Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft4075_2 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | Coil |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 284 |
| Date last modified | 2016-06-15 |
| Date creation | 2016-06-15 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft4075_2a-0001 ID=EsuBft4075_2a-0001|Name=EsuBft4075_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2845bp|location=Sequence derived from alignment at Scaffold_68:60781..63625- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTCATTCATCCCGGCGATGGTCGCGACGGCCGTTCCGGGGGCTCCGGC
TCCGGCTCCGGCGTTGGCGCGAGTGCCAATCCCCGTGAGCTCTCCCACCT
TCGTTACCCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGGCG
GTGCCCTGTGCCGCCGATAAAATCCAGCTAGCCTCGTGTTCGTCCTCTTG
GTGAAAGGAGATGTCTGCCGCTGGCGTATCGAGGGTGCGACCGAGAAAGG
CAACGTCTGCAGCAAGGAATTGATAGTAGAGCGGGGATGTGGCAGCTGAC
CGTGGATTGTCGAGGGTGACCTCAAAGCTCGTAGCAGGTCGTGGATGCGT
CGATGCTGCCTTCTGAGACGGCGACNNNNNNNNNNNNNNNNNNNNNNNNN
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TGGGGGCACGCAGATAGCTAAGTCCGGATGGGGTACGTCCTAAGAGGGTA
TACCTCCTGACGTCCCCTATCTTTATCTAGACCGACTGTGTACCCTATCT
GTGCCATACAGCAACACTCCTTAACAACACACAGTATTCTACAGCTGTAA
TATCGTTTCTCCCTTGGTTTTGAGTTGCTCGTCCCCGGTTCTATATACAT
ACACCAGAGACATTACGCATACGTGCCGTGGGCGGCTGCATCTACGCATC
AACACTCACCGCCGAAGAAGGCGTTGACTCCCAGCGAAGGGCAGAGTAGC
TCGACGAGCTTGTGGAAACTGCCTTTCTCCATGCGGTTCGACCGCCTCCA
GCCGCGCCGTTCATCGAGGTCCGCCTCGTGTTGGGCCCACGGAAGTCGCT
TGGGCTCGTAGATGGGCTCCCGTTCCTGAGGGCAGTGGGCACGATGAGCT
TCTCCTGCTGCCACCACGCCCGCCGCCACTACTTCGGCCCTCAGAAGACC
CAGGACCGTGAATCTCTTGCCTTCGTGGGCTGCATTCTCCTCGTCGATCG
CTCGTCAACGGCGCTTCTCCCGGCGTTGCGCTGCGGGGTCTGTGGGATGC
TGGCGCTTCCCGCGCTCAGCCATGGTGGTCGACTTGCCGTGGGAAACTTT
TTGGGGTGTTGTGGGTGCTGTCCAGGTGTGGTGCGATGAAGGCAGCAAGC
GTGACCGGTGTCTGCTTCGGCTGCCCGGAAAAAGCGGGGCGTTTTTCCCC
GGAACCGTGAAAGGAGCAAGCCCCAAAAAATCCCGGCTCCCTCTT back to topprotein sequence of EsuBft4075_2a-0001 >EsuBft4075_2 ID=EsuBft4075_2|Name=EsuBft4075_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=70bp
MSFIPAMVATAVPGAPAPAPALARVPIPVSSPTFVTLXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXX back to topmRNA from alignment at Scaffold_68:60781..63625- Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft4075_2a-0001 ID=EsuBft4075_2a-0001|Name=EsuBft4075_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2845bp|location=Sequence derived from alignment at Scaffold_68:60781..63625- (Ectocarpus subulatus male Bft15b)
ATGTCATTCATCCCGGCGATGGTCGCGACGGCCGTTCCGGGGGCTCCGGC
TCCGGCTCCGGCGTTGGCGCGAGTGCCAATCCCCGTGAGCTCTCCCACCT
TCGTTACCCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGGCG
GTGCCCTGTGCCGCCGATAAAATCCAGCTAGCCTCGTGTTCGTCCTCTTG
GTGAAAGGAGATGTCTGCCGCTGGCGTATCGAGGGTGCGACCGAGAAAGG
CAACGTCTGCAGCAAGGAATTGATAGTAGAGCGGGGATGTGGCAGCTGAC
CGTGGATTGTCGAGGGTGACCTCAAAGCTCGTAGCAGGTCGTGGATGCGT
CGATGCTGCCTTCTGAGACGGCGACNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TGGGGGCACGCAGATAGCTAAGTCCGGATGGGGTACGTCCTAAGAGGGTA
TACCTCCTGACGTCCCCTATCTTTATCTAGACCGACTGTGTACCCTATCT
GTGCCATACAGCAACACTCCTTAACAACACACAGTATTCTACAGCTGTAA
TATCGTTTCTCCCTTGGTTTTGAGTTGCTCGTCCCCGGTTCTATATACAT
ACACCAGAGACATTACGCATACGTGCCGTGGGCGGCTGCATCTACGCATC
AACACTCACCGCCGAAGAAGGCGTTGACTCCCAGCGAAGGGCAGAGTAGC
TCGACGAGCTTGTGGAAACTGCCTTTCTCCATGCGGTTCGACCGCCTCCA
GCCGCGCCGTTCATCGAGGTCCGCCTCGTGTTGGGCCCACGGAAGTCGCT
TGGGCTCGTAGATGGGCTCCCGTTCCTGAGGGCAGTGGGCACGATGAGCT
TCTCCTGCTGCCACCACGCCCGCCGCCACTACTTCGGCCCTCAGAAGACC
CAGGACCGTGAATCTCTTGCCTTCGTGGGCTGCATTCTCCTCGTCGATCG
CTCGTCAACGGCGCTTCTCCCGGCGTTGCGCTGCGGGGTCTGTGGGATGC
TGGCGCTTCCCGCGCTCAGCCATGGTGGTCGACTTGCCGTGGGAAACTTT
TTGGGGTGTTGTGGGTGCTGTCCAGGTGTGGTGCGATGAAGGCAGCAAGC
GTGACCGGTGTCTGCTTCGGCTGCCCGGAAAAAGCGGGGCGTTTTTCCCC
GGAACCGTGAAAGGAGCAAGCCCCAAAAAATCCCGGCTCCCTCTT back to topCoding sequence (CDS) from alignment at Scaffold_68:60781..63625- >EsuBft4075_2a-0001 ID=EsuBft4075_2a-0001|Name=EsuBft4075_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=210bp|location=Sequence derived from alignment at Scaffold_68:60781..63625- (Ectocarpus subulatus male Bft15b)
ATGTCATTCATCCCGGCGATGGTCGCGACGGCCGTTCCGGGGGCTCCGGC
TCCGGCTCCGGCGTTGGCGCGAGTGCCAATCCCCGTGAGCTCTCCCACCT
TCGTTACCCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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