Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FSK2 |
| ProteomeId | EsuBft3838_2 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 92 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.14e-12 |
| EggNOG OGs | 2E2RF@1|root,2S9YA@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Plant transposon protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft3838_2a-0001 ID=EsuBft3838_2a-0001|Name=EsuBft3838_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=921bp|location=Sequence derived from alignment at Scaffold_70:247916..250336- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGAGTTTCAGCATCAAAGCCGCCCTGGCCGCGGCAAGCGCCCTCCA
GAGCACGAATCAGGCCATGAGCGCTAACCTTCGAGATGCGCTGGCGGGAG
AGTCGGAGGATGGGTGGTCAGACGAGGAAGAGGAGGAGGAGGAAGATTTC
GGCCCGTGTGACCGTGAAACGAGGGAGCGCCCGGACTACAGCTCGAGTGC
ATGGGGCGTACGACTGGCTAACTTGGAGAGCCTGCGGATCGCCGGCAGGC
TCGTCCCCTCCAGCAGGGAAGCGAAGGCTTTCCGCTCGGACTTCAGGGTT
CCGTACGAGTTTTCCCGGCACTTCGTCGACCTCGTCAGAACCGTCTTCCC
GACTGCTACCCGCGACGTTGCCGGGCGCCAGTGTGTTCCCTTGGAGCTCA
AGGTTCTCAAAAAGGTCGCGGGGGAGTACGGCGACATGGGATGTCCGGGG
GCGGTGGCTTCGGTGGACTGCACCCACATTTCCTGGCCGGCCTGTCCTTT
CTCGGAGACTAACACCCACAAGGGCAAGGAGGGTGATACGACCCTCGTGT
ACGAAGCGTCCTGCCACCACTCTGGTCGNCCTTTCTCGGAGACTAACACC
CACAAGGGCAAGGAGGGTTATACGACCCTCGTGTACGAAGCGTCCTGCGA
CCACTCTGGTCGCATCCTCTCGTCAACGAAGGGGTTCCCTGGGGCTGAAA
ACGACAAGACCGTGGTGAAGCGCGACCTGTCCGTACTTCGAATGCGGGAG
GAGGAGCCTTGGGCGAGCTACAAGTTCGTTCTCTTCGACCTGGAAGGCAA
CACTACGGAGCACACGGGAAAATGGCTGATCGTGGATGGGGGGTACCATC
GGGTGAGTTCCGTGTGGGTGTCGTACATGGCGAGGGTGCAGACTACGAGG
GAAATATGTACTGGTGCGTAG back to topprotein sequence of EsuBft3838_2a-0001 >EsuBft3838_2 ID=EsuBft3838_2|Name=EsuBft3838_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=306bp
MASFSIKAALAAASALQSTNQAMSANLRDALAGESEDGWSDEEEEEEEDF
GPCDRETRERPDYSSSAWGVRLANLESLRIAGRLVPSSREAKAFRSDFRV
PYEFSRHFVDLVRTVFPTATRDVAGRQCVPLELKVLKKVAGEYGDMGCPG
AVASVDCTHISWPACPFSETNTHKGKEGDTTLVYEASCHHSGRPFSETNT
HKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMRE
EEPWASYKFVLFDLEGNTTEHTGKWLIVDGGYHRVSSVWVSYMARVQTTR
