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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7G927 |
| ProteomeId | EsuBft409_4 |
| Protein domains | SSF58038 |
| Protein domains | G3DSA |
| Protein domains | IPR011012 |
| Protein domains | IPR010908 |
| Protein domains | PTHR21136 |
| Protein domains | IPR001388 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | vamp-like protein ykt61 os:arabidopsis thaliana gn:ykt61 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1589 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.46e-137 |
| EggNOG OGs | COG5143@1|root,KOG0861@2759|Eukaryota |
| Ec32 ortholog description | Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) |
| Ec32 ortholog | Ec-15_002130.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Preferred name | YKT6 |
| KEGG rclass | RC00438,RC00439,RC00603,RC00604 |
| KEGG ko | ko:K01623,ko:K08516,ko:K18999 |
| KEGG Reaction | R01068,R01070,R01829,R02568 |
| KEGG Pathway | ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04130,ko04138,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04130,map04138 |
| KEGG Module | M00001,M00003,M00165,M00167 |
| GOs | GO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005783,GO:0005793,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007033,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016409,GO:0016417,GO:0016482,GO:0016740,GO:0016746,GO:0016747,GO:0019706,GO:0019707,GO:0022406,GO:0030133,GO:0030425,GO:0030659,GO:0031090,GO:0031201,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0033036,GO:0033116,GO:0034613,GO:0036477,GO:0042144,GO:0042147,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090174,GO:0097440,GO:0097441,GO:0097447,GO:0097458,GO:0097576,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0140096 |
| EC | 3.1.3.16,4.1.2.13 |
| Description | SNAP receptor activity |
| COG category | U |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01009,ko03021,ko03036,ko04131,ko04147 |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0010468 |
| GO | 0019706 |
| GO | 0031201 |
| GO | 0006906 |
| GO | 0005484 |
| GO | 0004571 |
| GO | 0006904 |
| GO | 0005794 |
| GO | 0006903 |
| GO | 0070062 |
| GO | 0006888 |
| GO | 0005887 |
| GO | 0000324 |
| EC | 2.3.1.225 |
