EsuBft4071_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4071_3a-0001
Unique NameEsuBft4071_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:980088..982213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft4071_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length157
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4071_3aEsuBft4071_3aEctocarpus subulatus male Bft15bgeneScaffold_499 980088..982213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4071_3a-0001EsuBft4071_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 980267..982198 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4071_3a-0001-exonEsuBft4071_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 980088..980644 -
EsuBft4071_3a-0001-exonagat-exon-79167Ectocarpus subulatus male Bft15bexonScaffold_499 981104..981505 -
EsuBft4071_3a-0001-exonagat-exon-79166Ectocarpus subulatus male Bft15bexonScaffold_499 981602..982213 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4071_3a-0001-exonagat-three_prime_utr-15117Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 980088..980266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4071_3a-0001-cdsEsuBft4071_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 980267..980644 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4071_3a-0001-exonagat-five_prime_utr-9620Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 982199..982213 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4071_3a-0001 ID=EsuBft4071_3a-0001|Name=EsuBft4071_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1571bp|location=Sequence derived from alignment at Scaffold_499:980088..982213- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTCCATTTTTCAACATGGGCAACAAGAACAAGAGAGACAACAAAGCCGG
CTCGAACTCGCAGGCAGGCACGGACGCCGGTAACGGCGCTCTTAAGACCC
CCTCGCACAACCCCAAACCCAGTCCTCCGCTGCAGTCTACACAGCAGTCT
GTCAAGAAACCGTCCACCAACGGTAAACAGCCCCAGCGGCTTGCCACCGG
TGACGCTTCTCCCAGCTCTAAAGACTACGCTGGCGCCGCCCGCAACGGAA
CTGGGAAGGGTGGCAGCTCCAGCAATGGAGGTGGCAGCTCCAACAGTGGT
GGGGGTGACCCCAGCAACCGCTTCGCAGCACTGGGAGAAGAGAACTCACC
CAGCAAGGCCACCGATGGCGGTCGCGAGGAAGGAGAGATCCCTCCGGACG
ACCCCACACGCGCACTGGCTGCAGACGTTCTCGCGAATCTCCAACAAGCA
GCCACCACTGCTGCTCCCTCCATTCCTGCCCCTGCTGGGAACTTCTTGGC
GCCCTTCATCATCTCAAGCTTAGAGCAGGCGCGTGACAACAAGGAGGAAC
CGGAACCTTGGATCATGCGCCTAGTCCTAGGAGCTCCCGTGCAAGACGCG
ACACTCACTCAGGTAGCATCTCCGCTCCAGCAAAGCTTAGCCGGGTCACA
ACCGCAGCCGAATGTAGCACCTCTACCCCAGCACAGTGGAGACGTGTCAC
AACAGCAGCAGCAGAACAATCTAGCCATTCCCACACACGAGCAACGCACT
CGCGCAACTCAAGACACTTTCAGAGCTCTCAAGGCTTCCGAGTTTCCGCC
AACTCTGAAACTTGAGGGTCTCCCATCGGAAGATGTACCCGAGATCATGG
CACAGTACCGCACGCACATTCGCCTCTCGCTGCCCGAAAACACCTCGGAC
GACATCATCGACCGTAGAGCTATTAAGAACTTACGCCTCATCACGAAAGG
CGCCGCTGCGCAATCGCTTGACCTCATTCTGAGTTCTCACTTGGAATGGC
GGTCGGAACAGCAGCTAAAACTTCACACGGGTGAACTCGAGAATCGGGTC
