Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7739.XP_002599408.1 |
| ProteomeId | EsuBft3934_3 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 128 |
| Hectar predicted targeting category | other localisation |
| Evalue | 4.93e-08 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48EZY@7711|Chordata |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Ribonuclease H protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft3934_3a-0001 ID=EsuBft3934_3a-0001|Name=EsuBft3934_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1281bp|location=Sequence derived from alignment at Scaffold_106:72214..74276+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGACATGGTCCCCACGCCGCGACCACTACCGGCTGCTGCAGACGACACA
CCACCGTCTGCCTCTGCGAGTTATCGGCTACCGGCGCAAACGAGGCACCT
ACCGGCAGCTGTCATACGCCCAGGCGCTGAAGAGGGTCGGCTGCCAGAGC
GTGGAGGCCACTGTCCGTCAACGGTGCCTGCTCTTTGCGGGGGCCATGGC
AAGACAGCCAGACGGGCGGCTTCCGAAACGGCTGATGTTCGGCGAGTTGG
TGGGAGGGGAGAACCCGGGCCGGGGAAGCCCGGAGCAGAACTGGCTGATA
TGCCTGAAGGACGACCTGAAGATGTTCGAAGCCAGACACGGCTCCACGCC
CGACAAGCGGAGCTTCTTCGGAATCCCGAAGCCAGACTGGGACGAGGCGG
CGAAGGTGGAGGGGGGGGTACCGTGGCACGCGGGGGTGCTACAGGGAGCT
GAGAGGTTTATGGCCTCTTGGCACAAGGGCGAGGAGAAGGCCAGCCGACA
ACGAGCCATCAAACGAGGAGACAGCGGGCCCAAAAAGAGTCTAGATACGG
CACCCATCTACGGGGCGGGAGGGGGGCGGGAGGAAACGGCGCGGGAAGAA
AGCAAGCGAGAAGAGACCGACCGCGTGACGTGACATGTTGCGGTTGAATT
TCAGCGACTAGTTTTTCTGTTGCCCTCTCCCCCGTTTGCTGTCGCGAACT
CTACGGATATCCCTGTCTCTGTGCGAGTTTGTTTATGTCCTCGTCTGTCT
TTTGATTTATTTCGTCTTTGTTTTGTTTTTTTCAGTGCTGCACGACTGAA
AAAAATAAAAAGTATGTGAGAAACAACGCTTCCAACGGGAAAGCAGCCCC
CTGTGGAAACCCCTCCGATCAGGCGGCTCGCGGCGCAACAGACCTCCACA
CCCAGCACGGGCTCTAGAGGGCGAACCAGAGGCTAAACTGCCCAGACAAC
TCGAGAGGTATTTAATGCATGGGATAACGGCCGGCACAGGTCGTGCTGAC
AGATGACCCGTCGGAGAGGTAGGGGGGGCAACCGGGCTGGTGGGGCTAAC
AACCCCAGAGGTCAACCGGCTACGCCACCTGCTACACCTCCAAACCAGCC
TAGGAGCTCTGTTACACCCAGAAGCGGGGGTATGCAGCCAGCATGGGACC
TTCGTCAGCTTACGGAAGGCCCGCTAACCCCGCGTACTCCAGTGGTCGAC
AACTCAGGGGGAGACATAACAAGTGAACGTCCACGGATCAGGAGCGGGAG
AGAGGGCAACTTAACCACTGAGGTGCGCACC back to topprotein sequence of EsuBft3934_3a-0001 >EsuBft3934_3 ID=EsuBft3934_3|Name=EsuBft3934_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=210bp
MTWSPRRDHYRLLQTTHHRLPLRVIGYRRKRGTYRQLSYAQALKRVGCQS
VEATVRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLI
CLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGA
ERFMASWHKGEEKASRQRAIKRGDSGPKKSLDTAPIYGAGGGREETAREE
SKREETDRVT back to topmRNA from alignment at Scaffold_106:72214..74276+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft3934_3a-0001 ID=EsuBft3934_3a-0001|Name=EsuBft3934_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2063bp|location=Sequence derived from alignment at Scaffold_106:72214..74276+ (Ectocarpus subulatus male Bft15b)
ATGACATGGTCCCCACGCCGCGACCACTACCGGCTGCTGCAGACGACACA
CCACCGTCTGCCTCTGCGAGTTATCGGCTACCGGCGCAAACGAGGCACCT
ACCGGCAGCTGTCATACGCCCAGGCGCTGAAGAGGGTCGGCTGCCAGAGC
GTGGAGGCCACTGTCCGTCAACGGTGCCTGCTCTTTGCGGGGGCCATGGC