| GO | 0005739 |
| GO | 0006891 |
| GO | 0005829 |
| GO | 0042144 |
| GO | 0015012 |
| GO | 0015031 |
| GO | 0042147 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft409_4a-0001 ID=EsuBft409_4a-0001|Name=EsuBft409_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1589bp|location=Sequence derived from alignment at Scaffold_242:737627..742822+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ACCGCGAGAGAGAGGAAACACATCACACAAATACCACCACCAGCTAGCAG GATGAAGGTGGTTTCTATCTGCACGATGCGGTACAACCGCGACACAGCGG AGCCTGTGATGTTGTCACAGGTCAACGAGCTGTCATCCTACGGCTTCTTT CAGCGCCAGGGAATTAAGGAGATGTGCACTTTCTTCAGCAAGACCATCGT TAAGCGCACGCAACCGGGGCAGCGCCAGAGCGTACAGCACGAAGACTACA ACGTGCACGTGTACATGCGGCAAGACGGATTGGCGGGGACGGTAACGGCA GATCTCGAGTACCCACCACGAGTCGCGTTCGTGCTGCTCACGCAGCTGTT GGAGCAGTACTCGGAGCAGGTCTCGTGGCAGTCCGAGATCAGACACGAGG CCATTCGATTCCCTCCGATGGAGAAAATGATTGTGGACTACCAGGACCCG GCGAAGGCGGACAAGATCACCAAGATTCAGCGCGATTTGGACGAGACGAC CGAAGTGCTGCACCGAACCATCGACAACGTGTTGGAGAGAGGGGTAAGGC TGGATGAGCTCGTGGACCGATCCGACGACTTGAGCCGACAATCCAAGATG TTCTACAAGCAAGCGAGGAAAACGAACAGCTGCTGCGTGGTGAGCTGATT GGGAAGGGCATTGAGCGGGTGGCGGGGAAGGAGCTCCTCCGCGCGAAGCC TTGAAGCCTTGGACAAGTCGTCGCAACGAGAAAGAAAGGGTGGCCACGAT CGTTTGTCTTTTTTTGTCTTTATTTTTTTTCGTGGCAGTCCCGTCCTGGA GCCTGGGTGTGCACTTTTATCGGGTTCAGCGATTGTACATTGGTAAAAGA CGTTCAAGTTGAGCTCGCGGGGTTACATTGGGTCTGCTTTTTTGTGTTTG TTTCCCCCAAAGGTATCTAGCGCCCTCGCCGCCACCACGGCGGCCGCCGC CGGGCTACCGCCATACTTGTTGTTGTGCTGAACTTGTGAGCGTTTTTTTT TCGACTTTGTGGCCTGGAGTCGGTGTTCCGTAGCTGCGTGAAGGGTTGGG GGTTGTTTTGGCCTCTTGTCTTGCCTTCCAGCACAAGAAGAGAAGTCAGC TTGAACGTTGGTGTGTGTATAGTACTCAACCCGGTGTGTCGGAAGCGCTT TTTGTATTTGAAAAATAGTATGGCGCTTCGTTTGTCAGAGACCCGTCCGC ACTCTTCGTGAAGCGGTGCGCGAGCTGTGCGGTAGGTCCCGTTGTAGTCC GCGAGAAAGGTCTTCACCGCGGTGCCCTTGTAGGATAACAAAACTAGACC TAGCAGGCAACCCGCGGCTTATCGGAGCCCAGACGGTGAGTAGGGACGCC TCTTTTGCCAAGGCTGTTTGTTTTGGCCATACTGCTGCAATGTTGAGGTT TAGGGTATATAATTAGGAAATGAGTGCAGCGATCGCACGGGGGGGTGATG ACCCCTTGTCTTTCTGTACGATAACAACCTCTGCAAATCCTGGGTCAGGA CAAGGGCATTGTTCCAGGAGACTCATGTCCGCCGGGGATGAAACCTTCCA AAAGGGAAGCCTCAGGAGTTGCTCCGAAACCACCCCTGT back to topprotein sequence of EsuBft409_4a-0001 >EsuBft409_4 ID=EsuBft409_4|Name=EsuBft409_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=198bp
MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIV KRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLL EQYSEQVSWQSEIRHEAIRFPPMEKMIVDYQDPAKADKITKIQRDLDETT EVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS back to topmRNA from alignment at Scaffold_242:737627..742822+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft409_4a-0001 ID=EsuBft409_4a-0001|Name=EsuBft409_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5196bp|location=Sequence derived from alignment at Scaffold_242:737627..742822+ (Ectocarpus subulatus male Bft15b) ACCGCGAGAGAGAGGAAACACATCACACAAATACCACCACCAGCTAGCAG
GATGAAGGTGGTTTCTATCTGCACGATGCGGTACAACCGCGACACAGCGG
AGCCTGTGATGTTGTCACAGGTCAACGAGCTGTCATCCTACGGCTTCTTT
CAGCGCCAGGGGTGAGAGATGTATCTCCTTTGGAAATAGCGCCGACGGAA
GACCAGCTGCAGTGTACGATACCATGGTATAGACAGCAAGATGCTTGTCT
CGTGCCGCCGTGGATGCCTGACTTCTCCAAAGCGTGCGGCGGCAGTGACA
GGAGCTGGTCTAGAGTTGCAGAAGGCAGCAGTCGTGATAAAGTTGAGCAA
TCTCGGAGTCTCTGCATATTGAACAACTAGCATAGCAGACAATCGGAGTA
CTGTAAAATTCTTCCTCTGTGTAGCCAGTCGACGAGCAATTGGCGTTCTA
TAATGTGAAGACAACACCAACAACAACCTCCAGAGTTCGACCTCTGCCTA
TCAAGTCACCGCTCGTTGTGCCTCACCTGCCCGACCTCTGCCTACCCTCA
GAGAAGCTGCGCCGCCCGATCGTACATGCGGGTTGTCTGTGTGTACAATT
ATTGCACATAGGTTTTGTGCGTGAAGAGCGTAAGGATACACCAGCAGAGA
AGTCTCCGGAAACGCTCCGTGCTGCTGTCGAGTACTAAAGCTCGTGTCCG
TACGCGTATGCCATGTGGAGAAGCACGTTGTGTAGTCCCACGAAGCAGCA
CCTGTTGTTGGTACCCTAGTGAATTGTTGCGGTCTTCGTTGTGTCCTCCA
ATCAAGCATCTTCTCGTCCCTGGTAGTACTTTAGTTAGACTACTCTTCAC
CTTGAGGGAAGAAACGACTTGTAGTTGACAACAGCAGTGGACTTCCAGAT
ATTGTACAACGTATAGTCTACGTTGTCTCGATTTACCCAACACCAGGCAC
ATCCCAGACGACGACCAAAGAGTGGACCATGGCAATTCTGAAGTTATACT
AACGTAGGCGTGGTCCACCATCCCGCATGTAGCCCCGGAACACTGAAAAA
CAAGGGTTTTGCTCAAGCAGTCATTCGTTGGCAGGTAGATATGTTCTTGC
ATGCGTTCAGAAACATTTACTTTTGTACTCGTGGATACCTTCTCGGCATC
TTAGATAACATCTCGCGAGTGCAAGAACCAAACGCCGGTCGCCTTCTGCC
TCACGCACCTGCTTGCTATTGCTACGGGGCGTCGCAGAATTAAGGAGATG
TGCACTTTCTTCAGCAAGACCATCGTTAAGCGCACGCAACCGGGGCAGCG
CCAGAGCGTACAGCACGAAGGTGGGATGAACTGCCACCACCGCGCGCTTG
TGACATCGAGCTGTACAACTGCTGTTAGGGCATGAGGGTTGTTTCTGCGG
CATGTCTTGTAAGCTTGTGGGCTTCGGTCCTAAAGTTCACACCCTATAGG
ATATCCGCTGAACATTGGATAGGTGAATCGCCCTAAATACGTAGTTACTT
ATGAACTGCCATGTTAGAATATCCACCTGTGTACTAGTAGATTATTCTCC
AAAGTGTATCACACACGAAGCGGCGGGTTAGTTGTGTTTGTCGCGCCTGT
TGTGTACAAGCGCGCAAAGATCAAGTCCCTTGCGGTGCTGGAAGAACAAT
CGTGCCTGCCGAATGGGAAACGTTTGGGTAGTCGGGATGCCCAATCGACC
GATGGCATATCTGGTTTGGCACAGCAAACGCAACGACGGTGACCAGCTTC
