EsuBft411_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft411_2a-0001
Unique NameEsuBft411_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:819531..823083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIA9
ProteomeIdEsuBft411_2
Protein domainsPS51257
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length250
Hectar predicted targeting categoryother localisation
Evalue4.16e-23
EggNOG OGs2D5KK@1|root,2SYVY@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft411_2aEsuBft411_2aEctocarpus subulatus male Bft15bgeneScaffold_630 819531..823083 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft411_2a-0001-exonEsuBft411_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 819531..820780 +
EsuBft411_2a-0001-exonagat-exon-19362Ectocarpus subulatus male Bft15bexonScaffold_630 820856..820983 +
EsuBft411_2a-0001-exonagat-exon-19361Ectocarpus subulatus male Bft15bexonScaffold_630 821954..823083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft411_2a-0001-cdsEsuBft411_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 819531..820780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft411_2a-0001EsuBft411_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 819531..823083 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft411_2a-0001 ID=EsuBft411_2a-0001|Name=EsuBft411_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2508bp|location=Sequence derived from alignment at Scaffold_630:819531..823083+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGACGAGGCTGGCGGATAGGCTCGGCAGCGAACGCGAAATGAAGAA
ATTGGTTCCCGTCTGCGCCGGTCTTGTTGCGTGTAGCTTCGACAACGTCA
ACTTGGATGTGAACAGGCATTTTGGAGGTAGTAGCCATGTCGATCTAGTG
GCAGCAATTGCCTACCATCATACCTCGGCGTCACGGAGGCAGAGGGCGGA
GTTACCGCAACGACCCCCAAAGTTGAACTTCGTCCGCGATTTCGGGACCA
GCGAACCGAGAATGGTGTTGACCTGGGAGCGCTTCAGGGCACAGGTCCTC
GCGTGTGTGCAGGAACGTGCTGTGGAAGAAGATGGTGATTTTGAGGTGCG
GTTGGCGAGAAGAGTGATCCGTGACGCTGCACCCGAGGAAAGGGTGGGTG
TGGAGGGCCGCCGTATACCTGAGGAAGTCACAACAAAATATCTAGGTGTG
ATTGACGTGACAACCAAGGTGGTGAAGGACATCGTGACCTTCCTGGACGG
