EsuBft3915_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3915_4a-0001
Unique NameEsuBft3915_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:680796..681237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3915_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length29
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3915_4aEsuBft3915_4aEctocarpus subulatus male Bft15bgeneScaffold_340 680796..681237 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3915_4a-0001-exonEsuBft3915_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 680796..680877 +
EsuBft3915_4a-0001-exonagat-exon-42959Ectocarpus subulatus male Bft15bexonScaffold_340 681024..681237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3915_4a-0001-cdsEsuBft3915_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 680796..680877 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3915_4a-0001-exonagat-three_prime_utr-14762Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 681041..681237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3915_4a-0001EsuBft3915_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 680796..681040 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3915_4a-0001 ID=EsuBft3915_4a-0001|Name=EsuBft3915_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=296bp|location=Sequence derived from alignment at Scaffold_340:680796..681237+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCACCCGAGCACCACACAAGTCACACACGGTACAATCAAAAAGCAT
GTGGTGGGTACAGGGGACGGGGAAGGGGGGCGGGGTGGGGTGGGAATGAG
AATAAAAGCCATTGCTGCCGTACTATGTGCCCAAAAAAACAGTCACGCAC
GCTACAAGAAAATGTTCACCCGAAGGCTGCACAGGTCCGACGGTGCTGCA
GCGGTTTGTGTAAGACAAGGTGGGGCGCAACATTGACACTATGCAAAGCT
CTACAGTACACCGGAGTCGATCACCTAGAAAGCCAGACAATGTCCT
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protein sequence of EsuBft3915_4a-0001

>EsuBft3915_4 ID=EsuBft3915_4|Name=EsuBft3915_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=32bp
MFTRAPHKSHTVQSKSMWWVQGTGKGGGVGWE
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mRNA from alignment at Scaffold_340:680796..681237+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3915_4a-0001 ID=EsuBft3915_4a-0001|Name=EsuBft3915_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=442bp|location=Sequence derived from alignment at Scaffold_340:680796..681237+ (Ectocarpus subulatus male Bft15b)
ATGTTCACCCGAGCACCACACAAGTCACACACGGTACAATCAAAAAGCAT
GTGGTGGGTACAGGGGACGGGGAAGGGGGGCGGTGGGAATGAAAATAAAA
CCCATCGCTGCTGTACCATGTACCCAAAAAAAAAAGTCACACATGCTACC
AGAAAATGTTCACCCGAGCACCACACAAGTCAGGCGGTACAACCAATAAA
CACGTGGTGGGTAAAGGGGACGGGGAAGGGGTGGGGTGGGAATGAGAATA
AAAGCCATTGCTGCCGTACTATGTGCCCAAAAAAACAGTCACGCACGCTA
CAAGAAAATGTTCACCCGAAGGCTGCACAGGTCCGACGGTGCTGCAGCGG
TTTGTGTAAGACAAGGTGGGGCGCAACATTGACACTATGCAAAGCTCTAC
AGTACACCGGAGTCGATCACCTAGAAAGCCAGACAATGTCCT
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Coding sequence (CDS) from alignment at Scaffold_340:680796..681237+

>EsuBft3915_4a-0001 ID=EsuBft3915_4a-0001|Name=EsuBft3915_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=99bp|location=Sequence derived from alignment at Scaffold_340:680796..681237+ (Ectocarpus subulatus male Bft15b)
ATGTTCACCCGAGCACCACACAAGTCACACACGGTACAATCAAAAAGCAT
GTGGTGGGTACAGGGGACGGGGAAGGGGGGCGGGGTGGGGTGGGAATGA
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