EsuBft409_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft409_3a-0001
Unique Name	EsuBft409_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:753305..754945 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft409_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	164
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-15_002110.1
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft409_3a	EsuBft409_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 753305..754945 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft409_3a-0001-exon	EsuBft409_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 753305..754945 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft409_3a-0001-cds	EsuBft409_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 753305..754945 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft409_3a-0001	EsuBft409_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 753305..754945 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:753305..754945+
coding sequence from alignment at Scaffold_242:753305..754945+

spliced messenger RNA

>EsuBft409_3a-0001 ID=EsuBft409_3a-0001|Name=EsuBft409_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1641bp|location=Sequence derived from alignment at Scaffold_242:753305..754945+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGATCTCGGGTCACAAGAACAAGCCTCTTTTCAGTCCTGCCGCCGG
TTCCCAGAAGGGACAGGTCGACAATTGCAAGTCCTCGGCTGCTGCCGTTG
CTGCTGTCCCGCAAGCATCAGCGTCTGCGCCCGAGCCGAAGGTGTCGCCG
CCTGCGTCGCCGTCCGGTTCAGCTGGCGGCAAGCTCAACCAGGACGACCA
TGTCTCGGTCGAATCATCGACGGCGGCGACCACCGAGGATGGCACGAGCG
AAGTTGTCGCTGCTGCTGCTGCTGGCATGCCGGTCTCTGAGGAGAAGACG
ACGAGACAAAATGTCGCCTCCGAAGAGAGTACATCAGCGGTAACAACAGC
AGTGGAGGAGGAGCCGGGGCAAGAGACGGCGGCGGCAGTGCAAGGGCGAC
GAAGCATGATGGTGGTGGCGGCGAACCCTCGTCTCCAAGGGGTGTCTGCT
CTGCCGCGCGAAACAGTCGTGCAGGCAAAGCTCTTCGTCGAGGAGGAGGA
CGATGAGTCGTGCGCGCCGGAAACGATGGAGGAGGGCACTACTGCTGCTG
TGGACGTTACAGAAGGTGACGATCTCGCTGGAACTTCTGTCGTTACTCCT
GCTGCTGGGGACAAGAAGGACCCAGAGCAGCAGCAACAGCAGCAGCAGAA
GGATGATGAAAACATGGCGGCGGACGGCCAACCCGCGGACGTTGTTGACT
TGCCTTCGGCAGGCATGAAACAAGACGAAAGCGTGGTGACAATCATGACT
ATCCCAGAAAAGGAAAACCATGTCACCTTGGGAGCTTCAGCAGCAATCGC
GGTTTCCACAGAACCGGCACACATGGAGGAGGAGGGCGACGAGAACCCGG
CATCTTGTTTGCGGTCCGAGGAAGAAAGGCAGGGAGAAACCCGGCCGGAG
GGCGCGGTAGTTGCTTCCGACGAAGGGCACGATGAGCAACAGCAGGTGAA
CGAGGCCGGTGCTTGTACCGCCGACCCTGCCAAACAACGGTCAGGTGATG
CTCAGGAAGTCCCTCAGGTGGTCATGCAGCCAGCATCGGGGGAAGAAGAC
GAACAACAGCAACACGTGGTTCTGGTCCAAGAAATTGATGCTGCTTCCGA
TACCACTCAGTCGACTTCTCCCCCTCATGTCGTGATGCCGGAGGAGGAGC
GAGAAGAACGCAATCGTACAAACGATGAGCCGATGCCGTCTGTGCTTCTG
CAGAACGAACGTGACGTCGTTCCGCTTTTGCCACCGCAGGAGGAGGACCC
CGAGGCGTCGGTGATGCCGTCGCAGCCTGAGGACGACGCCGACACCGCTC
CGGTGCCACAGGGATGCGCTGTCGTGACAGAGAACGCGCCCCGCGTAGTC
GGCGAGCCTGGATCTTCGAGAAAACTAGAGGCGGCGGCAGACGTCGGGCT
CGGCGAGGAGAGGGCCGTCGCCGTACCGGGGCATGCTGGGTTGGTCGTGG
ACGAAGAAACCAGGAGTCTCGTGGAGGGAAGCAAGTACCTTCGGTTCGAG
GACGACGAGAGGACCGTGCTGTGCACCCTCACGGGCAAGAAGCTGGCCCC
GGACTACATAGGCATTCTCAACTACATGGGCAGCAGGAGGGTGCAGCAGC
TTGTCGTTGAAGGACCCGTATCCATGTCGATAAGCCCATAA