EICTGA back to topmRNA from alignment at Scaffold_70:247916..250336- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft3838_2a-0001 ID=EsuBft3838_2a-0001|Name=EsuBft3838_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2421bp|location=Sequence derived from alignment at Scaffold_70:247916..250336- (Ectocarpus subulatus male Bft15b)
ATGGCGAGTTTCAGCATCAAAGCCGCCCTGGCCGCGGCAAGCGCCCTCCA
GAGCACGAATCAGGCCATGAGCGCTAACCTTCGAGATGCGCTGGCGGGAG
AGTCGGAGGATGGGTGGTCAGACGAGGAAGAGGAGGAGGAGGAAGATTTC
GGCCCGTGTGACCGTGAAACGAGGGAGCGCCCGGACTACAGCTCGAGTGC
ATGGGGCGTACGACTGGCTAACTTGGAGAGCCTGCGGATCGCCGGCAGGC
TCGTCCCCTCCAGCAGGGAAGCGAAGGCTTTCCGCTCGGACTTCAGGGTT
CCGTACGAGTTTTCCCGGCACTTCGTCGACCTCGTCAGAACCGTCTTCCC
GACTGCTACCCGCGACGTTGCCGGGCGCCAGTGTGTTCCCTTGGAGCTCA
AGGTAGGTGCGCTTGACGCTGGTGATCGGTTAGAAGCAGCAGCAGTCGGG
CCTTTTAGATCCCCACCATGTATGTGGGTTCGGTAGAGGTCGCAAAGCTT
GGCGGTAATATGTTCCGTGCGCGTCTGCACGCTGTCTCATCGGGTGGCAC
GTGTTGTTCGAAAAGATCGTTTACTCTCTCCGCAGCAGCCTCTTTCCGCT
ACGCCCGAGCAAAGGCGTGGGCGGAAGCCGTTGTCGGCAGCCTCTGCCTC
TTCTAACTACTGCTTGCTGTATGTATTGTGCAGCAACCAAGGTTTTGCAA
GGCGTGTTATTTTTGGGCCTATTTTTTTAGTGAGTTTCAACACATGCGGC
AGCGGCTACCTGCCCTCTGCGTTAGCACGCGCCTGGCTACATACGAACCT
GCTGCAAAGCTGGCATTTCTCTCTAGGGTAGCAGGGTAAGACCCTAGGTT
ACTGGTATTGTAGTAGCAGTGATACATGGCCTTGCTGTTGTAGATTATGT
ATCAGATCTACAGTGTATCCTTTAACAAGCAGTGAATGGTTTCATGTCCC
TTTCATGTTTCTTTCGCGCCCCCCCGCCGGAATGCCAATGTGACGTGCGT
GGGTTTTTATCCTCTGCTCCAGCAGATAGTCAAAAACGCGGTTTGCATCC
GCTGTCCAACCGTGTTTTTTGTTCGGGCCGAGTAGAAAAGGCGTGACGCA
GCGGCGTTACGCCTGTGCTTACACACAGCTGTGTCGTTCCAACGAGATGT
AGTCACTTTGACTTGTGCACAACCTGAGACAGGCAGAGAACCCGCCGCGA
CCGGCAAAAGAACACGGCACCTTATTTCCTCATCTCAACACCTAGCCGAG
CACCTTTTCCAAATATCTTCCCATGGGAGTCCATCGACGCGAATACCTAG
GTGCCATGTGGCGGGGGGAAATGCTGGGGAAATGCTCGGAAAGCGCCGCG
GCAGTAGCAGTAGTGGCTTGCGCAGGCGTGGCCGAAAATTGCCACTGCAG
GAGTTTTTCGACACGTCTTCCCCCCTCACGATTGTCATGAATGACGGGCG
GCATCTACGCAACACGCGAGAGCACTGATGTCGTAGCTGCCCCCACCCCT
TCCTGTAAATTCCTTTCCTGTAGCTTTGGTGCGCGTGCGTCGTGAAACAG
CAGCAGTATATGTACGATGATGCTGGCTCGCATCCGCGACCTTATTTCTG
TGGTATGTTATTTGGGCCCGCCCGAGCACGTCACACCTGGTTAGCCTGGC
ATGTCAAAACATAACTGCGCTACCTTCCGCTCATATCGCATGCAACCCTC
