EsuBft3915_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3915_2a-0001
Unique NameEsuBft3915_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:685721..686439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3915_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length63
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3915_2aEsuBft3915_2aEctocarpus subulatus male Bft15bgeneScaffold_340 685721..686439 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3915_2a-0001-exonEsuBft3915_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 685721..686094 -
EsuBft3915_2a-0001-exonagat-exon-42953Ectocarpus subulatus male Bft15bexonScaffold_340 686177..686439 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3915_2a-0001-exonagat-three_prime_utr-14761Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 685721..685985 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3915_2a-0001-cdsEsuBft3915_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 685986..686094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3915_2a-0001EsuBft3915_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 685986..686439 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3915_2a-0001 ID=EsuBft3915_2a-0001|Name=EsuBft3915_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=637bp|location=Sequence derived from alignment at Scaffold_340:685721..686439- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAGCAAGAAGTACTCCGATGACACCATTCGCAGCCTCAAGGTGCT
CCCGTTCGTCAAGAGCAAGATGGTCAAGGGGCTTTTGAAGGAGAAGGAAG
ACTACTACATGGCGGCCAGTGACACAGACATCGAGTACGGCCACATGGCG
TTCTGGAAGGACAACAAGAAAAAAAGGCTGCCTACGTGGCACGCCTTGGT
GTTGGATGTTGCTCTTTTGCAACCATCCTCTGCATTCATGGAACGAGTGT
TTTCCATCCTGCGGGGCCGGGCCCAGAGTAGCAGCTCAGCAGAGAAGACG
GGTAGCGCCGAAGAGGCCAACAGCGGCAGCGGTAGCGACCAGAGCGATGG
CAGCGATGAAGAAAGCGACTGATGGCCTGTGTTTCACTTTCGTGTAGATG
TCTTACTTGTTCGTAGTTGGTGGGTCAGTACCTGTCCAGATTTGTTTGTT
TTTGCCCCGACGTGAGCGTGCATGCCATGCGTAACGTCGAAGTATCGAAG
CATCATAGTATTCCATTTCGTTGTTGATTTGTTTGATAACTGAGGGCTCG
GAATATTGCATGTACACACCAGCGTAACATGCAAGATGTAGTTTGTAGAA
AAATAAGAGAAGGACGAAGGACACATCATTTCGCTTT
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protein sequence of EsuBft3915_2a-0001

>EsuBft3915_2 ID=EsuBft3915_2|Name=EsuBft3915_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=123bp
MKSKKYSDDTIRSLKVLPFVKSKMVKGLLKEKEDYYMAASDTDIEYGHMA
FWKDNKKKRLPTWHALVLDVALLQPSSAFMERVFSILRGRAQSSSSAEKT
GSAEEANSGSGSDQSDGSDEESD
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mRNA from alignment at Scaffold_340:685721..686439-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3915_2a-0001 ID=EsuBft3915_2a-0001|Name=EsuBft3915_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=719bp|location=Sequence derived from alignment at Scaffold_340:685721..686439- (Ectocarpus subulatus male Bft15b)
ATGAAAAGCAAGAAGTACTCCGATGACACCATTCGCAGCCTCAAGGTGCT
CCCGTTCGTCAAGAGCAAGATGGTCAAGGGGCTTTTGAAGGAGAAGGAAG
ACTACTACATGGCGGCCAGTGACACAGACATCGAGTACGGCCACATGGCG
TTCTGGAAGGACAACAAGAAAAAAAGGCTGCCTACGTGGCACGCCTTGGT
GTTGGATGTTGCTCTTTTGCAACCATCCTCTGCATTCATGGAACGAGTGT
TTTCCATCCTGCGGTGTTGCTTTAATCTCTAATGAACGGCAGGAGCACGT
GTACAGCGACCGTATTTGCGCTTCCGCACTGCTCAAGTACAACAGGGGCC
GGGCCCAGAGTAGCAGCTCAGCAGAGAAGACGGGTAGCGCCGAAGAGGCC
AACAGCGGCAGCGGTAGCGACCAGAGCGATGGCAGCGATGAAGAAAGCGA
CTGATGGCCTGTGTTTCACTTTCGTGTAGATGTCTTACTTGTTCGTAGTT
GGTGGGTCAGTACCTGTCCAGATTTGTTTGTTTTTGCCCCGACGTGAGCG
TGCATGCCATGCGTAACGTCGAAGTATCGAAGCATCATAGTATTCCATTT
CGTTGTTGATTTGTTTGATAACTGAGGGCTCGGAATATTGCATGTACACA
CCAGCGTAACATGCAAGATGTAGTTTGTAGAAAAATAAGAGAAGGACGAA
GGACACATCATTTCGCTTT
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Coding sequence (CDS) from alignment at Scaffold_340:685721..686439-

>EsuBft3915_2a-0001 ID=EsuBft3915_2a-0001|Name=EsuBft3915_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=372bp|location=Sequence derived from alignment at Scaffold_340:685721..686439- (Ectocarpus subulatus male Bft15b)
ATGAAAAGCAAGAAGTACTCCGATGACACCATTCGCAGCCTCAAGGTGCT
CCCGTTCGTCAAGAGCAAGATGGTCAAGGGGCTTTTGAAGGAGAAGGAAG
ACTACTACATGGCGGCCAGTGACACAGACATCGAGTACGGCCACATGGCG
TTCTGGAAGGACAACAAGAAAAAAAGGCTGCCTACGTGGCACGCCTTGGT
GTTGGATGTTGCTCTTTTGCAACCATCCTCTGCATTCATGGAACGAGTGT
TTTCCATCCTGCGGGGCCGGGCCCAGAGTAGCAGCTCAGCAGAGAAGACG
GGTAGCGCCGAAGAGGCCAACAGCGGCAGCGGTAGCGACCAGAGCGATGG
CAGCGATGAAGAAAGCGACTGA
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