGTATTCACTACTTGTTCTCCTTGCAGTTTCACGATGGCCTA
GGCTTCCTGGTGAGCCACTCGGTCCTCACCAACACGTTCGAGTACAGCTG
GCAGGCCGTGAACCCGAAGCTCACCGTGCCGTACTGGGATTTCACGATCG
AGACTTCCACCTCAACGGAGACGGTGTACGACCCGGCTTCCCCTTACACG
AGGACGCCGTTGCTGAACGCTTCCTGGTTCGGCACCGCTGACGTAGACGA
CGGCATGGTGAGATACATTCAAATATGTATTCGAGAAGGCGGCGTTTTCA
CAGACTCGAGCCCTGTGAAAATGGGTATACGGACGTGCTCCTGACTCCCC
TCGCGCGTGTGGAGGCGTGTTTCATGCGCAACAGCGCGGTACATGTTGTT
GTTGCTGCTCCTTGCAAAGGGTACGGCCTGCTCCTGACTCCCCTCGTGTG
TGGGTCGAGGCGTGTTGAATACGCCAAAGGTGAACAGTTGCTGCGGTACT
TGTTGCGGTTGGTTGTTTTTGCCGGAGATCTGCCCGACAATAGTTCAAGT
CGAATCGCTACCACCCGTGTGGGAATGATTCGTTTGTTTCTTCGAACTGG
TCAGCACGTGTGTTTCATCTCCTGCTTTGCGGTGGAAAATTTCTTTGAAA
GTCACAACATTGTCGCATCCACTACATTAGGTGAAGGATGGTCGACGGGC
GAAGTCGGAGATCCCCATGGTCAGAGACAACAACCCGGGTGGCCTCGAAC
CGGACGTGTACGGCAAGCTTCAGGCTCCCTGGAACACGAACGACAGAGCG
TGAGTACCACGCGGTCAGGGGGGTCCCGTCGAATGCATATGGCAGATACG
CATGATTCGCGACGTCCTCCGAGAGAAAGTACGATGTTGTCGGGCGCGTA
CAGCTACTTTGTGTCTTGTGCGACCGGTGCGTCAACACCGCACGCTAAGG
CCGCTCACAAACACACACGTGATTCGCCCTACGCCCCGTTCTGCCGGCAA
TCGCGCGCGCGCCTGGATATACATGCATGTATCACACAGATACCTCACGC
GTGGGTTGGGTCAGCTGTGCCAGCTAAACACCAACCAGCTCTTACCGTGG
CCCACCTGCCAGACGCACTACGAGCTCACAACGGGGTCCCACACCTTCTA
CGACTGGGTGTGGAACAGCATGCACGCCCCCGACGCGCCGCTCCACCTGT
GGCTCGGGGGAACCATCGACTGCGCGGGCACGTACGAGGCGATCGCCGAG
CTCGTCGGAACTCTATCGCGGAGACGCTCACGCTCCTGGCGATTTACCAC
CGCAGGAACCTGTACTGCGACAACGTGTGGTACTACGATGGGCGCGCGGA
CGTAGAGACGAAACCGCCTGAGGTATGCATCTACCAACGGTGGCGTGTGT
GACGGCTCCCCCATGATCCATGTCCGTGCCAACGAATGTCTTCATCGAAC
AAAGATTTCGAGCTCATTTTACGACACGAGGTCAGCTGGGCACAGCCGTT
ACTCGATCTAGCTGTGTTGACGATGGTTTGTGCGTCGATATCTCGCGAAT
CTTTTCCCGATTGTTTGTCGTCGAGCGATGGCTGGTAACACCCTTGAACT
GGTCAGACTCATGAATGTGTGCTTGCTTGACCCGTGGCCAGCTTCTCCTA
GTCGCTTCTATCCCTCGTGCTCTTGCCCGCATGATAACCGGCCGGTTCAT
GCAGCTCCTGTCGAGTGGCCAGTGCGGCTGCCACAGTTACGGCCTCGCAC
AGGGTAGCGACTACAAGATTGTCATTGAGAGTATGGAATACCTGGAAGAC
CTCATTGGGGAGTTGGATGACACTACGCAAAGGAAGGTCGTGGGGGCGCT