CCTCCAACACGTGATCCACATAGGCGCAGAGGGCGGGCGAGGTCGAGCAG
TCGTAGCGGGGGATCAAGAGACATTTACCCTGGTACATAAAGCGAAGAAA
CAATTCGGCGCCAAGTATGACTGGGTGTTGCCGTGGATTGGCGACTGGCA
CCTACTGGAGCACACCCTAGACGTCCTGTTCAGGAAGTGGGGGGGGGGTT
GCATTATTCCACTTGCAAAGGCTGCTGATGCCTACACCAAAAAGTTGGAG
TCCAAGAATTACCACAAGCGGTACTTTGCCTTTAGGAGAATCCTGGAGGC
GCTGTGGGGAGCCTGTGTCGGCGAGATCAAGTCGCAACACAGCACTGACG
GGCCCGTGGGGGCCGAGGAGCTGCTTGGGCGTCTTGTGCAATACCGCGGA
AGCACCAAGCACAAGACATTTGGGCAATGGGCAGAGCTCCTGCTCGATGA
TGGCATGGCGTACCTTGCGGTCTACATCTCAATACGGGTGGGCGACTTTG
ACCTACGCGAGGCGGCAATCCGCCAAATCGCACCGCTGTTCTTGGGCTAC
AAAAAAAAACTGTACCACGCCTTGACCATCCAACACCTCGCCGACATTGT
GAACTTGCGCCCCTCGGAACGGGAGTTTTTGCGCGGGATGTTTAGCTTAT
CGCTCGCTGGGAATCCCGGAAAGAATGTTGGTCTCGACGAGATCCAAGAG
ATGACCATGAACAAGGAGATCAAACAAGCGGCGCATGGGACCGATGTAAG
CATCGGCGTGTACGAACGGAAGCTCCACGCTAGTCACCATCGCACCATAC
TCGTAAAGAAGGTGTTCGACATGCTCACTGCCGCGGGGAGTCCGATCAAG
CTTACCGATGAAAAGGGGCGCCTCTCGTGTGTGATTGACGTGACAACCAA
GGTGGTGAAGGACATCGTGACGTTCCTGGACGGCCTCCAACACGTGATCC
ACATAGGCGCAGAGGGCGGGCGAGCTCGAGCAGTCGTAGCGGGGGATCAA
GAGACATTTACCCTGGTCCATAAAGCGGAGAAACAATTCGGCGCCAAGTA
TGACTGGGTGTTGCCGTGGATTGGCGACTGGCACCTACTGGAGCACACCC
TAGACGTCCTGTTCAGGAAGTGGGGGGGGTTTTGCGTTATTCCACTTACA
AAGGCTGCTGATGCCTACACCAAAAAGTTGGAGTCCAAGAATTACCACAA
GCGGCACTTTGCCTTTACGGGAATCTTGGAGGCGCTGTGGAGAGCCTGTG
TCGGCGAGATCAAGTCGCAACACAGCACTGACGGGCCCATGGGGGCCGAG
GAGCTGCTTGGGCGTCTTGTGCAGTACCGCGGAAGCACCAAGCACAAGAC
ATTTGGGCAATGGGCAGAGCTCCTGCTCGATGATGGCATGGCGTACCTTG
CGGTCTACATCTCAATACGGGTGGGCGACTTTGACCTACGCGAGGCGGCA
ATTCGCCAAATCGCACCGCTGTTCTTGGACTACAATAAAAACCTGTACCA
CGCCTTGACCATCCAACACCTCGCCGACATTGCGAACTTGCGCCCATCGG
AACGGGAGTTTTTGCGCGGGATGTTTAGCTTGTCGCTCGCTGGGAATCCC
GGAAAGAACGTTGGTCTCGACGAGATCCAAGAGATGACCATGAACAAGGA
GATCAAACAAGCGGCGCATGGGACCGATGTAAGGTACCTCCAACGGCTTG
CCCTAACGCTGCAGACTATGAACAACGCAGCTCGTGCATGGAAAGAGTCG
TTTGGCAGCATCGGCGTGTACGAACGGAAGCTCCACGCTAGTCACCATCG
CACCATACTCGTAAAGAAGGTGTTCGACATACTCACCGCCGCGGGGAGTC
CGATCAAGCTTACCGATGAAAAGGGGCGCCTCTCCGTCATATCAGCTGAT
GGCGGTATCGCACTCCCGCACCTCGAGAAAAGAATGCTCAGAGCTCGCGA