TGGTTCGCCCTCGTGAAAGGTAGCCTGAGCCGGCGAAAACCCGGCATAAT
ATTCCGTCCCGACGTTGCAGGGATGCGAGGTCAATGGTCCACCATGCGTT
TACATAAAGGTACACCCCCTCCCCCGGGTGCTTCGCACATGTCGCCGTCA
CGCAATAGCCGAAGAATCCGATAGACAGGATATGCAGATGTAGGGTGGCA
AATTGCGCCAAACGAACCCGATCTTTTTGCCAGCGACTGACGCACTCCAG
GCATCGCAGCGGCAAACAGGCAGCGAATGACCCCCCCCCCCCCGGTTCCG
GGATTGGGTTTTTGTCGCTTGGCAACGACGTTGTAAAACAAGCCAATCCA
CTTCGTGAGCTCGGCAACCAGGTTACCGTTTCTTTTTTTTTGGCGGTAAC
CATGATGGTGGTCGAGCAGATCATGTTATGCGGGGTGGAGACGCCTCACT
CCGCGCAAGGGGGATGATCGCACCACGTCGTGTTGAAATGGTCAAGCACC
CTCGAGGCAGTTACACCTTGCTTACAACTGTCTCAGGAAGTGAAAGCACC
AGAAAATAAATGAAGTCATACGCAGCTGTCATCCGTACGCAAGGAAGTAA
GNCGTCCCCCCCGGTTCCCCCCCCACGATGATGTGACACCGGCATAACAC
TACCATCGGCGATCTACTGCCACTGCTCGCGTAGACTACAACGTGCACGT
GTACATGCGGCAAGACGGATTGGCGGGGACGGTAACGGCAGATCTCGAGT
ACCCACCACGAGTCGCGTTCGTGCTGCTCACGCAGGTGAGCGGAGTTGGT
GTATGTGTGTGTGTTTTCTTAATTTACATCGGCCGCGCTAGCCGACTGAT
CAATGAAAAGACGTCAGTGTTGTAGCGGGATAACACACAAGAACGTTTTC
TAATCAAAGAGTACGGGTTATACCGACAGTTGTGTGTGTGTGTGTTTTAT
TTTGCTGTGTACCGCCGTGTGTAGGTAATGCCTTCCCAGGCCAGCAAACA
TTGTTAGCGATGAAAAGGCTTGACTGGGGGGCACGAGTTCGAGTTTTGGG
ACGACTGAACAAGATACAATGCGTGAGTGAGTTGTCTGCTTGTGTGAGTA
TGAAGATTGATTACGCTCGGTTTTACTCGACAGCTCCACCCGAAGGCCTT
CCCTTGGAAGTCGTAGCGGTGGCAGCAAGAGCCCAACGTCTAGGTTCCTC
TGTGACACGCATTGGTTCTCCGGACACGTCATCAAATGAGCCGCGCCCCG
TTCTCCCTCTCGCGTGGGTGCTCTTGACACCCCCACTATGTTGATATTAT
ATTTTCTCCTCAGCTGTTGGAGCAGTACTCGGAGCAGGTCTCGTGGCAGT
CCGAGATCAGACACGAGGCCATTCGATTCCCTCCGATGGAGAAAATGATT
GTGGACTACCAGGTAGGAAGAGCAATGTGATTGACACCACAGACGATGAA
CGGCAATTGGCCTTGTATCTGGGCTTCTGTATCTAGTTCTTTGACTTCGC
CCGTACCCTTGCGGGCGCACGGGAAAAAAACGCCGTACTACCAGCGGACC
GTGGCCTGCTCTTGTGCGGCCGTTCAGTACAGTAACCCCACCCCGCACGC
TCTCGTCCCTGGTGACGATTAACAGCAGTACGGTAGTAGTGAGTTCACGA
TCTTGCTTATTCCCGACGCGGTGCCTTCGGCGCTAATATGCTGTATATGG
GAACGGTGTGTCGGGGTCGCTTTCGTTGAGATATGTTTGTTCAGTGGCCC
TTGACATGGTTAATGTTCTGTTTCCACTCGTGAGCTGTCAAGACAACCGC
ACTGATTGGGGGGGGGGGCGATTTGTTCTGAGATGATGTGGTTCTGTCCG
TCCGCTGATGTTTTTGTTCAAACATGCTAACAGGACCCGGCGAAGGCGGA
CAAGATCACCAAGATTCAGCGCGATTTGGACGAGACGACCGAAGTGCTGG
TGAGAAGACGAGCTTGCCTTCATGGCCACTACATACTATCTCTTCTACCC
CCCACAATATCGTTCGTCGTGTCTAGGGTCAACACTGCGTGCTGGCGGCG
CAAGACCGTTTTGTGTCACAGAACATCTGCTTCGATTGGAAGCGTGTATT
GCATTGTGGTCATAACTCCCGGTTCGAGCCACAGAGGGGTAAATGAGATG
GTTCGCACGGATTTCGGTCTCCACTGATCAAAGAGCGTGGCCGGACCGCA
