EsuBft409_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft409_6a-0001
Unique NameEsuBft409_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:721534..725965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G925
ProteomeIdEsuBft409_6
Protein domainsIPR002937
Protein domainsSSF54373
Protein domainsPTHR10742
Protein domainsSSF51905
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Noteprobable flavin-containing monoamine oxidase c os:dictyostelium discoideum gn:maoc-1 pe:3 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1957
Hectar predicted targeting categoryother localisation
Evalue8.6e-149
EggNOG OGsCOG1231@1|root,KOG0029@2759|Eukaryota
Ec32 ortholog descriptionAmine oxidase
Ec32 orthologEc-15_002160.1
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00062,RC00160,RC00225,RC00676,RC00807,RC00808,RC01808,RC02226,RC02713
KEGG koko:K00274
KEGG ReactionR02173,R02382,R02529,R02532,R02613,R02908,R02919,R04025,R04300,R04674,R04890,R04893,R04894,R04907,R04908,R08346,R08347,R08348,R11354
KEGG Pathwayko00260,ko00330,ko00340,ko00350,ko00360,ko00380,ko00950,ko00982,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00260,map00330,map00340,map00350,map00360,map00380,map00950,map00982,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG ModuleM00135
EC1.4.3.4
Descriptionoxidoreductase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0016491
GO0055114
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft409_6aEsuBft409_6aEctocarpus subulatus male Bft15bgeneScaffold_242 721534..725965 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft409_6a-0001-exonagat-exon-93937Ectocarpus subulatus male Bft15bexonScaffold_242 721534..721581 +
EsuBft409_6a-0001-exonagat-exon-93936Ectocarpus subulatus male Bft15bexonScaffold_242 721794..721949 +
EsuBft409_6a-0001-exonagat-exon-93939Ectocarpus subulatus male Bft15bexonScaffold_242 722154..722298 +
EsuBft409_6a-0001-exonagat-exon-93933Ectocarpus subulatus male Bft15bexonScaffold_242 722659..722830 +
EsuBft409_6a-0001-exonagat-exon-93934Ectocarpus subulatus male Bft15bexonScaffold_242 723181..723336 +
EsuBft409_6a-0001-exonagat-exon-93932Ectocarpus subulatus male Bft15bexonScaffold_242 723562..723753 +
EsuBft409_6a-0001-exonEsuBft409_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 723987..724145 +
EsuBft409_6a-0001-exonagat-exon-93938Ectocarpus subulatus male Bft15bexonScaffold_242 724359..724515 +