CTGCACGGGCATGGTCAACCTCGGGTCCCACTCACAGGTTGTTGCAAGCT
TACTTGCGCGTCTATCGTGAATCGACGGCGCTCAGTACCACTACTCAGAC
CCGCCGCGATCTCCGTAGAGTCCCGACCCTAACGAAGGCATCGCCCACCG
CCGAACGAACGACGTTTGTGTGAGTTCTAACCAAAGCAGCCACCACCATC
GTCTGCGTTCTCGCCTCTTACCCAGTTGTTCGTTGTTCTGTTCTCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCCCCCCCCCCCCCCTCTCCCTCGCCCCCACCCTGGTTTTCGG
CTCTCGTTGTGTTTCTTTAGTCGAGCTCTACATACGACCCGTTGTTCTGG
CCGACGCACCCGACCATGGGGCGCCTATACCAGTTTCCGGTGCTGACCGG
ATCAATTGACGACTTTTGTTGGACGGACGCGGACATCAATGTCACCTTCG
CCGACGGCACCACCGTCTCGGAGATCACCAGCGTCTACTCCGACCACTGC
GTCGGACATCACGGTAGCGACGTGTTCCCCTACTTTCTGCTTGACACCGA
CACTGACGGCTTCGAGGTGTGTGTGTGTGCGGAAGGAAGAACTACGACGA
CACTTCATAAGGGGAGTTCAACCAGTGGCCGTTGTTTACGGCTTTTCACC
ACTGCGGAACATCTGGAGCTGTTTGTTGTGGTGGAATGCTCTGAACTTAT
ATTCGCAGTGCTCTCTAGAAGGTACCTCGAGCAGAGATTGAAATGATGTG
AAGTTTAACCACGATGACGACGACGTTCGTTCGTAGGTGGCGTCTCTTCT
CAACCCACGCGTTTTGTGTCGTCATGGCAGTTATACAAGGAAGACTGATC
GCCTGCCGTCTAATCAGTCGCCGGATTTCTTCAGAGGGGTCACAACCACC
CCACTTACTCGTCCCCCCTCCATCCTGTCAACCTCACCATATCCATGACT
CCAACCCCTACCCCTCGCTACTTACCGTTGTACATGTATGCATACCCATC
CAGGTGAAAACCGGCATCCGAGGGCAGCCCACCTTCAGAAACATGCTCAC
CAACCGGTAAATCCTCGCGGCGCTGGATCCCAGAGCCAACTCCTTGTCGT
ACGTGTCCGACAAGTTCGAGTGGTCGCACTGCGAGGCAGACGGTTTCGAC
TTCAACGACGCCTGGGATGATACCGAGCAGTCTCCCCCCGCCGCTCGGCC
CTTTTCGCACCATCAGAAGGCCCATGGGCGCTTGGGGTTGTCTCTAGTCT
ATACTCAGACTTTCACGAGAAGATGGCTCAGCGCTTGAAGGGGGCATAGA
GCTCGGCACCCTCTGCCTCGGGTCATTCCGGGCAACGCCGTACGTTGTGC
GGGGCTCTTGGGCAACCTACCCGTTGTTACTTTCCAGCCCTCTTGTACGC
CGCTGGAGAACCATTTAATTTGCGTTCGTTTTTGGGGCCCAATCGTTGAG
ACTGACAGG back to topCoding sequence (CDS) from alignment at Scaffold_630:906919..911827- >EsuBft411_9a-0001 ID=EsuBft411_9a-0001|Name=EsuBft411_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1797bp|location=Sequence derived from alignment at Scaffold_630:906919..911827- (Ectocarpus subulatus male Bft15b) ATGACGGGGGGTCTTCCGCAGACGGCGTACGCTCCTCCTGTGCTCGACCC