AACTTTGACATCTATGATCAGACCTTGGTCATGGAGGAGTTTACTGCCGG
ACAGCTAG
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protein sequence of EsuBft411_2a-0001

>EsuBft411_2 ID=EsuBft411_2|Name=EsuBft411_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=835bp
MRTRLADRLGSEREMKKLVPVCAGLVACSFDNVNLDVNRHFGGSSHVDLV
AAIAYHHTSASRRQRAELPQRPPKLNFVRDFGTSEPRMVLTWERFRAQVL
ACVQERAVEEDGDFEVRLARRVIRDAAPEERVGVEGRRIPEEVTTKYLGV
IDVTTKVVKDIVTFLDGLQHVIHIGAEGGRGRAVVAGDQETFTLVHKAKK
QFGAKYDWVLPWIGDWHLLEHTLDVLFRKWGGGCIIPLAKAADAYTKKLE
SKNYHKRYFAFRRILEALWGACVGEIKSQHSTDGPVGAEELLGRLVQYRG
STKHKTFGQWAELLLDDGMAYLAVYISIRVGDFDLREAAIRQIAPLFLGY
KKKLYHALTIQHLADIVNLRPSEREFLRGMFSLSLAGNPGKNVGLDEIQE
MTMNKEIKQAAHGTDVSIGVYERKLHASHHRTILVKKVFDMLTAAGSPIK
LTDEKGRLSCVIDVTTKVVKDIVTFLDGLQHVIHIGAEGGRARAVVAGDQ
ETFTLVHKAEKQFGAKYDWVLPWIGDWHLLEHTLDVLFRKWGGFCVIPLT
KAADAYTKKLESKNYHKRHFAFTGILEALWRACVGEIKSQHSTDGPMGAE
ELLGRLVQYRGSTKHKTFGQWAELLLDDGMAYLAVYISIRVGDFDLREAA
IRQIAPLFLDYNKNLYHALTIQHLADIANLRPSEREFLRGMFSLSLAGNP
GKNVGLDEIQEMTMNKEIKQAAHGTDVRYLQRLALTLQTMNNAARAWKES
FGSIGVYERKLHASHHRTILVKKVFDILTAAGSPIKLTDEKGRLSVISAD
GGIALPHLEKRMLRARETLTSMIRPWSWRSLLPDS
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mRNA from alignment at Scaffold_630:819531..823083+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft411_2a-0001 ID=EsuBft411_2a-0001|Name=EsuBft411_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3553bp|location=Sequence derived from alignment at Scaffold_630:819531..823083+ (Ectocarpus subulatus male Bft15b)
ATGAGGACGAGGCTGGCGGATAGGCTCGGCAGCGAACGCGAAATGAAGAA ATTGGTTCCCGTCTGCGCCGGTCTTGTTGCGTGTAGCTTCGACAACGTCA ACTTGGATGTGAACAGGCATTTTGGAGGTAGTAGCCATGTCGATCTAGTG GCAGCAATTGCCTACCATCATACCTCGGCGTCACGGAGGCAGAGGGCGGA GTTACCGCAACGACCCCCAAAGTTGAACTTCGTCCGCGATTTCGGGACCA GCGAACCGAGAATGGTGTTGACCTGGGAGCGCTTCAGGGCACAGGTCCTC GCGTGTGTGCAGGAACGTGCTGTGGAAGAAGATGGTGATTTTGAGGTGCG GTTGGCGAGAAGAGTGATCCGTGACGCTGCACCCGAGGAAAGGGTGGGTG TGGAGGGCCGCCGTATACCTGAGGAAGTCACAACAAAATATCTAGGTGTG ATTGACGTGACAACCAAGGTGGTGAAGGACATCGTGACCTTCCTGGACGG CCTCCAACACGTGATCCACATAGGCGCAGAGGGCGGGCGAGGTCGAGCAG