EsuBft409_6a-0001-exonagat-exon-93935Ectocarpus subulatus male Bft15bexonScaffold_242 725194..725965 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft409_6a-0001-exonagat-five_prime_utr-9654Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 721534..721581 +
EsuBft409_6a-0001-exonagat-five_prime_utr-9655Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 721794..721949 +
EsuBft409_6a-0001-exonagat-five_prime_utr-9656Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 722154..722200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft409_6a-0001-cdsEsuBft409_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 722201..722298 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft409_6a-0001-exonagat-three_prime_utr-15176Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 724455..724515 +
EsuBft409_6a-0001-exonagat-three_prime_utr-15177Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 725194..725965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft409_6a-0001EsuBft409_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 722201..724454 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft409_6a-0001 ID=EsuBft409_6a-0001|Name=EsuBft409_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1957bp|location=Sequence derived from alignment at Scaffold_242:721534..725965+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCAATCAAACGTGCACTTGCTTCCCCCAGCCAAACGTGCGCTGGGAGAA
GCGCGTACAGGAATGATCGGCGTTGTTATTGTCGGGGCTGGGTTATCAGG
CCTAGTTAGCGCCCTCCACTTGCTCGACCGTGGAGTGCCAAGCGAAACAA
TTACCATCCTGGATGGGAGGGAACGGGTTGGCGGGAGGCTTGAAGCCCAC
CAAGGTGCTGACATCGGGGGCGCGTGGTGTTGGACCTCTACGCACCACCA
AATGCCCGCTCTGGCGCAGAGATTTGGGGTGGCACATTTCCCGCAGTACG
ACGAAGGTGTCCACGTCATCGACTATGGCAGCCAAAAATTGGTTGCCAGA
ACTCGACAGCCACTGGACTCTCCCAAGGTGCGCTTCCAAGGCGGGGCGGC
GGCCGTGGCGGATGCCCTGGCTAGCCACGTATGCGCCAAGGGGGTAAAGA
TTGTGCTAGGCTGCGTGGTGAACAAAATCTCTACGACCGATGCCGATGCG
GTGCTGGTGGAGGGTGTAGAGCTGGGCGAGCCGAGAAGTTGGAGAGCCGG
TGCCGTACTGCTGGCGATTCCTCCCCGCCTTATCCTGCCGCCGCTAATTT
CGTGGGAGCCAAGGCTGCCGGCTGAGCTCGCCGAGGCTGCGGGGGCGACT
CCAACGTGGATGGCAGACACCACCAAGGTCTTAGTGACGTATCCGCGTCC
GTTTTGGAGGGAGCAGGGCTTAAGCGGGACCGGAATGGGCTACGCGGAGG
GGCCCATCAACCAACTCTACGATTCGTGTGGTCCAGACGGCAGTGAACCC
CACGCGCTTTGCGGGTTTATTTTTGGCGCCGGGGCGGACCTTCCTGGCGA
TGACACCCTAAGGCTGCGGGTGATCGAGCAGCTCGAACGGATGTTCGGCG
CTGAGGCCAGGTCTACTCTGAGCTTCTCCTCTCATCGCTGGGGGGAGCAG
CCCTTGACAAGCGGAAACGGAGGTGGCACAGGCGGAGGACACGACGACAT
GGGAAAATCTGAGCTGAGGATACCGTTCCATCGCCTCAACACCATGCCAA
TATCAATGACGTCAACAGGGCTCGGCTTCACGGGGGGGGGGTCCTCGTAT
TTGGTTATCCGCGGCGGAAACTGATGCGAGGCACGCGGGACTGATGGAGG
GTGCTCTTGCTGCCGGAAAGAGGGTAGCGGAACAGGTAATTCTCGCAGGT