TGTAGACTATCCTTCTCGCCGAAGATACGGGGCCGTGGACGATTACACCC GGAGACCGCACCACCGACTCGTTGAGGAGTCGAGCTCGGATCACCAGCCG TCACGGTTACCGATAGCAAGGAAGGACACGGTTGCCGTGTTGTGTGTGTT TGCCCTCCTCGCGGGATACTACGTGGCTAACAGCAGAGAGGGCGACGACG GGGGGAACGAGAGATCACAACTACATGTAGGACGTACAGCCAGATTTGTC GAGGAACACGCAGCAGCAGGAGGAGGAGCGTTATCATCGGGCGAGTCTGG CCAGGCGCAAGCTTTCACCGCTCTCAATTTCTGCCACGTGCGGGACGGAA AGCCGGGGCAGGACTATCCCTTCAAGCTTGTCGAACCCCGCCGCGAGACC ACCCTGGCCGCAAGCTCCACGGGAAGGTTTCACGATGGCCTAGGCTTCCT GGTGAGCCACTCGGTCCTCACCAACACGTTCGAGTACAGCTGGCAGGCCG TGAACCCGAAGCTCACCGTGCCGTACTGGGATTTCACGATCGAGACTTCC ACCTCAACGGAGACGGTGTACGACCCGGCTTCCCCTTACACGAGGACGCC GTTGCTGAACGCTTCCTGGTTCGGCACCGCTGACGTAGACGACGGCATGG TGAAGGATGGTCGACGGGCGAAGTCGGAGATCCCCATGGTCAGAGACAAC AACCCGGGTGGCCTCGAACCGGACGTGTACGGCAAGCTTCAGGCTCCCTG GAACACGAACGACAGAGCATACCTCACGCGTGGGTTGGGTCAGCTGTGCC AGCTAAACACCAACCAGCTCTTACCGTGGCCCACCTGCCAGACGCACTAC GAGCTCACAACGGGGTCCCACACCTTCTACGACTGGGTGTGGAACAGCAT GCACGCCCCCGACGCGCCGCTCCACCTGTGGCTCGGGGGAACCATCGACT GCGCGGGCACGTACGAGGCGATCGCCGAGCTCGTCGGAACTCTATCGCGG AGACGCTCACGCTCCTGGCGATTTACCACCGCAGGAACCTGTACTGCGAC AACGTGTGTCGCTTCTATCCCTCGTGCTCTTGCCCGCATGATAACCGGCC GGTTCATGCAGCTCCTGTCGAGTGGCCAGTGCGGCTGCCACAGTTACGGC CTCGCACAGGGTAGCGACTACAAGATTGTCATTGAGAGTATGGAATACCT GGAAGACCTCATTGGGGAGTTGGATGACACTACGCAAAGGAAGGTCGTGG GGGCGCTCTGCACGGGCATGGTCAACCTCGGGTCCCACTCACAGTCGAGC TCTACATACGACCCGTTGTTCTGGCCGACGCACCCGACCATGGGGCGCCT ATACCAGTTTCCGGTGCTGACCGGATCAATTGACGACTTTTGTTGGACGG ACGCGGACATCAATGTCACCTTCGCCGACGGCACCACCGTCTCGGAGATC ACCAGCGTCTACTCCGACCACTGCGTCGGACATCACGGTAGCGACGTGTT CCCCTACTTTCTGCTTGACACCGACACTGACGGCTTCGAGGTAGCCAACT CCTTGTCGTACGTGTCCGACAAGTTCGAGTGGTCGCACTGCGAGGCAGAC GGTTTCGACTTCAACGACGCCTGGGATGATACCGAGCAGTCTCCCCCCGC CGCTCGGCCCTTTTCGCACCATCAGAAGGCCCATGGGCGCTTGGGGTTGT CTCTAGTCTATACTCAGACTTTCACGAGAAGATGGCTCAGCGCTTGA back to top
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