EsuBft4056_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4056_3a-0001
Unique NameEsuBft4056_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_265contigScaffold_265:71281..71614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft4056_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length24
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4056_3aEsuBft4056_3aEctocarpus subulatus male Bft15bgeneScaffold_265 71281..71614 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4056_3a-0001-exonagat-exon-11135Ectocarpus subulatus male Bft15bexonScaffold_265 71281..71495 +
EsuBft4056_3a-0001-exonEsuBft4056_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_265 71585..71614 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4056_3a-0001-exonagat-five_prime_utr-9585Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_265 71281..71315 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4056_3a-0001-cdsEsuBft4056_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_265 71316..71495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4056_3a-0001EsuBft4056_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_265 71316..71614 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4056_3a-0001 ID=EsuBft4056_3a-0001|Name=EsuBft4056_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=245bp|location=Sequence derived from alignment at Scaffold_265:71281..71614+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AATTTACCCTCAACTGGGAACCTCTTGTGGCCAGGATGGGTAATTCGATG
GAAGTGTCACAAGGTCTCTCTGTAGGATCGACTCCAAGAGGTGTTCTCAG
GACTGACAAACATTGTGCCCTTGGGAAGATATCCAAGTCAGGAGATAAAG
TGTGCACCCAAGGAGATTCGAACCAGTATCCAGCTGACGCCACATGCGAA
GGTGTACCGATCCAGCCGGCAGCGGAAGGAGGAAAGTCCAAGTAG
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protein sequence of EsuBft4056_3a-0001

>EsuBft4056_3 ID=EsuBft4056_3|Name=EsuBft4056_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=69bp
MGNSMEVSQGLSVGSTPRGVLRTDKHCALGKISKSGDKVCTQGDSNQYPA
DATCEGVPIQPAAEGGKSK
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mRNA from alignment at Scaffold_265:71281..71614+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4056_3a-0001 ID=EsuBft4056_3a-0001|Name=EsuBft4056_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=334bp|location=Sequence derived from alignment at Scaffold_265:71281..71614+ (Ectocarpus subulatus male Bft15b)
AATTTACCCTCAACTGGGAACCTCTTGTGGCCAGGATGGGTAATTCGATG
GAAGTGTCACAAGGTCTCTCTGTAGGATCGACTCCAAGAGGTGTTCTCAG
GACTGACAAACATTGTGCCCTTGGGAAGATATCCAAGTCAGGAGATAAAG
TGTGCACCCAAGGAGATTCGAACCAGTATCCAGCTGACGCCACATGCGAA
GGTGTACCGATCCAGGTAAAAGTCAATCGACGGATATCCTGCGAATTGGG
TTCTCCTTAACACAGTACACCAGTTTGTAGTTGGCCACCTAATGTGCTTC
ATAGCCGGCAGCGGAAGGAGGAAAGTCCAAGTAG
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Coding sequence (CDS) from alignment at Scaffold_265:71281..71614+

>EsuBft4056_3a-0001 ID=EsuBft4056_3a-0001|Name=EsuBft4056_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=210bp|location=Sequence derived from alignment at Scaffold_265:71281..71614+ (Ectocarpus subulatus male Bft15b)
ATGGGTAATTCGATGGAAGTGTCACAAGGTCTCTCTGTAGGATCGACTCC
AAGAGGTGTTCTCAGGACTGACAAACATTGTGCCCTTGGGAAGATATCCA
AGTCAGGAGATAAAGTGTGCACCCAAGGAGATTCGAACCAGTATCCAGCT
GACGCCACATGCGAAGGTGTACCGATCCAGCCGGCAGCGGAAGGAGGAAA
GTCCAAGTAG
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