ACCGTTGCGCCGAAGCAAGACGGCGAAGCAGCCAAAGAGGAAGAGGCCAC
GTGTACGGCGTCGGGAGGAAATCCTTTCTAGGCTAACCTATCTCATGCGC
CGTATTGGCCATGAAGCGAAAGACGAGCAGCACCCACGGCCTCCTCTTGG
AAATCGGCTAGTCACTAGGCTGGCTGCTGCTGTTTTCCTTGGATCCAGGC
TAGAAAAATTGACCACATGCATGCATAGTTTGCAGGATTTTTTTTGCTGA
ACGCAATGGGTGTTGAAAGCGCTACATTCGTATTCTGTAGTTCGTGCGTA
CACTTCGAGGAAAGAGAGCGCTGCACTCTTCTCGCGGTAACAACCGTAGG
CAAGCACTGCTGGAGGGGTGGAGGGAGGGGCAACCTTCTGTTTGACCACG
GATTGGAGCAGCTCGTACACGGCAGATGCTGTGGGTGGTGTAAGCGTAAA
GTGACGGGTAAAAAAAAACGGAACGGAGCAGCGTCTCGATCGAACTGCCG
AGAGAAGACTACGGGGGTGTCGCCAAGTTTCCGGAGATGTTTCCTCGGAT
GCATACGTATTTTTGCCGGTTATAGCAATGGAAATGCGATGCAGGTCGTT
GAATGTTCTGGCACAGTCGCTTCACTGTTGCGTGTTGGAAGGTAGAGAGT
CTACAACATTGCGGTTCCAACTGATGGCGATACCAGTGTCCCAAGCGTGG
ATGTTGCCGATGTTTGGCATGCGTACTCATTTGGACACCAGCTCTACGCG
TACCGAT
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protein sequence of EsuBft409_6a-0001

>EsuBft409_6 ID=EsuBft409_6|Name=EsuBft409_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=290bp
MPALAQRFGVAHFPQYDEGVHVIDYGSQKLVARTRQPLDSPKVRFQGGAA
AVADALASHVCAKGVKIVLGCVVNKISTTDADAVLVEGVELGEPRSWRAG
AVLLAIPPRLILPPLISWEPRLPAELAEAAGATPTWMADTTKVLVTYPRP
FWREQGLSGTGMGYAEGPINQLYDSCGPDGSEPHALCGFIFGAGADLPGD
DTLRLRVIEQLERMFGAEARSTLSFSSHRWGEQPLTSGNGGGTGGGHDDM
GKSELRIPFHRLNTMPISMTSTGLGFTGGGSSYLVIRGGN
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mRNA from alignment at Scaffold_242:721534..725965+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft409_6a-0001 ID=EsuBft409_6a-0001|Name=EsuBft409_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4432bp|location=Sequence derived from alignment at Scaffold_242:721534..725965+ (Ectocarpus subulatus male Bft15b)
TTCAATCAAACGTGCACTTGCTTCCCCCAGCCAAACGTGCGCTGGGAGGT
GAGCAGGTGCTACTGTTGTGTGTAACACAGCTGTTGTTGATACCGTTGTG
TTTTTCCTCTGTCTGCTGATCAAGCAGTAGGAAGCTTTGTTTAGTGTGCA
AGTTGCCACCATTTTCCCCCCGCTTTCGCCCGCACCCGCCGCACTCAGTG
CCGCAGTTTGCCACTTGCAGTGCCAGATCTCCCCGCCGCACTCTTTCGCT
CTCTCGTCAGAAGCGCGTACAGGAATGATCGGCGTTGTTATTGTCGGGGC
TGGGTTATCAGGCCTAGTTAGCGCCCTCCACTTGCTCGACCGTGGAGTGC
CAAGCGAAACAATTACCATCCTGGATGGGAGGGAACGGGTTGGCGGGAGG
CTTGAAGCCCACCAAGGTTTGAGTGCTGAAATAGAATAACACACATATTT
ATCCAACGTTGTAGTGGCGTCAGTGCAGCAACAAGGCCGGCTTGTGTTCA
ACCCTTTGCTCCCGAAGGTCCTCTACATGTAGGTACTCTGGGTTCAGCAG
CATCTCTCGTACACCACCAGGAAGAATAACGCCACTTTTCCTTCTTTCCT
CCCTGCACCCTGTTGCCAAGGTGCTGACATCGGGGGCGCGTGGTGTTGGA
CCTCTACGCACCACCAAATGCCCGCTCTGGCGCAGAGATTTGGGGTGGCA
CATTTCCCGCAGTACGACGAAGGTGTCCACGTCATCGACTATGGCAGCCA
AAAATTGGTTGCCAGGTAAAGAACATACTGTAGTCTACGCTTGGCGGGAT
