EsuBft4053_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4053_2a-0001
Unique NameEsuBft4053_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_441contigScaffold_441:95802..97322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft4053_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length135
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4053_2aEsuBft4053_2aEctocarpus subulatus male Bft15bgeneScaffold_441 95802..97322 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4053_2a-0001-exonEsuBft4053_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_441 95802..95882 -
EsuBft4053_2a-0001-exonagat-exon-46628Ectocarpus subulatus male Bft15bexonScaffold_441 96051..97322 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4053_2a-0001-exonagat-three_prime_utr-15069Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 95802..95882 -
EsuBft4053_2a-0001-exonagat-three_prime_utr-15070Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 96051..97157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4053_2a-0001-cdsEsuBft4053_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_441 97158..97322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4053_2a-0001EsuBft4053_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_441 97158..97322 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4053_2a-0001 ID=EsuBft4053_2a-0001|Name=EsuBft4053_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1353bp|location=Sequence derived from alignment at Scaffold_441:95802..97322- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAAACGAAAATCGAGTCCGCGTGGCTTATGGACGGAAAGCGGTCAA
TCGCCAGGAGTACAAAGCTGCTGTTCAAAGCAGCAAAGGAAACTCGGACG
TCGGGTGCATACCTGAGGTGTTCTGCATCGTAGCACACTTCGGGAGAATG
AGGGAGCTGCTGTAGGGGGACTTTCCACTGCCTCCCCTAGGTGCCGCCAC
GCCGCCGCTGTGATGGATGATGTTGGCGTCGATGTTCTTGACGGTACGGA
AATGATCCCGCATTGCAGGAGACAACCGTTGGATATCCTCAACACCACCC
CCGCCCACGGGAGGTGGAGCGGACGTTCCCGCCGCTCCACCTGCCCGTGC
CGCTGCCCCTCTCCCAGCCTCTCGTACCCCCATCGGTGCTCGTCGTCCAC
TACCCCTTCCTCCGCCCCCCCCTGCCCTCCCACCTCCTTGTGTTTCCCGT
CTAGCTCTGCCACTGCCTTGACCTATGCTTGCTGCTCCGACGGCGCCGCC
GCCGCCATAGCCGCAGCTTGAGCTATCGTCCCCCCTGTAACGGCACCTGC
CGTGCCTCCTGCCGCAGCTGTTGATCGAGTTTCAACACAGGGACTAGAAC
TTGCAGTGCCGCCTCGTCCTCGTCTTTGTTCCCCTTGTAACGCCGCCGCC
CCAGCCGCTAGTAGCGGTGCCGGTGGTTGAGGAACAGGTGCGGTAGATGG
TGGTGGGCTTGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCTGCTGTTACTGTTGCAGCTGGTTCTACTGTCCTTCCTGCTTCCGGCC
CCTCTGCTGCTGCAACTACCTCTGATGCAGCTGCTCCTACGCAACGTTCT
CTACGAGCTTTCCCCTTGCCTTTCCCCTTGGAAGACGGCGACTGGGTTGA
AGCGGTTGCGGAGTTATTTGATGCCCCACGAACGACATGTACTGCCTGGC
TCGTACTGCCTCTTCCGACGTCAGATATCGTCGACGGTGTACTCCTCTCA
CCCGCACATTCCTCGTCGTTCCCCATGTTGTCTTCGTTCGTAGCACCTTC
GCAACTGACTCGCTGACGCTTCCGTGTTGTTGTGTCTGCCCACCCCATGA
CCGTACGGAAAGCTGCTGCCTGCCGTGATTGGTTCTCGTCGTCGCTCTTT
TTCTCTGCGTTTGATTTCGTCCCGGGCTTTTTTGCTCCAGCCGCAGGCGT