TCGTAGCGGGGGATCAAGAGACATTTACCCTGGTACATAAAGCGAAGAAA CAATTCGGCGCCAAGTATGACTGGGTGTTGCCGTGGATTGGCGACTGGCA CCTACTGGAGCACACCCTAGACGTCCTGTTCAGGAAGTGGGGGGGGGGTT GCATTATTCCACTTGCAAAGGCTGCTGATGCCTACACCAAAAAGTTGGAG TCCAAGAATTACCACAAGCGGTACTTTGCCTTTAGGAGAATCCTGGAGGC GCTGTGGGGAGCCTGTGTCGGCGAGATCAAGTCGCAACACAGCACTGACG GGCCCGTGGGGGCCGAGGAGCTGCTTGGGCGTCTTGTGCAATACCGCGGA AGCACCAAGCACAAGACATTTGGGCAATGGGCAGAGCTCCTGCTCGATGA TGGCATGGCGTACCTTGCGGTCTACATCTCAATACGGGTGGGCGACTTTG ACCTACGCGAGGCGGCAATCCGCCAAATCGCACCGCTGTTCTTGGGCTAC AAAAAAAAACTGTACCACGCCTTGACCATCCAACACCTCGCCGACATTGT GAACTTGCGCCCCTCGGAACGGGAGTTTTTGCGCGGGATGTTTAGCTTAT CGCTCGCTGGGAATCCCGGAAAGAATGTTGGTCTCGACGAGATCCAAGAG ATGACCATGAACAAGGAGATCAAACAAGCGGCGCATGGGACCGATGTAAG GTACCTCCAACGGCTTGCCCTAACGCTGCAGAGAATGAACAACGCAGCTC GTGCATAGAAAGAGTCGTTTGGCAGCATCGGCGTGTACGAACGGAAGCTC CACGCTAGTCACCATCGCACCATACTCGTAAAGAAGGTGTTCGACATGCT CACTGCCGCGGGGAGTCCGATCAAGCTTACCGATGAAAAGGGGCGCCTCT CGTGTATTTCCATTCAGAGGATTCATTTTCCCGTCCATTGAACTTGTAAA CAGCTCTCACTTTATTTTTCCAGCGACAACCTATTTGTCGAAGTGCTGTC CACGTTACCAGATCGCTTCAGGGTTCGGGAAATTCCGTTGACCTCGAACT GTTCTTTCCTTCCAGCGCGATCCTCTTGTAAAGTGCTGCCGCACCTCGAG AAAACAATGCTCGGAGCTCGCGACACTTTGACATCTATGTTCAAGACCTT GGTCATGGAGGAGTTTACTGCGGACAGCTAGAGGGCGGCACGAAAGGAAC AGGTCAACCCGTCAAAGGGCGAAAACGAGTTAATTTCGGAGGAGGAACAT GAACAGGAGGAGATCGGCCGGAAATGCCTGATAGCTGGAGTGTTGACGTC GTTCGCGTGTGGCTCGTGGTACAAAAATGCCAGCGTGCTAGGCATTTTCC TGAAGAAGCAAGGGGTAGGCCGGCATGGCTTGGATTTCGTGGCGCACGCT CTCAGAATTACCCGGACCGACAATCAGTTGTGGCGTATGAGGACGAGGCT GGCGGATAGGCTCGGCAGCGAACGCGAAATGAAGAAATTGGTTCCCGTCT TGTTGCGTGTAGCTTCGACAACGTCAACTTGGATGTGAAGAGGCATTTTG GAGGTAGTAGCCATGTCGATCTAGTGGCAGCAATTGCCTACTATCATACC TCGGCGTCACGGAGGCAGAGGGCGGAGTTACCGCAACGACCCCCAAAGTT GAACTTCGTCCGCGATTTCGGGACCAGCGAACCGAGAATGGTGTTGACCT GGGAGCGCTTCAGGGCACAGGTCCTCGCGTGTGTGCAGGAACCTGCTGTG AAAGAAGATGGTGATTTTGAGTTGCGGTTGGCGAGAAGAGTGATCCGTGA CGCTGCACCCGAGAAAAGGGTGGGTGTGGAGGGCCGCCGTATACCGGAGG AAGTCACAACAAAATATCTATAGGTGTGATTGACGTGACAACCAAGGTGG TGAAGGACATCGTGACGTTCCTGGACGGCCTCCAACACGTGATCCACATA