GGCGAGATCCGAGACGAAGCAAAACAAGGCGACATATCTTCGTACCGACG
AATCTAAAACTTGTAGAAAGGATGGGCCCGCTGGTGTTTCGGCACGGCTG
TGCGGGAACAAACAAAAAAAAAGTGCTTCATATCTTCTGTATGTAGTATT
ACTATCATCCCCTTCGCCAAGCCTAGTCATGGTCTATAGTCGGATGTTGT
TGCCCCTTCGACAACCAGGGGCTGCGATTTTCGCCCTACGCGCTCGACGT
ACCTGCTTCTCCACGGTACATAACTAGTCTAGCAACTGTGCTGCAACGCT
CGTTGTCGCGCGCCGTCTGCAACAGAACTCGACAGCCACTGGACTCTCCC
AAGGTGCGCTTCCAAGGCGGGGCGGCGGCCGTGGCGGATGCCCTGGCTAG
CCACGTATGCGCCAAGGGGGTAAAGATTGTGCTAGGCTGCGTGGTGAACA
AAATCTCTACGACCGATGCCGATGCGGTGCTGGTGGAGGGTGTAGAGGTG
AGGGAGCTTTATTTGGGGCGCGCTTCAACCACTGAGCAAGACCTGCCTCG
TTTTTTTGTGAATGCGCGCGCCGCGTGGTTGTTTCTTTGCCGGTGCTCGT
TTCACGCCACAATGCAGCTCAGCTCACGCGTGCCATCAAGAAGACGTCCC
TGACCACTCCCTTTGTCGAGCTCCGCCGGGTACATGATACCGAGTCGAAG
TTTGCACGCGGCGTTTTCGAAAGGTATTTACCTACCCACCATGGTACAAT
ATTCATCTTGCGGAAGTGACGAGAACATCCCGTCCGATAAGAGAGCTAAT
GCCTGCCACTTTCCTTTCTGGCGGGGTCACCGTCGTCGTCTCCAAAGCTG
GGCGAGCCGAGAAGTTGGAGAGCCGGTGCCGTACTGCTGGCGATTCCTCC
CCGCCTTATCCTGCCGCCGCTAATTTCGTGGGAGCCAAGGCTGCCGGCTG
AGCTCGCCGAGGCTGCGGGGGCGACTCCAACGTGGATGGCAGACACCACC
AAGGTGCAACCATATCGCGGTCTGGCCACATTTGCAGCGCTATGCTCGAA
ATGACATGAAGCAAGATCACAAGACGTCTTTTGAACTTTGAACACGGTAG
TCGTGGCCGCGTTCCACGTCCACATGACAACTTGGTTATTGATTGATGGC
ATGTTTTGCTGGACGTACGCGTGTTCCACGTAAGGCCCTCCCAACTTCCG
TATTTTTCTGTCACGTTGATTGCCCTAGGTCTTAGTGACGTATCCGCGTC
CGTTTTGGAGGGAGCAGGGCTTAAGCGGGACCGGAATGGGCTACGCGGAG
GGGCCCATCAACCAACTCTACGATTCGTGTGGTCCAGACGGCAGTGAACC
CCACGCGCTTTGCGGGTTTATTTTTGGCGCCGGGGCGGACCTTCCTGGCG
ATGACACCCTAAGGCTGCGGGTGAGCTCGTGTTTGTTTCGACAAGGGAGC
CATCGATCTGCACTCGTAGTGTGTATACTAGCGCCATGTTATCGGAGCGT
GGTGGGCCACACACTTCGAGTGCGAAGCATCTCGAGGCCGCTGTATCCCA
TGTCGGTCCTCGTACTGATTCGGAATGTCACCATCAATCGGCCAAGCGCA
CCATTTGTGGTGGGCCTTCCTTGGCATCCATACGCGCCTCTTGCCACCGC
CAGGTGATCGAGCAGCTCGAACGGATGTTCGGCGCTGAGGCCAGGTCTAC
TCTGAGCTTCTCCTCTCATCGCTGGGGGGAGCAGCCCTTGACAAGCGGAA
ACGGAGGTGGCACAGGCGGAGGACACGACGACATGGGAAAATCTGAGCTG
AGGATACCGTTCGTGAGTTCAATCAACGCGGTTCGGACCATGGCGTATCT
ATCGCCTGCTTCTTCTAGATCAACACCGAGTGTTTTCTTGGATCTGCTTG
CGGTATCGATCAAATGAGTGGGGTTGACGTGTCATCGGGCGTCCTTTGCC
GCTGGATTATCATTGTCGTCTCTTGTGCCCTCCTGCCCGACCCCGTCGCA
CTGTTGACGGCCAATATCGCCACAGCATCGCCTCAACACCATGCCAATAT
CAATGACGTCAACAGGGCTCGGCTTCACGGGGGGGGGGTCCTCGTATTTG
GTTATCCGCGGCGGAAACTGATGCGAGGCACGCGGGACTGATGGAGGGTG
CTCTTGCTGCCGGAAAGAGGGTAGCGGAACAGGTGCGTCAGCACCAAGCT
TCGCTCGCGGCGGGTTCAGCATGAACAGTTTTTTTGCGTGTCAATCAAGG
TTAAGTGTGCGTGTGTGTGCAGCCTCTTTCCTAAGAGTATTGCAGTCCGA
CAAAACATCGGCGGGATAATACCTCTGTCCAGGCGCTGGTCGCTGCCACT
GAATAGTGGTCCCTCTGTCACCTCCTGGAAGGAATTAGGCCGCCCCTTTG
CAAACGGAAAGAGAAAGAATCCCGGTGCAATAGCATGAACACCGCGGATG
