EsuBft411_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft411_3a-0001
Unique NameEsuBft411_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:824809..826958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LC22
ProteomeIdEsuBft411_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length166
Hectar predicted targeting categoryother localisation
Evalue4.26e-93
EggNOG OGsCOG3914@1|root,KOG4626@2759|Eukaryota
Ec32 ortholog descriptionTPR repeat and glycosyl transferase domain containing protein
Ec32 orthologEc-20_004160.2
Date last modified2016-06-14
Date creation2016-06-14
Descriptionprotein N-acetylglucosaminyltransferase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft411_3aEsuBft411_3aEctocarpus subulatus male Bft15bgeneScaffold_630 824809..826958 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft411_3a-0001-exonagat-exon-19363Ectocarpus subulatus male Bft15bexonScaffold_630 824809..826364 -
EsuBft411_3a-0001-exonEsuBft411_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 826848..826958 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft411_3a-0001-exonagat-three_prime_utr-15252Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 824809..825956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft411_3a-0001-cdsEsuBft411_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 825957..826364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft411_3a-0001EsuBft411_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 825957..826958 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft411_3a-0001 ID=EsuBft411_3a-0001|Name=EsuBft411_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1667bp|location=Sequence derived from alignment at Scaffold_630:824809..826958- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATGGGGGCCATCCCGATCACGAGTCGATTCCCGACATCCACCCT
CCCGGAGTTGACAGACCAGTGGGATATGGGACCCCCCGAGGCCCTCGCCA
GCCACCATTTGCTGCCAGAGCATGACATGCCTTGGTTGAAAAGCTGGGCC
AGGGCAGTCGTGCACGCTTCCAAGACCGATACCTCGGAACGAATACGCCA
AAGGGGGGCACCAAAAGCAGACGCCCGATCGGAAATCCCCGAAACGGACG
CCAGCGAAAGGGGTGCCAGAACACACAGACAAGGGGCGACTGCTTACGAT
GATGACCGGGAACACGACGCCTCGCAAGGCTTTGAAAGTGTTGTCGGTCA
AGGACGACGTCGTCGCTTTGGCGGCGTGCAGGACCGGCGGGAAGATATGA
AGGCCGCCGTTAGAGAGCGGTACGCCTTCAGCTCGACGGCAATGCTTTGG
GCGAGGGAGATGACGGGGGACGGCGCCGACACTCGGCCTCAGGGGGGTGC
TCTCCTGTTCAATCCATAGCCTTAGGACTATCCTCGGGCTACATCTATTT
CAGTGCAAGTTTCAGCCGGGAACGCTTGAGATATTTCCAGCTAAGGGCTA
GCGACGGTGTGATCAATGGATTTGGACCGTATCCCCGGTTTCGTTGTCTC