GGCGCAGAGGGCGGGCGAGCTCGAGCAGTCGTAGCGGGGGATCAAGAGAC ATTTACCCTGGTCCATAAAGCGGAGAAACAATTCGGCGCCAAGTATGACT GGGTGTTGCCGTGGATTGGCGACTGGCACCTACTGGAGCACACCCTAGAC GTCCTGTTCAGGAAGTGGGGGGGGTTTTGCGTTATTCCACTTACAAAGGC TGCTGATGCCTACACCAAAAAGTTGGAGTCCAAGAATTACCACAAGCGGC ACTTTGCCTTTACGGGAATCTTGGAGGCGCTGTGGAGAGCCTGTGTCGGC GAGATCAAGTCGCAACACAGCACTGACGGGCCCATGGGGGCCGAGGAGCT GCTTGGGCGTCTTGTGCAGTACCGCGGAAGCACCAAGCACAAGACATTTG GGCAATGGGCAGAGCTCCTGCTCGATGATGGCATGGCGTACCTTGCGGTC TACATCTCAATACGGGTGGGCGACTTTGACCTACGCGAGGCGGCAATTCG CCAAATCGCACCGCTGTTCTTGGACTACAATAAAAACCTGTACCACGCCT TGACCATCCAACACCTCGCCGACATTGCGAACTTGCGCCCATCGGAACGG GAGTTTTTGCGCGGGATGTTTAGCTTGTCGCTCGCTGGGAATCCCGGAAA GAACGTTGGTCTCGACGAGATCCAAGAGATGACCATGAACAAGGAGATCA AACAAGCGGCGCATGGGACCGATGTAAGGTACCTCCAACGGCTTGCCCTA ACGCTGCAGACTATGAACAACGCAGCTCGTGCATGGAAAGAGTCGTTTGG CAGCATCGGCGTGTACGAACGGAAGCTCCACGCTAGTCACCATCGCACCA TACTCGTAAAGAAGGTGTTCGACATACTCACCGCCGCGGGGAGTCCGATC AAGCTTACCGATGAAAAGGGGCGCCTCTCCGTCATATCAGCTGATGGCGG TATCGCACTCCCGCACCTCGAGAAAAGAATGCTCAGAGCTCGCGAAACTT TGACATCTATGATCAGACCTTGGTCATGGAGGAGTTTACTGCCGGACAGC TAG
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Coding sequence (CDS) from alignment at Scaffold_630:819531..823083+

>EsuBft411_2a-0001 ID=EsuBft411_2a-0001|Name=EsuBft411_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2508bp|location=Sequence derived from alignment at Scaffold_630:819531..823083+ (Ectocarpus subulatus male Bft15b)
ATGAGGACGAGGCTGGCGGATAGGCTCGGCAGCGAACGCGAAATGAAGAA
ATTGGTTCCCGTCTGCGCCGGTCTTGTTGCGTGTAGCTTCGACAACGTCA
ACTTGGATGTGAACAGGCATTTTGGAGGTAGTAGCCATGTCGATCTAGTG
GCAGCAATTGCCTACCATCATACCTCGGCGTCACGGAGGCAGAGGGCGGA
GTTACCGCAACGACCCCCAAAGTTGAACTTCGTCCGCGATTTCGGGACCA
GCGAACCGAGAATGGTGTTGACCTGGGAGCGCTTCAGGGCACAGGTCCTC
GCGTGTGTGCAGGAACGTGCTGTGGAAGAAGATGGTGATTTTGAGGTGCG
GTTGGCGAGAAGAGTGATCCGTGACGCTGCACCCGAGGAAAGGGTGGGTG
TGGAGGGCCGCCGTATACCTGAGGAAGTCACAACAAAATATCTAGGTGTG
ATTGACGTGACAACCAAGGTGGTGAAGGACATCGTGACCTTCCTGGACGG
CCTCCAACACGTGATCCACATAGGCGCAGAGGGCGGGCGAGGTCGAGCAG
TCGTAGCGGGGGATCAAGAGACATTTACCCTGGTACATAAAGCGAAGAAA