TCCAATCAAAACACTCTGCCCTTCCTGTACTTGCAAGCAGGTGCTGGGGG
TGCTGCAAGTCTTGGGAAGAGGGAACTGCTTCGCGGATGTCGCTCAGCTC
TCTCTCATGAGCCGGCAAACGGCGGAGAAATCGTTCCACCGGTTCTGCGA
CTGCTTCTCATCGGGGTTGTGGCATCAGTGGGTGACGCTGCCGGAGGGGT
AGGTTCTCAAAAAGGTCGCGGGGGAGTACGGCGACATGGGATGTCCGGGG
GCGGTGGCTTCGGTGGACTGCACCCACATTTCCTGGCCGGCCTGTCCTTT
CTCGGAGACTAACACCCACAAGGGCAAGGAGGGTGATACGACCCTCGTGT
ACGAAGCGTCCTGCCACCACTCTGGTCGNCCTTTCTCGGAGACTAACACC
CACAAGGGCAAGGAGGGTTATACGACCCTCGTGTACGAAGCGTCCTGCGA
CCACTCTGGTCGCATCCTCTCGTCAACGAAGGGGTTCCCTGGGGCTGAAA
ACGACAAGACCGTGGTGAAGCGCGACCTGTCCGTACTTCGAATGCGGGAG
GAGGAGCCTTGGGCGAGCTACAAGTTCGTTCTCTTCGACCTGGAAGGCAA
CACTACGGAGCACACGGGAAAATGGCTGATCGTGGATGGGGGGTACCATC
GGGTGAGTTCCGTGTGGGTGTCGTACATGGCGAGGGTGCAGACTACGAGG
GAAATATGTACTGGTGCGTAG back to topCoding sequence (CDS) from alignment at Scaffold_70:247916..250336- >EsuBft3838_2a-0001 ID=EsuBft3838_2a-0001|Name=EsuBft3838_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=921bp|location=Sequence derived from alignment at Scaffold_70:247916..250336- (Ectocarpus subulatus male Bft15b)
ATGGCGAGTTTCAGCATCAAAGCCGCCCTGGCCGCGGCAAGCGCCCTCCA
GAGCACGAATCAGGCCATGAGCGCTAACCTTCGAGATGCGCTGGCGGGAG
AGTCGGAGGATGGGTGGTCAGACGAGGAAGAGGAGGAGGAGGAAGATTTC
GGCCCGTGTGACCGTGAAACGAGGGAGCGCCCGGACTACAGCTCGAGTGC
ATGGGGCGTACGACTGGCTAACTTGGAGAGCCTGCGGATCGCCGGCAGGC
TCGTCCCCTCCAGCAGGGAAGCGAAGGCTTTCCGCTCGGACTTCAGGGTT
CCGTACGAGTTTTCCCGGCACTTCGTCGACCTCGTCAGAACCGTCTTCCC
GACTGCTACCCGCGACGTTGCCGGGCGCCAGTGTGTTCCCTTGGAGCTCA
AGGTTCTCAAAAAGGTCGCGGGGGAGTACGGCGACATGGGATGTCCGGGG
GCGGTGGCTTCGGTGGACTGCACCCACATTTCCTGGCCGGCCTGTCCTTT
CTCGGAGACTAACACCCACAAGGGCAAGGAGGGTGATACGACCCTCGTGT
ACGAAGCGTCCTGCCACCACTCTGGTCGNCCTTTCTCGGAGACTAACACC
CACAAGGGCAAGGAGGGTTATACGACCCTCGTGTACGAAGCGTCCTGCGA
CCACTCTGGTCGCATCCTCTCGTCAACGAAGGGGTTCCCTGGGGCTGAAA
ACGACAAGACCGTGGTGAAGCGCGACCTGTCCGTACTTCGAATGCGGGAG
GAGGAGCCTTGGGCGAGCTACAAGTTCGTTCTCTTCGACCTGGAAGGCAA
CACTACGGAGCACACGGGAAAATGGCTGATCGTGGATGGGGGGTACCATC
GGGTGAGTTCCGTGTGGGTGTCGTACATGGCGAGGGTGCAGACTACGAGG
GAAATATGTACTGGTGCGTAG back to top
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