GTTACATCGCAGAGGGGTACCGAAAATAGCCAAGTTATAGGATTGACGCC
AGTGTTGCTGCTGTTCCACACCCTCTCTTTTTTAAGTACACCCTCGTCTT
CTATGCAGATGGATGCTTCTGCTGCTTCTTAACCGTGTCTTGCTTTCCTT
TTCCCCTTCCGTTTTGGCGTTTGGGCAGAGGGGGGCGGGGGATATCGCAC
CTCCTTTACAATGTGTCTCTTCGTTGGGAGCCCAAACAAGCAGCAGTTGT
CCTCGCATGTCCGTCCGCCTCGTGCTGTCTCCCGCCTTCATGTAATCCAG
TACAGAAGTGTGGATGTACCACACACCTCTCTGCCTTGATGAGGGGTCTT
CGAGGTGTGCGAGCAAGCCCAAATTGCGTGACTGACCATCTTTGTCTTTG
TTTTGACCAGGTAATTCTCGCAGGTACCGTTGCGCCGAAGCAAGACGGCG
AAGCAGCCAAAGAGGAAGAGGCCACGTGTACGGCGTCGGGAGGAAATCCT
TTCTAGGCTAACCTATCTCATGCGCCGTATTGGCCATGAAGCGAAAGACG
AGCAGCACCCACGGCCTCCTCTTGGAAATCGGCTAGTCACTAGGCTGGCT
GCTGCTGTTTTCCTTGGATCCAGGCTAGAAAAATTGACCACATGCATGCA
TAGTTTGCAGGATTTTTTTTGCTGAACGCAATGGGTGTTGAAAGCGCTAC
ATTCGTATTCTGTAGTTCGTGCGTACACTTCGAGGAAAGAGAGCGCTGCA
CTCTTCTCGCGGTAACAACCGTAGGCAAGCACTGCTGGAGGGGTGGAGGG
AGGGGCAACCTTCTGTTTGACCACGGATTGGAGCAGCTCGTACACGGCAG
ATGCTGTGGGTGGTGTAAGCGTAAAGTGACGGGTAAAAAAAAACGGAACG
GAGCAGCGTCTCGATCGAACTGCCGAGAGAAGACTACGGGGGTGTCGCCA
AGTTTCCGGAGATGTTTCCTCGGATGCATACGTATTTTTGCCGGTTATAG
CAATGGAAATGCGATGCAGGTCGTTGAATGTTCTGGCACAGTCGCTTCAC
TGTTGCGTGTTGGAAGGTAGAGAGTCTACAACATTGCGGTTCCAACTGAT
GGCGATACCAGTGTCCCAAGCGTGGATGTTGCCGATGTTTGGCATGCGTA
CTCATTTGGACACCAGCTCTACGCGTACCGAT
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Coding sequence (CDS) from alignment at Scaffold_242:721534..725965+

>EsuBft409_6a-0001 ID=EsuBft409_6a-0001|Name=EsuBft409_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=873bp|location=Sequence derived from alignment at Scaffold_242:721534..725965+ (Ectocarpus subulatus male Bft15b)
ATGCCCGCTCTGGCGCAGAGATTTGGGGTGGCACATTTCCCGCAGTACGA
CGAAGGTGTCCACGTCATCGACTATGGCAGCCAAAAATTGGTTGCCAGAA
CTCGACAGCCACTGGACTCTCCCAAGGTGCGCTTCCAAGGCGGGGCGGCG
GCCGTGGCGGATGCCCTGGCTAGCCACGTATGCGCCAAGGGGGTAAAGAT
TGTGCTAGGCTGCGTGGTGAACAAAATCTCTACGACCGATGCCGATGCGG
TGCTGGTGGAGGGTGTAGAGCTGGGCGAGCCGAGAAGTTGGAGAGCCGGT
GCCGTACTGCTGGCGATTCCTCCCCGCCTTATCCTGCCGCCGCTAATTTC
GTGGGAGCCAAGGCTGCCGGCTGAGCTCGCCGAGGCTGCGGGGGCGACTC
CAACGTGGATGGCAGACACCACCAAGGTCTTAGTGACGTATCCGCGTCCG
TTTTGGAGGGAGCAGGGCTTAAGCGGGACCGGAATGGGCTACGCGGAGGG
GCCCATCAACCAACTCTACGATTCGTGTGGTCCAGACGGCAGTGAACCCC
ACGCGCTTTGCGGGTTTATTTTTGGCGCCGGGGCGGACCTTCCTGGCGAT
GACACCCTAAGGCTGCGGGTGATCGAGCAGCTCGAACGGATGTTCGGCGC
TGAGGCCAGGTCTACTCTGAGCTTCTCCTCTCATCGCTGGGGGGAGCAGC
CCTTGACAAGCGGAAACGGAGGTGGCACAGGCGGAGGACACGACGACATG
GGAAAATCTGAGCTGAGGATACCGTTCCATCGCCTCAACACCATGCCAAT
ATCAATGACGTCAACAGGGCTCGGCTTCACGGGGGGGGGGTCCTCGTATT
TGGTTATCCGCGGCGGAAACTGA
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