CAGTTTCCCTGGTCGACACGGAACTTGCCAGTAGCTTTGTTCACTCCTGG
TGGAACGTGAAAATGGAATTGAAAGTGAGTAGACCCATGACGAAGACGCC
CCCCGTAACTGACGTTCACGCTCGCGTTCGTGGTCGCCGTAACAATCTTG
CCGGCTGTGAACGGCAGCACCGAACCATCGACAACGTGTTGGAGAGAGGG
GTAAGGCTGGATGAGCTCGTGGACCGATCCGACGACTTGAGCCGACAATC
CAAGATGTTCTACAAGCAAGCGAGGAAAACGAACAGCTGCTGCGTGGTGA
GCTGATTGGGAAGGGCATTGAGCGGGTGGCGGGGAAGGAGCTCCTCCGCG
CGAAGCCTTGAAGCCTTGGACAAGTCGTCGCAACGAGAAAGAAAGGGTGG
CCACGATCGTTTGTCTTTTTTTGTCTTTATTTTTTTTCGTGGCAGTCCCG
TCCTGGAGCCTGGGTGTGCACTTTTATCGGGTTCAGCGATTGTACATTGG
TAAAAGACGTTCAAGTTGAGCTCGCGGGGTTACATTGGGTCTGCTTTTTT
GTGTTTGTTTCCCCCAAAGGTATCTAGCGCCCTCGCCGCCACCACGGCGG
CCGCCGCCGGGCTACCGCCATACTTGTTGTTGTGCTGAACTTGTGAGCGT
TTTTTTTTCGACTTTGTGGCCTGGAGTCGGTGTTCCGTAGCTGCGTGAAG
GGTTGGGGGTTGTTTTGGCCTCTTGTCTTGCCTTCCAGCACAAGAAGAGA
AGTCAGCTTGAACGTTGGTGTGTGTATAGTACTCAACCCGGTGTGTCGGA
AGCGCTTTTTGTATTTGAAAAATAGTATGGCGCTTCGTTTGTCAGAGACC
CGTCCGCACTCTTCGTGAAGCGGTGCGCGAGCTGTGCGGTAGGTCCCGTT
GTAGTCCGCGAGAAAGGTCTTCACCGCGGTGCCCTTGTAGGATAACAAAA
CTAGACCTAGCAGGCAACCCGCGGCTTATCGGAGCCCAGACGGTGAGTAG
GGACGCCTCTTTTGCCAAGGCTGTTTGTTTTGGCCATACTGCTGCAATGT
TGAGGTTTAGGGTATATAATTAGGAAATGAGTGCAGCGATCGCACGGGGG
GGTGATGACCCCTTGTCTTTCTGTACGATAACAACCTCTGCAAATCCTGG
GTCAGGACAAGGGCATTGTTCCAGGAGACTCATGTCCGCCGGGGATGAAA
CCTTCCAAAAGGGAAGCCTCAGGAGTTGCTCCGAAACCACCCCTGT back to topCoding sequence (CDS) from alignment at Scaffold_242:737627..742822+ >EsuBft409_4a-0001 ID=EsuBft409_4a-0001|Name=EsuBft409_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=597bp|location=Sequence derived from alignment at Scaffold_242:737627..742822+ (Ectocarpus subulatus male Bft15b) ATGAAGGTGGTTTCTATCTGCACGATGCGGTACAACCGCGACACAGCGGA GCCTGTGATGTTGTCACAGGTCAACGAGCTGTCATCCTACGGCTTCTTTC AGCGCCAGGGAATTAAGGAGATGTGCACTTTCTTCAGCAAGACCATCGTT AAGCGCACGCAACCGGGGCAGCGCCAGAGCGTACAGCACGAAGACTACAA CGTGCACGTGTACATGCGGCAAGACGGATTGGCGGGGACGGTAACGGCAG ATCTCGAGTACCCACCACGAGTCGCGTTCGTGCTGCTCACGCAGCTGTTG GAGCAGTACTCGGAGCAGGTCTCGTGGCAGTCCGAGATCAGACACGAGGC CATTCGATTCCCTCCGATGGAGAAAATGATTGTGGACTACCAGGACCCGG CGAAGGCGGACAAGATCACCAAGATTCAGCGCGATTTGGACGAGACGACC GAAGTGCTGCACCGAACCATCGACAACGTGTTGGAGAGAGGGGTAAGGCT GGATGAGCTCGTGGACCGATCCGACGACTTGAGCCGACAATCCAAGATGT TCTACAAGCAAGCGAGGAAAACGAACAGCTGCTGCGTGGTGAGCTGA back to top
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