CAATTCGGCGCCAAGTATGACTGGGTGTTGCCGTGGATTGGCGACTGGCA
CCTACTGGAGCACACCCTAGACGTCCTGTTCAGGAAGTGGGGGGGGGGTT
GCATTATTCCACTTGCAAAGGCTGCTGATGCCTACACCAAAAAGTTGGAG
TCCAAGAATTACCACAAGCGGTACTTTGCCTTTAGGAGAATCCTGGAGGC
GCTGTGGGGAGCCTGTGTCGGCGAGATCAAGTCGCAACACAGCACTGACG
GGCCCGTGGGGGCCGAGGAGCTGCTTGGGCGTCTTGTGCAATACCGCGGA
AGCACCAAGCACAAGACATTTGGGCAATGGGCAGAGCTCCTGCTCGATGA
TGGCATGGCGTACCTTGCGGTCTACATCTCAATACGGGTGGGCGACTTTG
ACCTACGCGAGGCGGCAATCCGCCAAATCGCACCGCTGTTCTTGGGCTAC
AAAAAAAAACTGTACCACGCCTTGACCATCCAACACCTCGCCGACATTGT
GAACTTGCGCCCCTCGGAACGGGAGTTTTTGCGCGGGATGTTTAGCTTAT
CGCTCGCTGGGAATCCCGGAAAGAATGTTGGTCTCGACGAGATCCAAGAG
ATGACCATGAACAAGGAGATCAAACAAGCGGCGCATGGGACCGATGTAAG
CATCGGCGTGTACGAACGGAAGCTCCACGCTAGTCACCATCGCACCATAC
TCGTAAAGAAGGTGTTCGACATGCTCACTGCCGCGGGGAGTCCGATCAAG
CTTACCGATGAAAAGGGGCGCCTCTCGTGTGTGATTGACGTGACAACCAA
GGTGGTGAAGGACATCGTGACGTTCCTGGACGGCCTCCAACACGTGATCC
ACATAGGCGCAGAGGGCGGGCGAGCTCGAGCAGTCGTAGCGGGGGATCAA
GAGACATTTACCCTGGTCCATAAAGCGGAGAAACAATTCGGCGCCAAGTA
TGACTGGGTGTTGCCGTGGATTGGCGACTGGCACCTACTGGAGCACACCC
TAGACGTCCTGTTCAGGAAGTGGGGGGGGTTTTGCGTTATTCCACTTACA
AAGGCTGCTGATGCCTACACCAAAAAGTTGGAGTCCAAGAATTACCACAA
GCGGCACTTTGCCTTTACGGGAATCTTGGAGGCGCTGTGGAGAGCCTGTG
TCGGCGAGATCAAGTCGCAACACAGCACTGACGGGCCCATGGGGGCCGAG
GAGCTGCTTGGGCGTCTTGTGCAGTACCGCGGAAGCACCAAGCACAAGAC
ATTTGGGCAATGGGCAGAGCTCCTGCTCGATGATGGCATGGCGTACCTTG
CGGTCTACATCTCAATACGGGTGGGCGACTTTGACCTACGCGAGGCGGCA
ATTCGCCAAATCGCACCGCTGTTCTTGGACTACAATAAAAACCTGTACCA
CGCCTTGACCATCCAACACCTCGCCGACATTGCGAACTTGCGCCCATCGG
AACGGGAGTTTTTGCGCGGGATGTTTAGCTTGTCGCTCGCTGGGAATCCC
GGAAAGAACGTTGGTCTCGACGAGATCCAAGAGATGACCATGAACAAGGA
GATCAAACAAGCGGCGCATGGGACCGATGTAAGGTACCTCCAACGGCTTG
CCCTAACGCTGCAGACTATGAACAACGCAGCTCGTGCATGGAAAGAGTCG
TTTGGCAGCATCGGCGTGTACGAACGGAAGCTCCACGCTAGTCACCATCG
CACCATACTCGTAAAGAAGGTGTTCGACATACTCACCGCCGCGGGGAGTC
CGATCAAGCTTACCGATGAAAAGGGGCGCCTCTCCGTCATATCAGCTGAT
GGCGGTATCGCACTCCCGCACCTCGAGAAAAGAATGCTCAGAGCTCGCGA
AACTTTGACATCTATGATCAGACCTTGGTCATGGAGGAGTTTACTGCCGG
ACAGCTAG
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