EsuBft411_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft411_5a-0001
Unique NameEsuBft411_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:853292..857761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LC24
ProteomeIdEsuBft411_5
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length209
Hectar predicted targeting categoryother localisation
Evalue2.8e-111
EggNOG OGsCOG5354@1|root,KOG2315@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameEIF2A
KEGG koko:K11294,ko:K15026
KEGG Pathwayko05130,map05130
GOsGO:0000049,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005850,GO:0006355,GO:0006357,GO:0006412,GO:0006413,GO:0006417,GO:0006464,GO:0006468,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0006996,GO:0007154,GO:0007165,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0015935,GO:0016043,GO:0016310,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0032268,GO:0032933,GO:0032991,GO:0033554,GO:0034248,GO:0034622,GO:0034641,GO:0034645,GO:0036211,GO:0042254,GO:0042255,GO:0042594,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071501,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:1990928,GO:2000112,GO:2001141
Descriptionribosome binding
COG categoryJ
BRITEko00000,ko00001,ko03009,ko03012,ko03019,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft411_5aEsuBft411_5aEctocarpus subulatus male Bft15bgeneScaffold_630 853292..857761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft411_5a-0001EsuBft411_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 854713..857761 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft411_5a-0001-exonagat-exon-19367Ectocarpus subulatus male Bft15bexonScaffold_630 853292..854778 -
EsuBft411_5a-0001-exonagat-exon-19366Ectocarpus subulatus male Bft15bexonScaffold_630 855532..855762 -
EsuBft411_5a-0001-exonagat-exon-19369Ectocarpus subulatus male Bft15bexonScaffold_630 856310..856405 -
EsuBft411_5a-0001-exonagat-exon-19368Ectocarpus subulatus male Bft15bexonScaffold_630 857096..857217 -
