EsuBft4071_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft4071_2a-0001
Unique Name	EsuBft4071_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:983038..984461 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4530.OS11T0656500-01
ProteomeId	EsuBft4071_2
Protein domains	IPR001584
Protein domains	PTHR11439
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	35493\|Streptophyta
Length	1424
Evalue	3.98e-14
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M2IR@4447\|Liliopsida,3IKX9@38820\|Poales
Date last modified	2016-06-15
Date creation	2016-06-15
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft4071_2a	EsuBft4071_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 983038..984461 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4071_2a-0001-exon	EsuBft4071_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 983038..984461 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4071_2a-0001-exon	agat-three_prime_utr-15116	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 983038..983726 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4071_2a-0001-cds	EsuBft4071_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 983727..984461 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4071_2a-0001	EsuBft4071_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 983727..984461 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:983038..984461-
coding sequence from alignment at Scaffold_499:983038..984461-

spliced messenger RNA

>EsuBft4071_2a-0001 ID=EsuBft4071_2a-0001|Name=EsuBft4071_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1424bp|location=Sequence derived from alignment at Scaffold_499:983038..984461- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGCTGCCGTTGGTGCTTGCCGGCGCGGGGGACGAGGGCGCCGGT
GCCGAAGCAGGGGGGCGGGTACCGCGGCAAGGGGGCGCCGAACGAGGTGT
TCCACATTGACATTTGCGGCGGCTACACGGCGACCATCGGCGGCAACCAC
TACATGCTCTTGGGCGTGGACGCCGCCACGGGCTGGATGGTCTGCTATGC
GATGCGGCGGAACTCGGAGGCGCTGGCGGTCTTCAAGCGCATGGTCGTGG
ACGCCGCTCGCAAGGCCGGCACCGCGATCAAATGCATCCGCTGCGACTGC
GACGCGCTCTGGACCAGCGGTAGCTTCAAGGAGTTCTGCGCCGGCATGGG
GATCGCGCTCGAGTTCTCCCCTCCCGGCGTGCAGCAGTACAACGGCGTCG
TCGAGAGCGCCATCCAGAGGTGCCTGAAGGTGGCCAAGGCTTCTCGCCGG
GCTGCCCAAGAGCTGCTTGGCCCTGCCGGATTTTCATGCATCCGCGGGCT
GAGCGTACGGGGCGATGAGCTCTGGACGGAGTCCGCAAAAGACGCCGCGC
AGAAGCTGAACAAGTCTGCATCTCCATCCAACCCAAGGGGTGCGTCGCCG
CAGGAGCTCTACACCGGCAAGAAAGGCCCTTTTCGCTTGATTTTCGTTTT
TCCAGTACGGTTTCATGTGGGAACGGCCGGCGACCAAGATGGACGACAGA
GCCGTGCCGTGTTTTTTCCTCAATGCCGGAGANNNNATCTGCAGGAAGCT
TTAAGGGATGCTTCCCGGTACAGACACTCCGTTTCGCATGTCGTCCGGGA
TGTCTGGCCAATCCGAAGAGCGTGAGGGCTTCCTTGGCCGCGCATGGCGT
TACTGCTGAACGTCGGTTACCGTCCTTATGCTCCGCGGGCGTCGTCTGTA
CATTCAACATGCATTCCCGGTCTCAAAATTCGAAGACTGGTAGCGAGGTT
GACGATCGCCCGTTGTAGGTAGGAGAGCGATCACCCTCTCCCATGGACGG
GGGTGCTAGCTCGGCCGAGAGCAAAGTTGCTTGCCACTATGTATCTACNA
GCCGTGCCGTGTTTTTTCCTCAATGCCGGAGATAACCACGCAAGTTGACC
GTGGCCGTAGAGCTCGCAAATGCAGCCACTGGAGCAGCAGTCGTGCCGCT
GTCACCCGGTGGTTGGTGCGAAGGAAATGTGTCACAACGAACAACCCAAG
GCGTGCATGTCGGCGGGAGAGATTCTCAATCTGCAGGAAGCTTTAAGGGA
TGCTTCCCGGTACAGACACTCCGTTTCGCATGTCGTCCGGGATGTCTGGC
CAATCCGAAGAGCGTGAGGGCTTCCTTGGCCGCGCATGGCGTTACTGCTG
AACGTCGGTTACCGTCCTTATGCTCCGCGGGCGTCGTCTGTACATTCAAC
ATGCATTCCCGGTCTCAAAATTCG

protein sequence of EsuBft4071_2a-0001

>EsuBft4071_2 ID=EsuBft4071_2|Name=EsuBft4071_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=245bp
MDSCRWCLPARGTRAPVPKQGGGYRGKGAPNEVFHIDICGGYTATIGGNH
YMLLGVDAATGWMVCYAMRRNSEALAVFKRMVVDAARKAGTAIKCIRCDC
DALWTSGSFKEFCAGMGIALEFSPPGVQQYNGVVESAIQRCLKVAKASRR
AAQELLGPAGFSCIRGLSVRGDELWTESAKDAAQKLNKSASPSNPRGASP
QELYTGKKGPFRLIFVFPVRFHVGTAGDQDGRQSRAVFFPQCRRX

