EsuBft3915_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3915_3a-0001
Unique NameEsuBft3915_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:683697..684911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSK2
ProteomeIdEsuBft3915_3
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR006912
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length67
Hectar predicted targeting categorysignal peptide
Evalue3.37e-75
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
DescriptionPlant transposon protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0016788
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3915_3aEsuBft3915_3aEctocarpus subulatus male Bft15bgeneScaffold_340 683697..684911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3915_3a-0001EsuBft3915_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 683697..684911 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3915_3a-0001-exonagat-exon-42958Ectocarpus subulatus male Bft15bexonScaffold_340 683697..683918 -
EsuBft3915_3a-0001-exonEsuBft3915_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 684135..684138 -
EsuBft3915_3a-0001-exonagat-exon-42957Ectocarpus subulatus male Bft15bexonScaffold_340 684285..684430 -
EsuBft3915_3a-0001-exonagat-exon-42956Ectocarpus subulatus male Bft15bexonScaffold_340 684482..684519 -
EsuBft3915_3a-0001-exonagat-exon-42954Ectocarpus subulatus male Bft15bexonScaffold_340 684561..684807 -
EsuBft3915_3a-0001-exonagat-exon-42955Ectocarpus subulatus male Bft15bexonScaffold_340 684897..684911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3915_3a-0001-cdsEsuBft3915_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 683697..683918 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3915_3a-0001 ID=EsuBft3915_3a-0001|Name=EsuBft3915_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=672bp|location=Sequence derived from alignment at Scaffold_340:683697..684911- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCACACGACGTACTGGCCTGGCTGACCATACTCGGCAGCGGCAA
CTGCTTTGCAAGCATCTACCAGATGTCATGGGTGAGCGCGAAGGCCGTGC
AGACGATGTTCCACAAGTTCTGCAAGCACTTCCCACGGGAACTGTACGAT
GAACACATCTACCTCTCGTCGGAACAGAACGGCGAGCTGGACCACGTCAT
GGAGCAGTACGACCGGCTTGGGTTTTCGGGCGCGATGGGCTCCATGGATG
TAACTCACACCGGCATAGAGGGGGTTCCTACGATCGGGTACCAGGTCACG
ACGAACGACAAGACCATCGTCTGCTGGGATGCCGCGGTGGAGAAGATTCG
GACGGACAAGCAGTGCACGGAGAAGACCTTCGACATGTACAACGAGGATG
GCACGACGACAACGCTCAAGGGGTGCTACTTGCTAGTCGACAACGGTGAG
TGGAAAATCCTGATGGAACCCACCAAGTACCCGCTGAGCGAGAACGACAT
CCTCTTTTCGAAGAGGATGGAGAGCGTGCGCAAGGACGTGGAGTGCTTCT
TCGGCATCCTGAAGGGTCGATCCAGGATCCTTGTCTCGCCATGGCGTACC
ACGAGCAGGAGCGCATCGACTGTAAAGAAAGCGGTCTACCCACTAGACTA
CTTAGTCGCGGCGACTAAGTAG
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protein sequence of EsuBft3915_3a-0001

>EsuBft3915_3 ID=EsuBft3915_3|Name=EsuBft3915_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=223bp
MLPHDVLAWLTILGSGNCFASIYQMSWVSAKAVQTMFHKFCKHFPRELYD