EsuBft411_5a-0001-exonEsuBft411_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 857605..857761 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft411_5a-0001-exonagat-three_prime_utr-15254Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 853292..854712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft411_5a-0001-cdsEsuBft411_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 854713..854778 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft411_5a-0001 ID=EsuBft411_5a-0001|Name=EsuBft411_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2093bp|location=Sequence derived from alignment at Scaffold_630:853292..857761- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTGTTCCGCTACGACGGTTCCGGTCCGGTAGCGAAGAAAGAGGT
GGATGTCCTCTGGGATGCGGTCTGGCAGCCGGCCGCACAAGGGGTGTACC
CGGATAGACCGGCTTCTCCCGGCCGTAAGGGTCCAACGGCAGCGGACGCC
GCGGCTGGGCGAGGACCCACGTTCGGGGAGAAGGCGGCTGTTTACCGCTC
GCCGGGTTCTACGGGGTCACTGGCGGCCCTCATGAGGGCAGAGCGGGGTG
TAGACAAGGCCGGGGCGGGCGGCAAGAAGGTCGGTCGCGTGGACGCGGCA
AGGGCTAGCGGGACGTACATCCCGGGGATGGCACCACCGGAGGCGAACAA
GCCTTCCAAGAATGCCAAGAAGCAGGAAGCGAAGAAGCGCGCGAAGGAGA
AGGCGGAAGCGCAAAAGCAAGTAGAAGCCATCCTCGCGGCTGCCGCCGGG
GGTGACGCGGACGGGGGGGAGAGAGGGGATGGGGGCGGGGAGGCGGTTGC
AGCGGCGGCGGTAGACCCGGCGAAGCGAGCGAAGGCGTTGTCGAAGAAGC
TCAAGAAGCTGGAGACTGTCAAGGCTAAAAAGGAGGCGGGGGAGGCCATC
AACGCGGATCAAAGCGCTCTGTTGGATTCGGAGGCGGGGCTTCGGCAAGA
GCTTGCATCGCTGCAGCTGTGATTGTTCGCGCCTACATTGTAGCTACATG
CGCGATCGACGACACCATCACCTCCTTCGTAGATGATCCGAGAGCCGGGT
GTGTTTTCCGAAGAGAGAAGATCGAAAAAAAACCCTTCTTTCATCTTCCG
GAACGCGTGTCTCGGCATCACTCGCCAACTGCGGCATCACTCGCCAACGA
CGAACCCCATCCTGCTTCCGGGAACACTTCTTTGCGTGCAGCAGTAGGTT
ATTTTTCCCACATGTTGTTGTGTCTCCCGAGGCCTCAACGCCCATGTTGT
TTCTGACCTTGGGAGAGGCTTGCCGTGAAGAGAGGCGGATGGCGTTCGTT
GAGTTCTCACGACGACGAGGCAGACACGATTTTCGAACGATTTTATACGC
GGCAAAGTATTACCGGGTAGCCTGCGGATTGACCTCATTTGCTACCGCCC
GTGCAGGTATCATTTGCGTGGTTGGTGTACTGTGCAAAGGTGGGGTTTAC
TTGATAAAGGCACTCGTGGTCCCGTTCGTTGCCGTCATGTTGTGTCCTGG
TTGGGGATAAGGTTCAGGAGGGTACATTCTGACCTGACGCCCGAGAATGC
ACATGTTGTCCCCCCTTTTTTTGCCTCGTGCTGTCATCGTAGAAGAAAAT
ATGCTGGCGCTGCAATCCTGGGATTTGACGAGGCGTGTGCTCCCCAGTAG
AACGATCAAGGGTGTGGGGGCAAAGCAAAGATGAGGATTGTCTTCGCATT
GTTGAACGAAACACATCTTCCTTCCAGTCGAACAACCATGCATACTACAG
ACGTAATAAACTCGTACAGCAGTAGAGCTTTCAACGTATCGTCTTTCACC
ACATGTATGGGCAGTTCTCTTATTTCTCTTGGGGGATGTTGAAACTGTTA
AGTCCCATGTACAGTTGCAAACACTAAACACCGGTCGCCCCGGTGGGCTA
GTGAGTAGCTTCGCAGTCTGCTAAGGGGCAGGTCATGGGTCCCGGCAGAG
TGAGTTTTTTTCTCACTAAATAAATCCTGGTCTATGCGGAAAAGAGGGTT
TCGTCCTCGACAGACGTTGTGGAGTTTCAACCTTAATGAAGGTGGTCTCC
ACATTACCCCCCCGCTTTTCGAGGCTTCTTCTTGTTTGCTAGGCAAGAGA