protein sequence of EsuBft409_3a-0001

>EsuBft409_3 ID=EsuBft409_3|Name=EsuBft409_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=546bp
MVISGHKNKPLFSPAAGSQKGQVDNCKSSAAAVAAVPQASASAPEPKVSP
PASPSGSAGGKLNQDDHVSVESSTAATTEDGTSEVVAAAAAGMPVSEEKT
TRQNVASEESTSAVTTAVEEEPGQETAAAVQGRRSMMVVAANPRLQGVSA
LPRETVVQAKLFVEEEDDESCAPETMEEGTTAAVDVTEGDDLAGTSVVTP
AAGDKKDPEQQQQQQQKDDENMAADGQPADVVDLPSAGMKQDESVVTIMT
IPEKENHVTLGASAAIAVSTEPAHMEEEGDENPASCLRSEEERQGETRPE
GAVVASDEGHDEQQQVNEAGACTADPAKQRSGDAQEVPQVVMQPASGEED
EQQQHVVLVQEIDAASDTTQSTSPPHVVMPEEEREERNRTNDEPMPSVLL
QNERDVVPLLPPQEEDPEASVMPSQPEDDADTAPVPQGCAVVTENAPRVV
GEPGSSRKLEAAADVGLGEERAVAVPGHAGLVVDEETRSLVEGSKYLRFE
DDERTVLCTLTGKKLAPDYIGILNYMGSRRVQQLVVEGPVSMSISP

mRNA from alignment at Scaffold_242:753305..754945+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft409_3a-0001 ID=EsuBft409_3a-0001|Name=EsuBft409_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1641bp|location=Sequence derived from alignment at Scaffold_242:753305..754945+ (Ectocarpus subulatus male Bft15b)
ATGGTGATCTCGGGTCACAAGAACAAGCCTCTTTTCAGTCCTGCCGCCGG
TTCCCAGAAGGGACAGGTCGACAATTGCAAGTCCTCGGCTGCTGCCGTTG
CTGCTGTCCCGCAAGCATCAGCGTCTGCGCCCGAGCCGAAGGTGTCGCCG
CCTGCGTCGCCGTCCGGTTCAGCTGGCGGCAAGCTCAACCAGGACGACCA
TGTCTCGGTCGAATCATCGACGGCGGCGACCACCGAGGATGGCACGAGCG
AAGTTGTCGCTGCTGCTGCTGCTGGCATGCCGGTCTCTGAGGAGAAGACG
ACGAGACAAAATGTCGCCTCCGAAGAGAGTACATCAGCGGTAACAACAGC
AGTGGAGGAGGAGCCGGGGCAAGAGACGGCGGCGGCAGTGCAAGGGCGAC
GAAGCATGATGGTGGTGGCGGCGAACCCTCGTCTCCAAGGGGTGTCTGCT
CTGCCGCGCGAAACAGTCGTGCAGGCAAAGCTCTTCGTCGAGGAGGAGGA
CGATGAGTCGTGCGCGCCGGAAACGATGGAGGAGGGCACTACTGCTGCTG
TGGACGTTACAGAAGGTGACGATCTCGCTGGAACTTCTGTCGTTACTCCT
GCTGCTGGGGACAAGAAGGACCCAGAGCAGCAGCAACAGCAGCAGCAGAA
GGATGATGAAAACATGGCGGCGGACGGCCAACCCGCGGACGTTGTTGACT
TGCCTTCGGCAGGCATGAAACAAGACGAAAGCGTGGTGACAATCATGACT
ATCCCAGAAAAGGAAAACCATGTCACCTTGGGAGCTTCAGCAGCAATCGC
GGTTTCCACAGAACCGGCACACATGGAGGAGGAGGGCGACGAGAACCCGG
CATCTTGTTTGCGGTCCGAGGAAGAAAGGCAGGGAGAAACCCGGCCGGAG
GGCGCGGTAGTTGCTTCCGACGAAGGGCACGATGAGCAACAGCAGGTGAA
CGAGGCCGGTGCTTGTACCGCCGACCCTGCCAAACAACGGTCAGGTGATG
CTCAGGAAGTCCCTCAGGTGGTCATGCAGCCAGCATCGGGGGAAGAAGAC
GAACAACAGCAACACGTGGTTCTGGTCCAAGAAATTGATGCTGCTTCCGA
TACCACTCAGTCGACTTCTCCCCCTCATGTCGTGATGCCGGAGGAGGAGC
GAGAAGAACGCAATCGTACAAACGATGAGCCGATGCCGTCTGTGCTTCTG
CAGAACGAACGTGACGTCGTTCCGCTTTTGCCACCGCAGGAGGAGGACCC
CGAGGCGTCGGTGATGCCGTCGCAGCCTGAGGACGACGCCGACACCGCTC
CGGTGCCACAGGGATGCGCTGTCGTGACAGAGAACGCGCCCCGCGTAGTC
GGCGAGCCTGGATCTTCGAGAAAACTAGAGGCGGCGGCAGACGTCGGGCT
CGGCGAGGAGAGGGCCGTCGCCGTACCGGGGCATGCTGGGTTGGTCGTGG
ACGAAGAAACCAGGAGTCTCGTGGAGGGAAGCAAGTACCTTCGGTTCGAG
GACGACGAGAGGACCGTGCTGTGCACCCTCACGGGCAAGAAGCTGGCCCC
GGACTACATAGGCATTCTCAACTACATGGGCAGCAGGAGGGTGCAGCAGC
TTGTCGTTGAAGGACCCGTATCCATGTCGATAAGCCCATAA