AAGACAGCCAGACGGGCGGCTTCCGAAACGGCTGATGTTCGGCGAGTTGG
TGGGAGGGGAGAACCCGGGCCGGGGAAGCCCGGAGCAGAACTGGCTGATA
TGCCTGAAGGACGACCTGAAGATGTTCGAAGCCAGACACGGCTCCACGCC
CGACAAGCGGAGCTTCTTCGGAATCCCGAAGCCAGACTGGGACGAGGCGG
CGAAGGTGGAGGGGGGGGTACCGTGGCACGCGGGGGTGCTACAGGGAGCT
GAGAGGTTTATGGCCTCTTGGCACAAGGGCGAGGAGAAGGCCAGCCGACA
ACGAGCCATCAAACGAGGAGACAGCGGGCCCAAAAAGAGTCTAGATACGG
CACCCATCTACGGGGCGGGAGGGGGGCGGGAGGAAACGGCGCGGGAAGAA
AGCAAGCGAGAAGAGACCGACCGCGTGACGTGACATGTTGCGGTTGAATT
TCAGCGACTAGTTTTTCTGTTGCCCTCTCCCCCGTTTGCTGTCGCGAACT
CTACGGATATCCCTGTCTCTGTGCGAGTTTGTTTATGTCCTCGTCTGTCT
TTTGATTTATTTCGTCTTTGTTTTGTTTTTTTCAGTGCTGCACGACTGAA
AAAAATAAAAAGTATGTGAGAAACAACGCTTCCAACGGGAAAGCAGCCCC
CTGTGGAAACCCCTCCGATCAGGCGGCTCGCGGCGCAACAGACCTCCACA
CCCAGCACGGGCTCTAGAGGGCGAACCAGAGGCTAAACTGCCCAGACAAC
TCGAGAGGTATGTTAACACGATGCAAGGGCACATCAGGGTATGTTTTATA
CGCCCAGGTACACATGGTAGGGTGAGAAATTCAGACTCTTAGCTAGAGCA
TACCACACAGCGGCAGCACCAAAATCCACGAGGAAGCATCACACGCGAGC
CGACCTCTGCGCAAGCTTGGCGTGTTGCAGCCCAATTATGCTGCCGACGT
ATACCTAGGTCTCATTGCCACCTAATGCAAAAGGTTTGAGGCGATTTAGT
GCGTTAGAAAATGAGCATGGTGTGTTCAAAATTCAAATTTCAGGAGAGTC
TACGTCGGGGGGTTCGAACGCACGCTCTCGCATGTTGCGCATGTTTAGTC
CACTGGATACACGACCCCCATCCAAAGAAAAAATGGAAATGCTCGATACA
GTCCGGCCGCCACAAAAATTTATAGGAAATATGGACGTCGAAAGAGCAAG
TACGTCTGTCTTGAAGTTAAAATTTAGCTCGGTGCTTGCCATGGTGCGAG
TGAAACATGACCCGGGGCGCTCAGCTACGCGTACTCCAGACCGTTCATCA
GCAGTAGATTGGAACGGCGCAGATATGTCGAGTCGGGCATATAGTCTATA
GTGCGTAGATCGACAGCTTTCAGTCCGTCACGCTCTGAGGTACATAAGCA
TACCCAAACAGAGGATCATATGTTATGCATGGCTGTCAAGAGACAACGAT
AGAACCACACACATAGCATAGGTGTGCGCCTGCGTAGGCTGTACGTGTCA
CGTGACCTTTTGTAATTTTTGGTTGTATACCATGGCCAGGTATTTAATGC
ATGGGATAACGGCCGGCACAGGTCGTGCTGACAGATGACCCGTCGGAGAG
GTAGGGGGGGCAACCGGGCTGGTGGGGCTAACAACCCCAGAGGTCAACCG
GCTACGCCACCTGCTACACCTCCAAACCAGCCTAGGAGCTCTGTTACACC
CAGAAGCGGGGGTATGCAGCCAGCATGGGACCTTCGTCAGCTTACGGAAG
GCCCGCTAACCCCGCGTACTCCAGTGGTCGACAACTCAGGGGGAGACATA
ACAAGTGAACGTCCACGGATCAGGAGCGGGAGAGAGGGCAACTTAACCAC
TGAGGTGCGCACC back to topCoding sequence (CDS) from alignment at Scaffold_106:72214..74276+ >EsuBft3934_3a-0001 ID=EsuBft3934_3a-0001|Name=EsuBft3934_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=633bp|location=Sequence derived from alignment at Scaffold_106:72214..74276+ (Ectocarpus subulatus male Bft15b)
ATGACATGGTCCCCACGCCGCGACCACTACCGGCTGCTGCAGACGACACA
CCACCGTCTGCCTCTGCGAGTTATCGGCTACCGGCGCAAACGAGGCACCT
ACCGGCAGCTGTCATACGCCCAGGCGCTGAAGAGGGTCGGCTGCCAGAGC
GTGGAGGCCACTGTCCGTCAACGGTGCCTGCTCTTTGCGGGGGCCATGGC
AAGACAGCCAGACGGGCGGCTTCCGAAACGGCTGATGTTCGGCGAGTTGG
TGGGAGGGGAGAACCCGGGCCGGGGAAGCCCGGAGCAGAACTGGCTGATA
TGCCTGAAGGACGACCTGAAGATGTTCGAAGCCAGACACGGCTCCACGCC
CGACAAGCGGAGCTTCTTCGGAATCCCGAAGCCAGACTGGGACGAGGCGG
CGAAGGTGGAGGGGGGGGTACCGTGGCACGCGGGGGTGCTACAGGGAGCT
GAGAGGTTTATGGCCTCTTGGCACAAGGGCGAGGAGAAGGCCAGCCGACA
ACGAGCCATCAAACGAGGAGACAGCGGGCCCAAAAAGAGTCTAGATACGG
CACCCATCTACGGGGCGGGAGGGGGGCGGGAGGAAACGGCGCGGGAAGAA
AGCAAGCGAGAAGAGACCGACCGCGTGACGTGA back to top
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