AGTCTTCTTCGGGTAACCGGAACCCGACCGGCCGGCGGCGAGTAGAACCA
CCTTTTTTACAACAATCTTCTGTGCGTGTGTGCGGGTGCGCCACTTCCGC
CACGCATTGCCAGAAGTTTCGAGTTCGATAGACAGCAGTGCATCGTTTTT
TGGCCCACCCACCGTTTTGCTTTTTTCCGTACTCCGGAAGAAAATTAGGT
GAGCAGCGGGTTTTGAACCCATCCATGTATTTTGCAACCAAATGCAGACA
CGCTGACATCTCTTCGTCGACGCCATTGTGGAAAAGAGGGTTT
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protein sequence of EsuBft411_5a-0001

>EsuBft411_5 ID=EsuBft411_5|Name=EsuBft411_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=223bp
MQVFRYDGSGPVAKKEVDVLWDAVWQPAAQGVYPDRPASPGRKGPTAADA
AAGRGPTFGEKAAVYRSPGSTGSLAALMRAERGVDKAGAGGKKVGRVDAA
RASGTYIPGMAPPEANKPSKNAKKQEAKKRAKEKAEAQKQVEAILAAAAG
GDADGGERGDGGGEAVAAAAVDPAKRAKALSKKLKKLETVKAKKEAGEAI
NADQSALLDSEAGLRQELASLQL
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mRNA from alignment at Scaffold_630:853292..857761-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft411_5a-0001 ID=EsuBft411_5a-0001|Name=EsuBft411_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4470bp|location=Sequence derived from alignment at Scaffold_630:853292..857761- (Ectocarpus subulatus male Bft15b)
ATGCAGGTGTTCCGCTACGACGGTTCCGGTCCGGTAGCGAAGAAAGAGGT
GGATGTCCTCTGGGATGCGGTCTGGCAGCCGGCCGCACAAGGGGTGTACC
CGGATAGACCGGCTTCTCCCGGCCGTAAGGGTCCAACGGCAGCGGACGCC
GCGGCTGGTGAGCAAAACAAACAACGAGTCGTATCTACGATTTTGATTTT
GTGGAGGTGTTAATCGGAGTATGTGCGTTTGTACCACGTTTTGGTCGGAC
GGCCGAAAACACCTTATTTTTCTCCCAAGTTGTTTTGTGCTAGTGCACGT
GGAGTTTGAGCGGTCGTAGCTGTCACTGAATGAACCATACCACTTGTTTC
TTTGTGGAGAGATGCCGCAGGTCAAATTGTCGTTCACGTCGGGGTGTTTT
GTTCAGGTCGAGGACCCACGTTTCAACCAGAGCACATTAATCAAGTACGA
GCGATAGCTGTCACCGAAGGAACAACACTTCTTGTGGGATTTTGGTGAAG
ATATGGATGCGGCACATCTATTGTCATTCGTGTTTTATGCTCAGGGCGAG
GACCCACGTTCGGGGAGAAGGCGGCTGTTTACCGCTCGCCGGGTTCTACG
GGGTCACTGGCGGCCCTCATGAGGGCAGAGCGGGGTGTAGACAAGGCCGG
GGCGGGCGGCAAGAAGGTGAGGTGCAATGCTTGATTGTCCTCCTAGATGG
TGACCTTTGGTGGTCGTGGATGGTGTTTTTTTTGCGCTGTTTGCCCTCTT
TCTCTGGCCCTATCTCTCGGTATTTGTCTCTTTCTCAGTTGAACTATCTT
TCTGTACTTGTCTCTTTCTCAGTTGTACTATCTTTCGGTCCTTGTCTGTC
TCTCCCTTTCTCTCTCTATCCCTCTCTCACTCGCTCTCTTGTGCAACGCG
TTGTTGTCTGCCTTGTGCTTAGATCCTTCTACCTTCGGCGGTGTCTCGTG
TCTGTTATCTCTTTTGACGACTCATCGATGTGCCTAATGGCCAACTCTTT
GGCAGCTTGTACGATTCTTTTTTGTTTCGTTCCCTTCCACAACACAAAGA
ACATCGATAGAACCGTCTCCCGTCTCCCCCCCGACCGCTGTTATTGGATG
