EsuBft411_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft411_10a-0001
Unique NameEsuBft411_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:916616..918835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft411_10
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length178
Hectar predicted targeting categoryother localisation
Evalue2.96e-76
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft411_10aEsuBft411_10aEctocarpus subulatus male Bft15bgeneScaffold_630 916616..918835 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft411_10a-0001-exonagat-exon-19411Ectocarpus subulatus male Bft15bexonScaffold_630 916616..917172 -
EsuBft411_10a-0001-exonagat-exon-19410Ectocarpus subulatus male Bft15bexonScaffold_630 917259..917408 -
EsuBft411_10a-0001-exonEsuBft411_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 917649..918471 -
EsuBft411_10a-0001-exonagat-exon-19412Ectocarpus subulatus male Bft15bexonScaffold_630 918578..918835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft411_10a-0001-cdsEsuBft411_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 916616..917172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft411_10a-0001EsuBft411_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 916616..918835 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft411_10a-0001 ID=EsuBft411_10a-0001|Name=EsuBft411_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1788bp|location=Sequence derived from alignment at Scaffold_630:916616..918835- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGCGATTTCAACTCCAGAGTAGGGAAAGCTTCCAGTAGAGGACA
GGCGATCGGGCAGCACGGAGAAGACAAAGTGAATGACAACGGAGTGAGGA
TGCTTGAATTCTTGGGAAGCAACGAACTGATGGTGTTGAACGGTAGGAGG
GAATGCGATAAGCCGGAGATCACCAGGCAACGGGCAGTTTGCAACGAATA
CTCAATCCTCGACTACATCCTGGTAGATAGGGGGAGCAAACAGATCCCAG
AGCTGCACAGCGTTTCGGAGACGTTCGACATTGAGCAGGGTGTCCCACAA
GGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTT
GGAAGTCGTAGAGGCAGCCGGGAAGGGAGTAAAAGTAGGGGACACGAAAA
CGTCGGTTTCAGGAATGCTGTTTGCGGATCATTTTGTCGGTATGTCGGAC
ACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGA
TAAGTGGAGATTGTCTGCCAACGTTAAGAAGAGTGCCGTCATGGTATGCA
ACGAGAACAAGGAGGAACCAGTAGAACATCGGTGGAAGTGGGGGATCGAG
GAGATTGCAACACGGGATGAATTTCAGAAGGGACTGGCTGGTAGTGTAGA
ACCCTTCAGGAAACTGCTGAGAAGCGTCGAAGACGGACAGGTAGACGTAC
AAGCAGCAGGGGACAGGGTGATTGAAGGGTGGGAGTCCATCGTGAACGCA
ACGGCAGAGAGAGTAGTGGGAAAGAAGGTGGTACGATGTGGGGTATCGGT
TAAGTGGTGGGATGACGAGCTGAAAGAAGAAATAGGGGAACGTAGAGAAG
TCTTCAAGCAGTACCTGAGTGAGGCGTCTGAGGAGAGTTGGGAAAAGTAC
AGGGCCAAGAGAAAACAGGTGAAGGGACTAGTGAAAAAGAAGAAAAAGTG
TATTTGGGACGAAGTAGTGCAGAAGGCCAACGGAGGCCTGGAGGGAAACG
TCAAGCAGATGTGGGAAGGGATTAGTGGAATGGTGAAAAAGACCGCGCAA
GGGGGGGACACAGGGGCAGCAAATTTGCGAGGTAGAAAGAGGGCGGGAAA
GCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGGCACCGTAT
GGAGAAATGGGCTGTGGAAACAACTGTCCAAATACGGGGTCAAGGGGAAA
ACGTGGAGAGTGCTGAAGAAGATGACAGAGTGGAAGATGCACCCAACACT
CGCAGACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCG
TAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAG
AAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCAT
CCTAGGATGCTCCAGGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGG
GGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGACATGGCAG
TATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGA
GGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAATGGGTCA
AGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAACG
CTGGAAACGGAGGGTCTAAAGGGGTTCAAGGAGAAGATATCTGCTGCTTG
TACCGAGAGAGAACAAAATCTGAAGAAAGAAACCAAGGATAAGGGGGGTC
TAGATGTGTACGGAATGTTGAAGGAAGGAATAGGGNNN
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protein sequence of EsuBft411_10a-0001

>EsuBft411_10 ID=EsuBft411_10|Name=EsuBft411_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=596bp
MVGDFNSRVGKASSRGQAIGQHGEDKVNDNGVRMLEFLGSNELMVLNGRR
ECDKPEITRQRAVCNEYSILDYILVDRGSKQIPELHSVSETFDIEQGVPQ
GCTLSPTLFQVFINDLLEVVEAAGKGVKVGDTKTSVSGMLFADHFVGMSD
TPEGLQLQIDAAKKFTDKWRLSANVKKSAVMVCNENKEEPVEHRWKWGIE
EIATRDEFQKGLAGSVEPFRKLLRSVEDGQVDVQAAGDRVIEGWESIVNA
TAERVVGKKVVRCGVSVKWWDDELKEEIGERREVFKQYLSEASEESWEKY
RAKRKQVKGLVKKKKKCIWDEVVQKANGGLEGNVKQMWEGISGMVKKTAQ
GGDTGAANLRGRKRAGKPTYCFFLDVKKAYGTVWRNGLWKQLSKYGVKGK
TWRVLKKMTEWKMHPTLADRHLDTRIKLTVLKSVIVPPLEYAGEVWEGNK
KVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSLRSGRDARKLTWQ
YRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDET
LETEGLKGFKEKISAACTEREQNLKKETKDKGGLDVYGMLKEGIGX
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mRNA from alignment at Scaffold_630:916616..918835-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft411_10a-0001 ID=EsuBft411_10a-0001|Name=EsuBft411_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2220bp|location=Sequence derived from alignment at Scaffold_630:916616..918835- (Ectocarpus subulatus male Bft15b)
ATGGTGGGCGATTTCAACTCCAGAGTAGGGAAAGCTTCCAGTAGAGGACA
GGCGATCGGGCAGCACGGAGAAGACAAAGTGAATGACAACGGAGTGAGGA
TGCTTGAATTCTTGGGAAGCAACGAACTGATGGTGTTGAACGGTAGGAGG
GAATGCGATAAGCCGGAGATCACCAGGCAACGGGCAGTTTGCAACGAATA
CTCAATCCTCGACTACATCCTGGTAGATAGGGGGAGCAAACAGATCCCAG
AGCTGCACGTAAGGATAGATACAGGTTCGAATGACCACTTTCTCCTATGG
GCAAACATCGACCGATCTAGAAACATGGAGAGTAAACAGAGGAAAGTGTT
CCGGTGGAAAGTAGAGCGTTTCGGAGACGTTCGACATTGAGCAGGGTGTC
CCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGA
TCTGTTGGAAGTCGTAGAGGCAGCCGGGAAGGGAGTAAAAGTAGGGGACA
CGAAAACGTCGGTTTCAGGAATGCTGTTTGCGGATCATTTTGTCGGTATG
TCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGTT
TACTGATAAGTGGAGATTGTCTGCCAACGTTAAGAAGAGTGCCGTCATGG
TATGCAACGAGAACAAGGAGGAACCAGTAGAACATCGGTGGAAGTGGGGG
ATCGAGGAGATTGCAACACGGGATGAATTTCAGAAGGGACTGGCTGGTAG
TGTAGAACCCTTCAGGAAACTGCTGAGAAGCGTCGAAGACGGACAGGTAG
ACGTACAAGCAGCAGGGGACAGGGTGATTGAAGGGTGGGAGTCCATCGTG
AACGCAACGGCAGAGAGAGTAGTGGGAAAGAAGGTGGTACGATGTGGGGT
ATCGGTTAAGTGGTGGGATGACGAGCTGAAAGAAGAAATAGGGGAACGTA
GAGAAGTCTTCAAGCAGTACCTGAGTGAGGCGTCTGAGGAGAGTTGGGAA
AAGTACAGGGCCAAGAGAAAACAGGTGAAGGGACTAGTGAAAAAGAAGAA
AAAGTGTATTTGGGACGAAGTAGTGCAGAAGGCCAACGGAGGCCTGGAGG
GAAACGTCAAGCAGATGTGGGAAGGGATTAGTGGAATGGTGAAAAAGACC
GCGCAAGGGGGGGACACAGGGGCAGCAAATTTGCGAGGTGTGAACGGTGG
ATTAGTCAGCAGTGTTCTGGAAAAAGGGAAGTTGTAGCAGGAGACTACAA
GAGACTTGGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNACAGGTAGAAAGAGGGCGGGAAAGCCG
ACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGGCACCGTATGGAG
AAATGGGCTGTGGAAACAACTGTCCAAATACGGGGTCAAGGGGAAAACGT