EHIYLSSEQNGELDHVMEQYDRLGFSGAMGSMDVTHTGIEGVPTIGYQVT
TNDKTIVCWDAAVEKIRTDKQCTEKTFDMYNEDGTTTTLKGCYLLVDNGE
WKILMEPTKYPLSENDILFSKRMESVRKDVECFFGILKGRSRILVSPWRT
TSRSASTVKKAVYPLDYLVAATK
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mRNA from alignment at Scaffold_340:683697..684911-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3915_3a-0001 ID=EsuBft3915_3a-0001|Name=EsuBft3915_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1215bp|location=Sequence derived from alignment at Scaffold_340:683697..684911- (Ectocarpus subulatus male Bft15b)
ATGCTTCCACACGACGTACGGTACACGCAGCCACATCACATCACTAATAA
TATTGACAACGCGATATCCCGTGTGTACATTCCTTGTTGCACTTGCTGGT
GCAGGTACTGGCCTGGCTGACCATACTCGGCAGCGGCAACTGCTTTGCAA
GCATCTACCAGATGTCATGGGTGAGCGCGAAGGCCGTGCAGACGATGTTC
CACAAGTTCTGCAAGCACTTCCCACGGGAACTGTACGATGAACACATCTA
CCTCTCGTCGGAACAGAACGGCGAGCTGGACCACGTCATGGAGCAGTACG
ACCGGCTTGGGTTTTCGGGCGCGATGGGCTCCATGGATGTAACTCACACC
GGTTGGAGTAAGGCCCCTGCAACCTAGCCCGTTCCTACACAGGCATAGAG
GGGGTTCCTACGATCGGGTACCAGGTCACGGTTAATCACGCTGGCAGTGC
AATTGCCATGACCGAGGGCTTCACCGGCTAGACGAACGACAAGACCATCG
TCTGCTGGGATGCCGCGGTGGAGAAGATTCGGACGGACAAGCAGTGCACG
GAGAAGACCTTCGACATGTACAACGAGGATGGCACGACGACAACGCTCAA
GGGGTGCTACTTGCTAGTCGACAACGGGTAGCACAAGGTGGATGGAAATG
ACATGTTGTGATTTTGGGTGACCGACGGTAGTGTTTTTGAAGAGGTGTGT
GTCCGGCCTGACAGAAAGAGAAAGAGAGAGAGAAAGAGAGAAGAGAGATA
GAGAGAGAGAGAGAGCTGCCCAGTGAGGTATTTGTTGTCTCGGGAATCAA
AACCACGGTTGCTCGCTCTTGAAGTTGACATGAGGTATGTCATGGCTTTA
GGTTATTTGATTGGTATTTCCATTGCACGCCCCTTCGACCTCGAAGACCC
TGCCCCCTCCCCCTATTTCGCAGCTTGTTAACAGCGTCGAATCGAAACGT
CCCTCCCTCGGCCCTTCTCCCTTCCCCTTGTTTTTTGTTTCAGTGGAAAA
TCCTGATGGAACCCACCAAGTACCCGCTGAGCGAGAACGACATCCTCTTT
TCGAAGAGGATGGAGAGCGTGCGCAAGGACGTGGAGTGCTTCTTCGGCAT
CCTGAAGGGTCGATCCAGGATCCTTGTCTCGCCATGGCGTACCACGAGCA
GGAGCGCATCGACTGTAAAGAAAGCGGTCTACCCACTAGACTACTTAGTC
GCGGCGACTAAGTAG
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Coding sequence (CDS) from alignment at Scaffold_340:683697..684911-

>EsuBft3915_3a-0001 ID=EsuBft3915_3a-0001|Name=EsuBft3915_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=672bp|location=Sequence derived from alignment at Scaffold_340:683697..684911- (Ectocarpus subulatus male Bft15b)
ATGCTTCCACACGACGTACTGGCCTGGCTGACCATACTCGGCAGCGGCAA
CTGCTTTGCAAGCATCTACCAGATGTCATGGGTGAGCGCGAAGGCCGTGC
AGACGATGTTCCACAAGTTCTGCAAGCACTTCCCACGGGAACTGTACGAT
GAACACATCTACCTCTCGTCGGAACAGAACGGCGAGCTGGACCACGTCAT
GGAGCAGTACGACCGGCTTGGGTTTTCGGGCGCGATGGGCTCCATGGATG
TAACTCACACCGGCATAGAGGGGGTTCCTACGATCGGGTACCAGGTCACG
ACGAACGACAAGACCATCGTCTGCTGGGATGCCGCGGTGGAGAAGATTCG
GACGGACAAGCAGTGCACGGAGAAGACCTTCGACATGTACAACGAGGATG
GCACGACGACAACGCTCAAGGGGTGCTACTTGCTAGTCGACAACGGTGAG
TGGAAAATCCTGATGGAACCCACCAAGTACCCGCTGAGCGAGAACGACAT
CCTCTTTTCGAAGAGGATGGAGAGCGTGCGCAAGGACGTGGAGTGCTTCT
TCGGCATCCTGAAGGGTCGATCCAGGATCCTTGTCTCGCCATGGCGTACC
ACGAGCAGGAGCGCATCGACTGTAAAGAAAGCGGTCTACCCACTAGACTA
CTTAGTCGCGGCGACTAAGTAG
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