TAGGAATTGCGATGTGTTCACGATTTGTATACCACCGCCTTTATCTGCAC
GCCATTAGCGCGATATGAATGCACCCCCGACCAATTGAATTCCGCCCATG
CACACCAATGTCCGTGGCCGGTTCGCTCAACCTTGCCCAATATAAACAGA
CGTTTCGTAGTTTTGCTCCGCGATTGGTGCCATCTTCTCGTTCTGTATTC
ATGCACGCGGGGGCACACGACATGACAAGACACGAAAACGCCCGATCAAA
ACATAGGTCGGTCGCGTGGACGCGGCAAGGGCTAGCGGGACGTACATCCC
GGGGATGGCACCACCGGAGGCGAACAAGCCTTCCAAGAATGCCAAGAAGC
AGGTACCACGTGTTTGGGTGCACATGGCGTGGCGCAGGAAACAGAAGAAG
CGTTTGAGATCGTTGCGGCAAGGGTAGAGATTTGCGGTTCTCCGTGGAGG
TGACGGTTGAAATGGTCGTGTCTCCCACAACGCTCGTCGAGGATGGTCCC
CTCTGTTCACGTGTCGTGCTCTAAGAAGACTTATGGTGGCATTTGTTTCG
CCTTCGGAAGTCGATTCCAGTTTATTTTGCCGTGACGTTGTGGGTGTATG
GAGGATCACGGATGAAGGCCACGGCCGCACCATCAGATGTAGATACTAGG
ACACTGTCTCCAACGAAACCGATAGAAGAAATGTATTTTGATCTTGTTTT
GCCTCGGTGGCAGTCTGGAATTCGGCCAGGCGGCGTCTCGCTGCCGCGTC
TATTTAGCTCAAAATGCACATAATGCAGCAGCAAATGCACGTAGTGCAGC
AGCAACGCAACATGGTGCCGGTACATCTACCCCGCTGACGGAAGTGTACC
CCCCCGCCCCCGCCCCCCCTTGCCTCTTTTGCTCGGCTGCGTGTACCAGG
AAGCGAAGAAGCGCGCGAAGGAGAAGGCGGAAGCGCAAAAGCAAGTAGAA
GCCATCCTCGCGGCTGCCGCCGGGGGTGACGCGGACGGGGGGGAGAGAGG
GGATGGGGGCGGGGAGGCGGTTGCAGCGGCGGCGGTAGACCCGGCGAAGC
GAGCGAAGGCGTTGTCGAAGAAGCTCAAGAAGCTGGAGACTGTCAAGGCT
AAAAAGGAGGCGGGGGAGGCCATCAACGCGGTAGGTTGATTTGGGCTGTG
CTTTTTTTATTCTGTGGGTATGTAGGCGAGTGCTGTAAAAAACTTAGGGG
TTACTAGCAGCGTTTGAGAAACCGTTATCGAGAACCGCAATTTTGCGTTT
CTCTGGGGAGGTACCAACGTCTGTCAAGGTGTGTGATGGATTACGCAAGT
TTGCCTTGTTGTGCTCCATTTTTTATAGTTTGACTCACCTCCTCGCGAGT
GCAGACATCCTTGTGTCGCCAACAACAGAATAGACACAGGAACTCACAGA
TTCACTGCTGCCGCAATATCACGCATTAGTTTTTCAAGCATGTTGTCGCA
CATACCATATTCAAAGATGTGGAGTAGAAGTGTAAGGCCCAACCTAATCG
GCTGAATGGACTACGGGACAGAGCAGGAGTCCTCGTCCAAACCACCACTT
GAAAAGGAAAATTAATGATCCACGGTGTAGAGACTGAGCGAACCCTGATT
GAGGCATAGTGGCATGTTACTCGTCCTTCCGTCTGCACATGCGTTCATTG
ATGGTGGCCACCCGCCTTTTGGCCCTCGCCCGGTCCCTCGACAAGGGCCT
CTCGTTTGTGACAACTTGCCGAGGACAGAGGTGTAATCTGATTCCCCTGT
TGGTGGTTGTTGTTGCGCTTGGAGCGATTTTGGCCAATCGTTATCCTTAG
CTGCATGTTGTCCCTCGAACCGTCCGCTGCTTGTTGTCGTTGCTGTTGTT
GTCTGTATCTGCTTGCTGTCATCATAATGGCAGGATCAAAGCGCTCTGTT
GGATTCGGAGGCGGGGCTTCGGCAAGAGCTTGCATCGCTGCAGCTGTGAT
TGTTCGCGCCTACATTGTAGCTACATGCGCGATCGACGACACCATCACCT
CCTTCGTAGATGATCCGAGAGCCGGGTGTGTTTTCCGAAGAGAGAAGATC
GAAAAAAAACCCTTCTTTCATCTTCCGGAACGCGTGTCTCGGCATCACTC
GCCAACTGCGGCATCACTCGCCAACGACGAACCCCATCCTGCTTCCGGGA
ACACTTCTTTGCGTGCAGCAGTAGGTTATTTTTCCCACATGTTGTTGTGT