AACCAGCTCGAGAAACTTATCAACACGCAAGGAGACACCCACGTCTCCAG
TGCAGCCCGCGGCCGTAGTAACAGTCGGGGACCAACCACCCAGAAGCGGG
GTCCTTCCCAGCCCCAAATCCACCGGAACCAGAAGGCAAAGGTGGCGTTC
ACCCAGGACACTAAGTCCTCGGGCGGAACAGTGGATGGTGGTAGCGGTAG
CAAGGGGGGTGTTGAATGCACTTACCCGGGCTGCGCAGGGAAGTCGAAAC
GGTTCACGCATTCACGGCAGGAGTGTAGGACCGAGAAACGTGATCTCCAG
AACGGAATCAAGTACGTCTCGGTAACCTCGCAGCAGGGATAGGATGGCCC
AGATAGGCACCATTCCTCGGCCTGTTTGGGAGACAAGTCTAGAAACTCGA
GAGCAGTAACGAAGAGAGTAGAAGTAGACGAGAGGAATCCTGGGCACCAT
CCAAAACGTGTCCAGCCTCTGGTGGTAGAACAAGCAGATGAGGTAGCTCG
TAACACAGTGCCCGGAATACC
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protein sequence of EsuBft4071_3a-0001

>EsuBft4071_3 ID=EsuBft4071_3|Name=EsuBft4071_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=458bp
MGNKNKRDNKAGSNSQAGTDAGNGALKTPSHNPKPSPPLQSTQQSVKKPS
TNGKQPQRLATGDASPSSKDYAGAARNGTGKGGSSSNGGGSSNSGGGDPS
NRFAALGEENSPSKATDGGREEGEIPPDDPTRALAADVLANLQQAATTAA
PSIPAPAGNFLAPFIISSLEQARDNKEEPEPWIMRLVLGAPVQDATLTQV
ASPLQQSLAGSQPQPNVAPLPQHSGDVSQQQQQNNLAIPTHEQRTRATQD
TFRALKASEFPPTLKLEGLPSEDVPEIMAQYRTHIRLSLPENTSDDIIDR
RAIKNLRLITKGAAAQSLDLILSSHLEWRSEQQLKLHTGELENRVNQLEK
LINTQGDTHVSSAARGRSNSRGPTTQKRGPSQPQIHRNQKAKVAFTQDTK
SSGGTVDGGSGSKGGVECTYPGCAGKSKRFTHSRQECRTEKRDLQNGIKY
VSVTSQQG
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mRNA from alignment at Scaffold_499:980088..982213-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4071_3a-0001 ID=EsuBft4071_3a-0001|Name=EsuBft4071_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2126bp|location=Sequence derived from alignment at Scaffold_499:980088..982213- (Ectocarpus subulatus male Bft15b)
GTTCCATTTTTCAACATGGGCAACAAGAACAAGAGAGACAACAAAGCCGG
CTCGAACTCGCAGGCAGGCACGGACGCCGGTAACGGCGCTCTTAAGACCC
CCTCGCACAACCCCAAACCCAGTCCTCCGCTGCAGTCTACACAGCAGTCT
GTCAAGAAACCGTCCACCAACGGTAAACAGCCCCAGCGGCTTGCCACCGG
TGACGCTTCTCCCAGCTCTAAAGACTACGCTGGCGCCGCCCGCAACGGAA
CTGGGAAGGGTGGCAGCTCCAGCAATGGAGGTGGCAGCTCCAACAGTGGT
GGGGGTGACCCCAGCAACCGCTTCGCAGCACTGGGAGAAGAGAACTCACC
CAGCAAGGCCACCGATGGCGGTCGCGAGGAAGGAGAGATCCCTCCGGACG
ACCCCACACGCGCACTGGCTGCAGACGTTCTCGCGAATCTCCAACAAGCA
GCCACCACTGCTGCTCCCTCCATTCCTGCCCCTGCTGGGAACTTCTTGGC
GCCCTTCATCATCTCAAGCTTAGAGCAGGCGCGTGACAACAAGGAGGAAC
CGGAACCTTGGATCATGCGCCTAGTCCTAGGAGCTCCCGTGCAAGACGCG
ACACTCACTCAGGTGAAACCACGCCGATTGGAATCTGATTTTTCTGCTTC
TCGTTCCGATGACACTCCTATCGTTCAGCAAGTTGTACAACCCCAGCCGC
AGCAGCAGGTAGCATCTCCGCTCCAGCAAAGCTTAGCCGGGTCACAACCG
CAGCCGAATGTAGCACCTCTACCCCAGCACAGTGGAGACGTGTCACAACA
GCAGCAGCAGAACAATCTAGCCATTCCCACACACGAGCAACGCACTCGCG
CAACTCAAGACACTTTCAGAGCTCTCAAGGCTTCCGAGTTTCCGCCAACT
CTGAAACTTGAGGGTCTCCCATCGGAAGATGTACCCGAGATCATGGCACA
GTACCGCACGCACATTCGCCTCTCGCTGCCCGAAAACACCTCGGACGACA
TCATCGACCGTAGAGCTATTAAGAACTTACGCCTCATCACGAAAGGCGCC
GCTGCGCAATCGCTTGACCTCATTCTGAGTTCTCACTTGGAATGGCGGTC
GGAACAGCAGGTAGCCGCAATTCGTGCACGGGGTGAACAAGTTACCATCT
CTCCTCCTCAAACCTGGAAACAATGGGTTAACGCTATGACTACTCTCTTC