CCCCACATGCTGACAACTGCAATAATGTGCCGTTTTCACTTCACGAACTT
TCAGTTGAGAAAGCTGAAGAATCGGAAGCAACCGCCTCAAGGTGTGGTGT
GTTTTCGAGGTGGTCTTTGTGAGTACGCTATGAGTGGTGTAGGTGGTAGA
AGCTAGCAAACCATGCTATTGGCCAGCTTCGTTGTTGCCACCGTTTTCTT
GATTTGTCTGTATGGATGCCCTCTACTCTGGGTGAGCGGAGAGTCCGGGG
TTGTGGTGGCTATGTCCTGCCACCGGAGGTTGGCTATTTCCTTTGGTGCA
ATGTGGCGAGGAATGCCAAGCGTGACCGAGCGAACTCAGTCAAGCTAGGG
TGGTGCGGAGAGTGGGCGAGCCTTCGTGGACTCCTTTTCCCATTTTCCTA
AAGATCCATCAACCCTTCGCAGCCGTTGGGGGTCATAAGAGTTGGGGACC
CTCGGAGAATAGTAATCCAGTATCACTTGTTCCCTCAGATCCTACACTTT
ATGTACGTGTATCTGTGCTCCCTGAATCTCCATATCCTGACCTCCACATC
TGCACCCTAAATACCGCTGCTCCGGTGACTGCGTGTATGCCCAAAGTTGT
GGTAGGCTTCTATTCGCCTCAACCGTTAGGGATGCCAATCGGGCCGATTT
TGGCGGCAAAAACGTGACCGGTCTATTCGAGGATTTTGGGAAAAAAAGGG
GGGCACGCGGATTGTTGGTTCTCAGCTCAGCTCTTGAAATCATACCGATC
AAAGTATACTTTATCCTCCGTATGTTTGTCAAGAGTCCCTGCGTCCAGGA
AGCGATGTGGCTCTTCATACGTTACACACATCTGGAGACAGGTCATCTAC
ACGTGACTGCGGGTTCGTTTTCTACTGACGTTCAGAGGGCGGGCGAACAA
TACAGAAAACCCTATGAAATTCGGTTTGAAGGCTCACACGCTCGTGGCCG
CGTTTGGTGATCGTAGAACAGCGGATCCGCAGCGCACAGCCTCGGGTTTT
CAGCGACACAACGCAAG
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protein sequence of EsuBft411_3a-0001

>EsuBft411_3 ID=EsuBft411_3|Name=EsuBft411_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=172bp
MAMGAIPITSRFPTSTLPELTDQWDMGPPEALASHHLLPEHDMPWLKSWA
RAVVHASKTDTSERIRQRGAPKADARSEIPETDASERGARTHRQGATAYD
DDREHDASQGFESVVGQGRRRRFGGVQDRREDMKAAVRERYAFSSTAMLW
AREMTGDGADTRPQGGALLFNP
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mRNA from alignment at Scaffold_630:824809..826958-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft411_3a-0001 ID=EsuBft411_3a-0001|Name=EsuBft411_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2150bp|location=Sequence derived from alignment at Scaffold_630:824809..826958- (Ectocarpus subulatus male Bft15b)
ATGGCGATGGGGGCCATCCCGATCACGAGTCGATTCCCGACATCCACCCT
CCCGGAGTTGACAGACCAGTGGGATATGGGACCCCCCGAGGCCCTCGCCA
GCCACCATTTGGTAAGTACTTAGATATGCACACATTTGTAGTTTGGTCCG
ATTTTGTCATTTTCTCGGTCGATCTGATCTGGTGTGCTTCACCAAATGAC
ATCCACATGTAGCACAGATTCGTTGAACAGTCTGGAACATGCACCTGGTC
TTTGTCATGCTTCGTGACGGCCTACGTTCCACTTCCACCAGCACTACCTT
TGCAACTGCCGCTTCGAAACCGCTCCATCAAAATGAAGCCTGTAGGCGCT
CGAACAACTCTACACTGCGTGCAGAAGTCTACCACCAGGTTGTTGCAATC
AGATTGTCCCCGATGTCGTTCCACCCAGAAAAAAGCACCAATAACCTCCA
AAACACCAATCGTCAGCCATTGGCATCTCGTACAGTATATCGTGAGGTAG
GTCCTCATCGTGGGGTATTGTACACCCTGCCCCCCCCTATGCTCTTACTG
TGAACACCCCGCTTGGATGTTATCTTGTTGCTTCCCCTAAACAGCTGCCA
GAGCATGACATGCCTTGGTTGAAAAGCTGGGCCAGGGCAGTCGTGCACGC
