EsuBft3905_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3905_2a-0001
Unique NameEsuBft3905_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:646265..647821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3905_2
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsIPR007889
Protein domainsSignalP-TM
Protein domainsIPR009057
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsCoil
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length76
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0003677
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3905_2aEsuBft3905_2aEctocarpus subulatus male Bft15bgeneScaffold_630 646265..647821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3905_2a-0001EsuBft3905_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 646265..646770 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3905_2a-0001-exonagat-exon-15317Ectocarpus subulatus male Bft15bexonScaffold_630 646265..646439 +
EsuBft3905_2a-0001-exonagat-exon-15316Ectocarpus subulatus male Bft15bexonScaffold_630 646565..646825 +
EsuBft3905_2a-0001-exonEsuBft3905_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 647491..647821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3905_2a-0001-cdsEsuBft3905_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 646265..646439 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3905_2a-0001-exonagat-three_prime_utr-14745Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 646771..646825 +
EsuBft3905_2a-0001-exonagat-three_prime_utr-14746Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 647491..647821 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3905_2a-0001 ID=EsuBft3905_2a-0001|Name=EsuBft3905_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=767bp|location=Sequence derived from alignment at Scaffold_630:646265..647821+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCGCATCTTCGCCCTCGTTGGCCTCCTGCTGCTAAGCATGGGTCG
GTGTAGAGTGAACGCGGAGGCTGCTGCGAAGGCCTGTGAAGCGGTCCGCA
CCGGTAGCATGTCACGCAACGCTGCTGCTGCTGCCTACGGGGTCAACAAG
ACGTCGCTCTCGCGGCGGCTGAGCGACCTCACGGAGCGTGTGAGACAGCT
CTTCAACGACGGTCGACCGATCCCATGGACCCCTGACAAGGGCCCGGGGA
GGAGCTGGCTTGAGGGCTTCCTCGGACGGCACGAGCGCATCGGCCTTCGA
CTCGCCCGTATCTACGAGTCCAAGAGGGTGACCTCCGCGGAAGATGAACG
TCTGCACAAGTTCTACGACTTCTGGGGCTAGTTCCTCGACGAGCACCAGC
CGGCGGCCGACCATGTCTGGAACACGGACGAGTCAGGTGGCACCGTTCAA
GGTACGCAGGGACAGCGGGTCGTGGCGGAACGGGGGCAGCCGGTGGTCGC
CCAGATGCGCTCCACCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNN
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protein sequence of EsuBft3905_2a-0001

>EsuBft3905_2 ID=EsuBft3905_2|Name=EsuBft3905_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=126bp
MRRIFALVGLLLLSMGRCRVNAEAAAKACEAVRTGSMSRNAAAAAYGVNK
TSLSRRLSDLTERVRQLFNDGRPIPWTPDKGPGRSWLEGFLGRHERIGLR
LARIYESKRVTSAEDERLHKFYDFWG
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mRNA from alignment at Scaffold_630:646265..647821+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3905_2a-0001 ID=EsuBft3905_2a-0001|Name=EsuBft3905_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1557bp|location=Sequence derived from alignment at Scaffold_630:646265..647821+ (Ectocarpus subulatus male Bft15b)
ATGCGGCGCATCTTCGCCCTCGTTGGCCTCCTGCTGCTAAGCATGGGTCG
GTGTAGAGTGAACGCGGAGGCTGCTGCGAAGGCCTGTGAAGCGGTCCGCA
CCGGTAGCATGTCACGCAACGCTGCTGCTGCTGCCTACGGGGTCAACAAG
ACGTCGCTCTCGCGGCGGCTGAGCGGTGAGTGTGCCATGGATGCGCGGGT
GGGCCCCGGGGCTGTCATGACCGCAGCAGAGGAGGATGCGCTTGAAGATG
TTCTGCTGTTCACTGGTCGGAACTATAGACTATTCCGCTCACCACCGCAG
ACCTCACGGAGCGTGTGAGACAGCTCTTCAACGACGGTCGACCGATCCCA
TGGACCCCTGACAAGGGCCCGGGGAGGAGCTGGCTTGAGGGCTTCCTCGG
ACGGCACGAGCGCATCGGCCTTCGACTCGCCCGTATCTACGAGTCCAAGA
GGGTGACCTCCGCGGAAGATGAACGTCTGCACAAGTTCTACGACTTCTGG
GGCTAGTTCCTCGACGAGCACCAGCCGGCGGCCGACCATGTCTGGAACAC
GGACGAGTCAGGTGAGCAACACAGGGTAGTGGTGTGGTGTCGGCAGTAGC
TGCTGTGTGACGGATTGTGAGCTTGTTTCTACATGTGAGCTGCTGTGCAC
AACGTGATAAATAGGCAGAGTTTTGCGGCTGCTGTATTAAAAAATCGAGT
TTTCCCGCAGCGGGTGGTCTCCGCAGAGGACCACTGTTACATGAACGCGC
AATTGCTGTCGTGTACGCTAGCTACTGTTTGGGATCCTTGTTCATGTCGG
CAGCATGCACACACGTTGCTTCGAGAGCAGTTTCGCATGCTGATACACAT
GATTTTTGCGCAGCACACACATGGGATTGATGTGTGGGAAGGAGAAGCTT
GTCGCGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTACTACAGTG
GCCCCTGTGTGGAGTTTTTTTTTCTCGAGGCTCAAGACGAGAAGGCTGTA
TTCTAGACTTTTATAAAGCGATGGCCCCAGCTGTGCAGCTGCGCCGGTAC
ATTTTGCATGTGAGGACATCTCACCGTGTTCGCCGTTCTCTTCCCCGCCC
GCTCCCCCACCCATTTTAGGCTGGACGTTGGTGGTGCGTGAAAGCGCCTT
TGTCCCCTGTACTGAATCTCCTTCTGCTTCTCCCTCCCCCCTACTCCCGC
TTTGCCGCCGCAAAAAATCGTTGCAGGTGGCACCGTTCAAGGTACGCAGG
GACAGCGGGTCGTGGCGGAACGGGGGCAGCCGGTGGTCGCCCAGATGCGC
TCCACCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_630:646265..647821+

>EsuBft3905_2a-0001 ID=EsuBft3905_2a-0001|Name=EsuBft3905_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=381bp|location=Sequence derived from alignment at Scaffold_630:646265..647821+ (Ectocarpus subulatus male Bft15b)
ATGCGGCGCATCTTCGCCCTCGTTGGCCTCCTGCTGCTAAGCATGGGTCG
GTGTAGAGTGAACGCGGAGGCTGCTGCGAAGGCCTGTGAAGCGGTCCGCA
CCGGTAGCATGTCACGCAACGCTGCTGCTGCTGCCTACGGGGTCAACAAG
ACGTCGCTCTCGCGGCGGCTGAGCGACCTCACGGAGCGTGTGAGACAGCT
CTTCAACGACGGTCGACCGATCCCATGGACCCCTGACAAGGGCCCGGGGA
GGAGCTGGCTTGAGGGCTTCCTCGGACGGCACGAGCGCATCGGCCTTCGA
CTCGCCCGTATCTACGAGTCCAAGAGGGTGACCTCCGCGGAAGATGAACG
TCTGCACAAGTTCTACGACTTCTGGGGCTAG
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