CTCCCGAGGCCTCAACGCCCATGTTGTTTCTGACCTTGGGAGAGGCTTGC
CGTGAAGAGAGGCGGATGGCGTTCGTTGAGTTCTCACGACGACGAGGCAG
ACACGATTTTCGAACGATTTTATACGCGGCAAAGTATTACCGGGTAGCCT
GCGGATTGACCTCATTTGCTACCGCCCGTGCAGGTATCATTTGCGTGGTT
GGTGTACTGTGCAAAGGTGGGGTTTACTTGATAAAGGCACTCGTGGTCCC
GTTCGTTGCCGTCATGTTGTGTCCTGGTTGGGGATAAGGTTCAGGAGGGT
ACATTCTGACCTGACGCCCGAGAATGCACATGTTGTCCCCCCTTTTTTTG
CCTCGTGCTGTCATCGTAGAAGAAAATATGCTGGCGCTGCAATCCTGGGA
TTTGACGAGGCGTGTGCTCCCCAGTAGAACGATCAAGGGTGTGGGGGCAA
AGCAAAGATGAGGATTGTCTTCGCATTGTTGAACGAAACACATCTTCCTT
CCAGTCGAACAACCATGCATACTACAGACGTAATAAACTCGTACAGCAGT
AGAGCTTTCAACGTATCGTCTTTCACCACATGTATGGGCAGTTCTCTTAT
TTCTCTTGGGGGATGTTGAAACTGTTAAGTCCCATGTACAGTTGCAAACA
CTAAACACCGGTCGCCCCGGTGGGCTAGTGAGTAGCTTCGCAGTCTGCTA
AGGGGCAGGTCATGGGTCCCGGCAGAGTGAGTTTTTTTCTCACTAAATAA
ATCCTGGTCTATGCGGAAAAGAGGGTTTCGTCCTCGACAGACGTTGTGGA
GTTTCAACCTTAATGAAGGTGGTCTCCACATTACCCCCCCGCTTTTCGAG
GCTTCTTCTTGTTTGCTAGGCAAGAGAAGTCTTCTTCGGGTAACCGGAAC
CCGACCGGCCGGCGGCGAGTAGAACCACCTTTTTTACAACAATCTTCTGT
GCGTGTGTGCGGGTGCGCCACTTCCGCCACGCATTGCCAGAAGTTTCGAG
TTCGATAGACAGCAGTGCATCGTTTTTTGGCCCACCCACCGTTTTGCTTT
TTTCCGTACTCCGGAAGAAAATTAGGTGAGCAGCGGGTTTTGAACCCATC
CATGTATTTTGCAACCAAATGCAGACACGCTGACATCTCTTCGTCGACGC
CATTGTGGAAAAGAGGGTTT
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Coding sequence (CDS) from alignment at Scaffold_630:853292..857761-

>EsuBft411_5a-0001 ID=EsuBft411_5a-0001|Name=EsuBft411_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=672bp|location=Sequence derived from alignment at Scaffold_630:853292..857761- (Ectocarpus subulatus male Bft15b)
ATGCAGGTGTTCCGCTACGACGGTTCCGGTCCGGTAGCGAAGAAAGAGGT
GGATGTCCTCTGGGATGCGGTCTGGCAGCCGGCCGCACAAGGGGTGTACC
CGGATAGACCGGCTTCTCCCGGCCGTAAGGGTCCAACGGCAGCGGACGCC
GCGGCTGGGCGAGGACCCACGTTCGGGGAGAAGGCGGCTGTTTACCGCTC
GCCGGGTTCTACGGGGTCACTGGCGGCCCTCATGAGGGCAGAGCGGGGTG
TAGACAAGGCCGGGGCGGGCGGCAAGAAGGTCGGTCGCGTGGACGCGGCA
AGGGCTAGCGGGACGTACATCCCGGGGATGGCACCACCGGAGGCGAACAA
GCCTTCCAAGAATGCCAAGAAGCAGGAAGCGAAGAAGCGCGCGAAGGAGA
AGGCGGAAGCGCAAAAGCAAGTAGAAGCCATCCTCGCGGCTGCCGCCGGG
GGTGACGCGGACGGGGGGGAGAGAGGGGATGGGGGCGGGGAGGCGGTTGC
AGCGGCGGCGGTAGACCCGGCGAAGCGAGCGAAGGCGTTGTCGAAGAAGC
TCAAGAAGCTGGAGACTGTCAAGGCTAAAAAGGAGGCGGGGGAGGCCATC
AACGCGGATCAAAGCGCTCTGTTGGATTCGGAGGCGGGGCTTCGGCAAGA
GCTTGCATCGCTGCAGCTGTGA
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