TGATCCTTTCCTGCGACCCATGATCCTCTGTGGTGCTGTGCGTGTGCTGT
GGATTGTACGTGTGTGTGCTGCGGTGAGAGAGCTGTGTCCTCCCTCTTTA
CGC
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protein sequence of EsuBft4053_2a-0001

>EsuBft4053_2 ID=EsuBft4053_2|Name=EsuBft4053_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=54bp
MRNENRVRVAYGRKAVNRQEYKAAVQSSKGNSDVGCIPEVFCIVAHFGRM
RELL
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mRNA from alignment at Scaffold_441:95802..97322-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4053_2a-0001 ID=EsuBft4053_2a-0001|Name=EsuBft4053_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1521bp|location=Sequence derived from alignment at Scaffold_441:95802..97322- (Ectocarpus subulatus male Bft15b)
ATGAGAAACGAAAATCGAGTCCGCGTGGCTTATGGACGGAAAGCGGTCAA
TCGCCAGGAGTACAAAGCTGCTGTTCAAAGCAGCAAAGGAAACTCGGACG
TCGGGTGCATACCTGAGGTGTTCTGCATCGTAGCACACTTCGGGAGAATG
AGGGAGCTGCTGTAGGGGGACTTTCCACTGCCTCCCCTAGGTGCCGCCAC
GCCGCCGCTGTGATGGATGATGTTGGCGTCGATGTTCTTGACGGTACGGA
AATGATCCCGCATTGCAGGAGACAACCGTTGGATATCCTCAACACCACCC
CCGCCCACGGGAGGTGGAGCGGACGTTCCCGCCGCTCCACCTGCCCGTGC
CGCTGCCCCTCTCCCAGCCTCTCGTACCCCCATCGGTGCTCGTCGTCCAC
TACCCCTTCCTCCGCCCCCCCCTGCCCTCCCACCTCCTTGTGTTTCCCGT
CTAGCTCTGCCACTGCCTTGACCTATGCTTGCTGCTCCGACGGCGCCGCC
GCCGCCATAGCCGCAGCTTGAGCTATCGTCCCCCCTGTAACGGCACCTGC
CGTGCCTCCTGCCGCAGCTGTTGATCGAGTTTCAACACAGGGACTAGAAC
TTGCAGTGCCGCCTCGTCCTCGTCTTTGTTCCCCTTGTAACGCCGCCGCC
CCAGCCGCTAGTAGCGGTGCCGGTGGTTGAGGAACAGGTGCGGTAGATGG
TGGTGGGCTTGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCTGCTGTTACTGTTGCAGCTGGTTCTACTGTCCTTCCTGCTTCCGGCC
CCTCTGCTGCTGCAACTACCTCTGATGCAGCTGCTCCTACGCAACGTTCT
CTACGAGCTTTCCCCTTGCCTTTCCCCTTGGAAGACGGCGACTGGGTTGA
AGCGGTTGCGGAGTTATTTGATGCCCCACGAACGACATGTACTGCCTGGC
TCGTACTGCCTCTTCCGACGTCAGATATCGTCGACGGTGTACTCCTCTCA
CCCGCACATTCCTCGTCGTTCCCCATGTTGTCTTCGTTCGTAGCACCTTC
GCAACTGACTCGCTGACGCTTCCGTGTTGTTGTGTCTGCCCACCCCATGA
CCGTACGGAAAGCTGCTGCCTGCCGTGATTGGTTCTCGTCGTCGCTCTTT
TTCTCTGCGTTTGATTTCGTCCCGGGCTTTTTTGCTCCAGCCGCAGGCGT
TGATCCTTTCCTGCGACCCATGGTAAATCCTCTGTGGTGCTGTGCGTGTG
CTGTGGGTTGTACGTGTGTGTGCTGCGGTGAGAGAGCTGTGTCCTTTCTC
TCTGNCCGCTCTTTTTCTCTGCATATGACTTCGTCCCGGGCTTTTTTGCT
CCAGCCGCAGGCGTTGATCCTTTCCAGCGACCCATGGTAGATCCTCTGTG
GTGCTGTGCGTGTGCTGTGGATTGTACGTGTGTGTGCTGCGGTGAGAGAG
CTGTGTCCTCCCTCTTTACGC
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Coding sequence (CDS) from alignment at Scaffold_441:95802..97322-

>EsuBft4053_2a-0001 ID=EsuBft4053_2a-0001|Name=EsuBft4053_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=165bp|location=Sequence derived from alignment at Scaffold_441:95802..97322- (Ectocarpus subulatus male Bft15b)
ATGAGAAACGAAAATCGAGTCCGCGTGGCTTATGGACGGAAAGCGGTCAA
TCGCCAGGAGTACAAAGCTGCTGTTCAAAGCAGCAAAGGAAACTCGGACG
TCGGGTGCATACCTGAGGTGTTCTGCATCGTAGCACACTTCGGGAGAATG
AGGGAGCTGCTGTAG
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