GGAGAGTGCTGAAGAAGATGACAGAGTGTACGAGAAGTGCGGTCATGTTA
GACGGAGAACTGCGTGGAATGCACACATGTCCAAGGTCGGGGAAAAGGGC
AAAGCACGAGCAGGGAAGATGCACCCAACACTCGCAGACCGGCACCTCGA
TACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGCTAG
AGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAGAACTC
GAGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAGGCG
CACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTACGGT
CGGGAAGAGACGCGAGGAAGCTGACATGGCAGTATCGCATGTGCGGGATG
GGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAAGTGGGCAAACAA
AAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACGTAT
GGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTA
AAGGGGTTCAAGGAGAAGATATCTGCTGCTTGTACCGAGAGAGAACAAAA
TCTGAAGAAAGAAACCAAGGATAAGGGGGGTCTAGATGTGTACGGAATGT
TGAAGGAAGGAATAGGGNNN
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Coding sequence (CDS) from alignment at Scaffold_630:916616..918835-

>EsuBft411_10a-0001 ID=EsuBft411_10a-0001|Name=EsuBft411_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1788bp|location=Sequence derived from alignment at Scaffold_630:916616..918835- (Ectocarpus subulatus male Bft15b)
ATGGTGGGCGATTTCAACTCCAGAGTAGGGAAAGCTTCCAGTAGAGGACA
GGCGATCGGGCAGCACGGAGAAGACAAAGTGAATGACAACGGAGTGAGGA
TGCTTGAATTCTTGGGAAGCAACGAACTGATGGTGTTGAACGGTAGGAGG
GAATGCGATAAGCCGGAGATCACCAGGCAACGGGCAGTTTGCAACGAATA
CTCAATCCTCGACTACATCCTGGTAGATAGGGGGAGCAAACAGATCCCAG
AGCTGCACAGCGTTTCGGAGACGTTCGACATTGAGCAGGGTGTCCCACAA
GGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTT
GGAAGTCGTAGAGGCAGCCGGGAAGGGAGTAAAAGTAGGGGACACGAAAA
CGTCGGTTTCAGGAATGCTGTTTGCGGATCATTTTGTCGGTATGTCGGAC
ACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGA
TAAGTGGAGATTGTCTGCCAACGTTAAGAAGAGTGCCGTCATGGTATGCA
ACGAGAACAAGGAGGAACCAGTAGAACATCGGTGGAAGTGGGGGATCGAG
GAGATTGCAACACGGGATGAATTTCAGAAGGGACTGGCTGGTAGTGTAGA
ACCCTTCAGGAAACTGCTGAGAAGCGTCGAAGACGGACAGGTAGACGTAC
AAGCAGCAGGGGACAGGGTGATTGAAGGGTGGGAGTCCATCGTGAACGCA
ACGGCAGAGAGAGTAGTGGGAAAGAAGGTGGTACGATGTGGGGTATCGGT
TAAGTGGTGGGATGACGAGCTGAAAGAAGAAATAGGGGAACGTAGAGAAG
TCTTCAAGCAGTACCTGAGTGAGGCGTCTGAGGAGAGTTGGGAAAAGTAC
AGGGCCAAGAGAAAACAGGTGAAGGGACTAGTGAAAAAGAAGAAAAAGTG
TATTTGGGACGAAGTAGTGCAGAAGGCCAACGGAGGCCTGGAGGGAAACG
TCAAGCAGATGTGGGAAGGGATTAGTGGAATGGTGAAAAAGACCGCGCAA
GGGGGGGACACAGGGGCAGCAAATTTGCGAGGTAGAAAGAGGGCGGGAAA
GCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGGCACCGTAT
GGAGAAATGGGCTGTGGAAACAACTGTCCAAATACGGGGTCAAGGGGAAA
ACGTGGAGAGTGCTGAAGAAGATGACAGAGTGGAAGATGCACCCAACACT
CGCAGACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCG
TAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAG
AAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCAT
CCTAGGATGCTCCAGGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGG
GGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGACATGGCAG
TATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGA
GGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAATGGGTCA
AGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAACG
CTGGAAACGGAGGGTCTAAAGGGGTTCAAGGAGAAGATATCTGCTGCTTG
TACCGAGAGAGAACAAAATCTGAAGAAAGAAACCAAGGATAAGGGGGGTC
TAGATGTGTACGGAATGTTGAAGGAAGGAATAGGGNNN
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