GCACCCGCTAACAGAATCGCACTTCTCGCACGCGAAGCCATGACTCTCCA
AGCGAAACCTAACGAGTCTGTCGACCTGTTTTCTATTCGAGTCTCACGCG
CATACTCTAGACTTCTCGCCGAAGCCGAACGGACTGCACCACCGAATATG
TCTGCACACGAACACGCATTTGAGAAAGCACTCATTGCATCGTTTGAGAA
CGGTTTGCCGCCGGATATCAGGGTAGAGATGATTCGAGAAGACGCACCGC
AAACGTTTATGACTTCCAAAACGCGCGCCCGCAAACACGAAGCGAACAAA
CTGCGCTCTGCAACGTCTCAATCAGCCGCCTCGGTATCTTCCCTCCTCGA
TTCCACACTACAACCGCAGCTAAAACTTCACACGGGTGAACTCGAGAATC
GGGTCAACCAGCTCGAGAAACTTATCAACACGCAAGGAGACACCCACGTC
TCCAGTGCAGCCCGCGGCCGTAGTAACAGTCGGGGACCAACCACCCAGAA
GCGGGGTCCTTCCCAGCCCCAAATCCACCGGAACCAGAAGGCAAAGGTGG
CGTTCACCCAGGACACTAAGTCCTCGGGCGGAACAGTGGATGGTGGTAGC
GGTAGCAAGGGGGGTGTTGAATGCACTTACCCGGGCTGCGCAGGGAAGTC
GAAACGGTTCACGCATTCACGGCAGGAGTGTAGGACCGAGAAACGTGATC
TCCAGAACGGAATCAAGTACGTCTCGGTAACCTCGCAGCAGGGATAGGAT
GGCCCAGATAGGCACCATTCCTCGGCCTGTTTGGGAGACAAGTCTAGAAA
CTCGAGAGCAGTAACGAAGAGAGTAGAAGTAGACGAGAGGAATCCTGGGC
ACCATCCAAAACGTGTCCAGCCTCTGGTGGTAGAACAAGCAGATGAGGTA
GCTCGTAACACAGTGCCCGGAATACC
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Coding sequence (CDS) from alignment at Scaffold_499:980088..982213-

>EsuBft4071_3a-0001 ID=EsuBft4071_3a-0001|Name=EsuBft4071_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1377bp|location=Sequence derived from alignment at Scaffold_499:980088..982213- (Ectocarpus subulatus male Bft15b)
ATGGGCAACAAGAACAAGAGAGACAACAAAGCCGGCTCGAACTCGCAGGC
AGGCACGGACGCCGGTAACGGCGCTCTTAAGACCCCCTCGCACAACCCCA
AACCCAGTCCTCCGCTGCAGTCTACACAGCAGTCTGTCAAGAAACCGTCC
ACCAACGGTAAACAGCCCCAGCGGCTTGCCACCGGTGACGCTTCTCCCAG
CTCTAAAGACTACGCTGGCGCCGCCCGCAACGGAACTGGGAAGGGTGGCA
GCTCCAGCAATGGAGGTGGCAGCTCCAACAGTGGTGGGGGTGACCCCAGC
AACCGCTTCGCAGCACTGGGAGAAGAGAACTCACCCAGCAAGGCCACCGA
TGGCGGTCGCGAGGAAGGAGAGATCCCTCCGGACGACCCCACACGCGCAC
TGGCTGCAGACGTTCTCGCGAATCTCCAACAAGCAGCCACCACTGCTGCT
CCCTCCATTCCTGCCCCTGCTGGGAACTTCTTGGCGCCCTTCATCATCTC
AAGCTTAGAGCAGGCGCGTGACAACAAGGAGGAACCGGAACCTTGGATCA
TGCGCCTAGTCCTAGGAGCTCCCGTGCAAGACGCGACACTCACTCAGGTA
GCATCTCCGCTCCAGCAAAGCTTAGCCGGGTCACAACCGCAGCCGAATGT
AGCACCTCTACCCCAGCACAGTGGAGACGTGTCACAACAGCAGCAGCAGA
ACAATCTAGCCATTCCCACACACGAGCAACGCACTCGCGCAACTCAAGAC
ACTTTCAGAGCTCTCAAGGCTTCCGAGTTTCCGCCAACTCTGAAACTTGA
GGGTCTCCCATCGGAAGATGTACCCGAGATCATGGCACAGTACCGCACGC
ACATTCGCCTCTCGCTGCCCGAAAACACCTCGGACGACATCATCGACCGT
AGAGCTATTAAGAACTTACGCCTCATCACGAAAGGCGCCGCTGCGCAATC
GCTTGACCTCATTCTGAGTTCTCACTTGGAATGGCGGTCGGAACAGCAGC
TAAAACTTCACACGGGTGAACTCGAGAATCGGGTCAACCAGCTCGAGAAA
CTTATCAACACGCAAGGAGACACCCACGTCTCCAGTGCAGCCCGCGGCCG
TAGTAACAGTCGGGGACCAACCACCCAGAAGCGGGGTCCTTCCCAGCCCC
AAATCCACCGGAACCAGAAGGCAAAGGTGGCGTTCACCCAGGACACTAAG
TCCTCGGGCGGAACAGTGGATGGTGGTAGCGGTAGCAAGGGGGGTGTTGA
ATGCACTTACCCGGGCTGCGCAGGGAAGTCGAAACGGTTCACGCATTCAC
GGCAGGAGTGTAGGACCGAGAAACGTGATCTCCAGAACGGAATCAAGTAC
GTCTCGGTAACCTCGCAGCAGGGATAG
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