TTCCAAGACCGATACCTCGGAACGAATACGCCAAAGGGGGGCACCAAAAG
CAGACGCCCGATCGGAAATCCCCGAAACGGACGCCAGCGAAAGGGGTGCC
AGAACACACAGACAAGGGGCGACTGCTTACGATGATGACCGGGAACACGA
CGCCTCGCAAGGCTTTGAAAGTGTTGTCGGTCAAGGACGACGTCGTCGCT
TTGGCGGCGTGCAGGACCGGCGGGAAGATATGAAGGCCGCCGTTAGAGAG
CGGTACGCCTTCAGCTCGACGGCAATGCTTTGGGCGAGGGAGATGACGGG
GGACGGCGCCGACACTCGGCCTCAGGGGGGTGCTCTCCTGTTCAATCCAT
AGCCTTAGGACTATCCTCGGGCTACATCTATTTCAGTGCAAGTTTCAGCC
GGGAACGCTTGAGATATTTCCAGCTAAGGGCTAGCGACGGTGTGATCAAT
GGATTTGGACCGTATCCCCGGTTTCGTTGTCTCCCCCACATGCTGACAAC
TGCAATAATGTGCCGTTTTCACTTCACGAACTTTCAGTTGAGAAAGCTGA
AGAATCGGAAGCAACCGCCTCAAGGTGTGGTGTGTTTTCGAGGTGGTCTT
TGTGAGTACGCTATGAGTGGTGTAGGTGGTAGAAGCTAGCAAACCATGCT
ATTGGCCAGCTTCGTTGTTGCCACCGTTTTCTTGATTTGTCTGTATGGAT
GCCCTCTACTCTGGGTGAGCGGAGAGTCCGGGGTTGTGGTGGCTATGTCC
TGCCACCGGAGGTTGGCTATTTCCTTTGGTGCAATGTGGCGAGGAATGCC
AAGCGTGACCGAGCGAACTCAGTCAAGCTAGGGTGGTGCGGAGAGTGGGC
GAGCCTTCGTGGACTCCTTTTCCCATTTTCCTAAAGATCCATCAACCCTT
CGCAGCCGTTGGGGGTCATAAGAGTTGGGGACCCTCGGAGAATAGTAATC
CAGTATCACTTGTTCCCTCAGATCCTACACTTTATGTACGTGTATCTGTG
CTCCCTGAATCTCCATATCCTGACCTCCACATCTGCACCCTAAATACCGC
TGCTCCGGTGACTGCGTGTATGCCCAAAGTTGTGGTAGGCTTCTATTCGC
CTCAACCGTTAGGGATGCCAATCGGGCCGATTTTGGCGGCAAAAACGTGA
CCGGTCTATTCGAGGATTTTGGGAAAAAAAGGGGGGCACGCGGATTGTTG
GTTCTCAGCTCAGCTCTTGAAATCATACCGATCAAAGTATACTTTATCCT
CCGTATGTTTGTCAAGAGTCCCTGCGTCCAGGAAGCGATGTGGCTCTTCA
TACGTTACACACATCTGGAGACAGGTCATCTACACGTGACTGCGGGTTCG
TTTTCTACTGACGTTCAGAGGGCGGGCGAACAATACAGAAAACCCTATGA
AATTCGGTTTGAAGGCTCACACGCTCGTGGCCGCGTTTGGTGATCGTAGA
ACAGCGGATCCGCAGCGCACAGCCTCGGGTTTTCAGCGACACAACGCAAG
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Coding sequence (CDS) from alignment at Scaffold_630:824809..826958-

>EsuBft411_3a-0001 ID=EsuBft411_3a-0001|Name=EsuBft411_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=519bp|location=Sequence derived from alignment at Scaffold_630:824809..826958- (Ectocarpus subulatus male Bft15b)
ATGGCGATGGGGGCCATCCCGATCACGAGTCGATTCCCGACATCCACCCT
CCCGGAGTTGACAGACCAGTGGGATATGGGACCCCCCGAGGCCCTCGCCA
GCCACCATTTGCTGCCAGAGCATGACATGCCTTGGTTGAAAAGCTGGGCC
AGGGCAGTCGTGCACGCTTCCAAGACCGATACCTCGGAACGAATACGCCA
AAGGGGGGCACCAAAAGCAGACGCCCGATCGGAAATCCCCGAAACGGACG
CCAGCGAAAGGGGTGCCAGAACACACAGACAAGGGGCGACTGCTTACGAT
GATGACCGGGAACACGACGCCTCGCAAGGCTTTGAAAGTGTTGTCGGTCA
AGGACGACGTCGTCGCTTTGGCGGCGTGCAGGACCGGCGGGAAGATATGA
AGGCCGCCGTTAGAGAGCGGTACGCCTTCAGCTCGACGGCAATGCTTTGG
GCGAGGGAGATGACGGGGGACGGCGCCGACACTCGGCCTCAGGGGGGTGC
TCTCCTGTTCAATCCATAG
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