mRNA from alignment at Scaffold_499:983038..984461-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft4071_2a-0001 ID=EsuBft4071_2a-0001|Name=EsuBft4071_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1424bp|location=Sequence derived from alignment at Scaffold_499:983038..984461- (Ectocarpus subulatus male Bft15b)
ATGGACAGCTGCCGTTGGTGCTTGCCGGCGCGGGGGACGAGGGCGCCGGT
GCCGAAGCAGGGGGGCGGGTACCGCGGCAAGGGGGCGCCGAACGAGGTGT
TCCACATTGACATTTGCGGCGGCTACACGGCGACCATCGGCGGCAACCAC
TACATGCTCTTGGGCGTGGACGCCGCCACGGGCTGGATGGTCTGCTATGC
GATGCGGCGGAACTCGGAGGCGCTGGCGGTCTTCAAGCGCATGGTCGTGG
ACGCCGCTCGCAAGGCCGGCACCGCGATCAAATGCATCCGCTGCGACTGC
GACGCGCTCTGGACCAGCGGTAGCTTCAAGGAGTTCTGCGCCGGCATGGG
GATCGCGCTCGAGTTCTCCCCTCCCGGCGTGCAGCAGTACAACGGCGTCG
TCGAGAGCGCCATCCAGAGGTGCCTGAAGGTGGCCAAGGCTTCTCGCCGG
GCTGCCCAAGAGCTGCTTGGCCCTGCCGGATTTTCATGCATCCGCGGGCT
GAGCGTACGGGGCGATGAGCTCTGGACGGAGTCCGCAAAAGACGCCGCGC
AGAAGCTGAACAAGTCTGCATCTCCATCCAACCCAAGGGGTGCGTCGCCG
CAGGAGCTCTACACCGGCAAGAAAGGCCCTTTTCGCTTGATTTTCGTTTT
TCCAGTACGGTTTCATGTGGGAACGGCCGGCGACCAAGATGGACGACAGA
GCCGTGCCGTGTTTTTTCCTCAATGCCGGAGANNNNATCTGCAGGAAGCT
TTAAGGGATGCTTCCCGGTACAGACACTCCGTTTCGCATGTCGTCCGGGA
TGTCTGGCCAATCCGAAGAGCGTGAGGGCTTCCTTGGCCGCGCATGGCGT
TACTGCTGAACGTCGGTTACCGTCCTTATGCTCCGCGGGCGTCGTCTGTA
CATTCAACATGCATTCCCGGTCTCAAAATTCGAAGACTGGTAGCGAGGTT
GACGATCGCCCGTTGTAGGTAGGAGAGCGATCACCCTCTCCCATGGACGG
GGGTGCTAGCTCGGCCGAGAGCAAAGTTGCTTGCCACTATGTATCTACNA
GCCGTGCCGTGTTTTTTCCTCAATGCCGGAGATAACCACGCAAGTTGACC
GTGGCCGTAGAGCTCGCAAATGCAGCCACTGGAGCAGCAGTCGTGCCGCT
GTCACCCGGTGGTTGGTGCGAAGGAAATGTGTCACAACGAACAACCCAAG
GCGTGCATGTCGGCGGGAGAGATTCTCAATCTGCAGGAAGCTTTAAGGGA
TGCTTCCCGGTACAGACACTCCGTTTCGCATGTCGTCCGGGATGTCTGGC
CAATCCGAAGAGCGTGAGGGCTTCCTTGGCCGCGCATGGCGTTACTGCTG
AACGTCGGTTACCGTCCTTATGCTCCGCGGGCGTCGTCTGTACATTCAAC
ATGCATTCCCGGTCTCAAAATTCG

Coding sequence (CDS) from alignment at Scaffold_499:983038..984461-

>EsuBft4071_2a-0001 ID=EsuBft4071_2a-0001|Name=EsuBft4071_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=735bp|location=Sequence derived from alignment at Scaffold_499:983038..984461- (Ectocarpus subulatus male Bft15b)
ATGGACAGCTGCCGTTGGTGCTTGCCGGCGCGGGGGACGAGGGCGCCGGT
GCCGAAGCAGGGGGGCGGGTACCGCGGCAAGGGGGCGCCGAACGAGGTGT
TCCACATTGACATTTGCGGCGGCTACACGGCGACCATCGGCGGCAACCAC
TACATGCTCTTGGGCGTGGACGCCGCCACGGGCTGGATGGTCTGCTATGC
GATGCGGCGGAACTCGGAGGCGCTGGCGGTCTTCAAGCGCATGGTCGTGG
ACGCCGCTCGCAAGGCCGGCACCGCGATCAAATGCATCCGCTGCGACTGC
GACGCGCTCTGGACCAGCGGTAGCTTCAAGGAGTTCTGCGCCGGCATGGG
GATCGCGCTCGAGTTCTCCCCTCCCGGCGTGCAGCAGTACAACGGCGTCG
TCGAGAGCGCCATCCAGAGGTGCCTGAAGGTGGCCAAGGCTTCTCGCCGG
GCTGCCCAAGAGCTGCTTGGCCCTGCCGGATTTTCATGCATCCGCGGGCT
GAGCGTACGGGGCGATGAGCTCTGGACGGAGTCCGCAAAAGACGCCGCGC
AGAAGCTGAACAAGTCTGCATCTCCATCCAACCCAAGGGGTGCGTCGCCG
CAGGAGCTCTACACCGGCAAGAAAGGCCCTTTTCGCTTGATTTTCGTTTT
TCCAGTACGGTTTCATGTGGGAACGGCCGGCGACCAAGATGGACGACAGA
GCCGTGCCGTGTTTTTTCCTCAATGCCGGAGANNN