Coding sequence (CDS) from alignment at Scaffold_242:753305..754945+

>EsuBft409_3a-0001 ID=EsuBft409_3a-0001|Name=EsuBft409_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1641bp|location=Sequence derived from alignment at Scaffold_242:753305..754945+ (Ectocarpus subulatus male Bft15b)
ATGGTGATCTCGGGTCACAAGAACAAGCCTCTTTTCAGTCCTGCCGCCGG
TTCCCAGAAGGGACAGGTCGACAATTGCAAGTCCTCGGCTGCTGCCGTTG
CTGCTGTCCCGCAAGCATCAGCGTCTGCGCCCGAGCCGAAGGTGTCGCCG
CCTGCGTCGCCGTCCGGTTCAGCTGGCGGCAAGCTCAACCAGGACGACCA
TGTCTCGGTCGAATCATCGACGGCGGCGACCACCGAGGATGGCACGAGCG
AAGTTGTCGCTGCTGCTGCTGCTGGCATGCCGGTCTCTGAGGAGAAGACG
ACGAGACAAAATGTCGCCTCCGAAGAGAGTACATCAGCGGTAACAACAGC
AGTGGAGGAGGAGCCGGGGCAAGAGACGGCGGCGGCAGTGCAAGGGCGAC
GAAGCATGATGGTGGTGGCGGCGAACCCTCGTCTCCAAGGGGTGTCTGCT
CTGCCGCGCGAAACAGTCGTGCAGGCAAAGCTCTTCGTCGAGGAGGAGGA
CGATGAGTCGTGCGCGCCGGAAACGATGGAGGAGGGCACTACTGCTGCTG
TGGACGTTACAGAAGGTGACGATCTCGCTGGAACTTCTGTCGTTACTCCT
GCTGCTGGGGACAAGAAGGACCCAGAGCAGCAGCAACAGCAGCAGCAGAA
GGATGATGAAAACATGGCGGCGGACGGCCAACCCGCGGACGTTGTTGACT
TGCCTTCGGCAGGCATGAAACAAGACGAAAGCGTGGTGACAATCATGACT
ATCCCAGAAAAGGAAAACCATGTCACCTTGGGAGCTTCAGCAGCAATCGC
GGTTTCCACAGAACCGGCACACATGGAGGAGGAGGGCGACGAGAACCCGG
CATCTTGTTTGCGGTCCGAGGAAGAAAGGCAGGGAGAAACCCGGCCGGAG
GGCGCGGTAGTTGCTTCCGACGAAGGGCACGATGAGCAACAGCAGGTGAA
CGAGGCCGGTGCTTGTACCGCCGACCCTGCCAAACAACGGTCAGGTGATG
CTCAGGAAGTCCCTCAGGTGGTCATGCAGCCAGCATCGGGGGAAGAAGAC
GAACAACAGCAACACGTGGTTCTGGTCCAAGAAATTGATGCTGCTTCCGA
TACCACTCAGTCGACTTCTCCCCCTCATGTCGTGATGCCGGAGGAGGAGC
GAGAAGAACGCAATCGTACAAACGATGAGCCGATGCCGTCTGTGCTTCTG
CAGAACGAACGTGACGTCGTTCCGCTTTTGCCACCGCAGGAGGAGGACCC
CGAGGCGTCGGTGATGCCGTCGCAGCCTGAGGACGACGCCGACACCGCTC
CGGTGCCACAGGGATGCGCTGTCGTGACAGAGAACGCGCCCCGCGTAGTC
GGCGAGCCTGGATCTTCGAGAAAACTAGAGGCGGCGGCAGACGTCGGGCT
CGGCGAGGAGAGGGCCGTCGCCGTACCGGGGCATGCTGGGTTGGTCGTGG
ACGAAGAAACCAGGAGTCTCGTGGAGGGAAGCAAGTACCTTCGGTTCGAG
GACGACGAGAGGACCGTGCTGTGCACCCTCACGGGCAAGAAGCTGGCCCC
GGACTACATAGGCATTCTCAACTACATGGGCAGCAGGAGGGTGCAGCAGC
TTGTCGTTGAAGGACCCGTATCCATGTCGATAAGCCCATAA