EsuBft3820_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3820_2a-0001
Unique NameEsuBft3820_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:63488..66042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G1R9
ProteomeIdEsuBft3820_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length223
Hectar predicted targeting categoryother localisation
Evalue6.83e-36
EggNOG OGs2AISC@1|root,2RZ5E@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionTRAF-type zinc finger
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3820_2aEsuBft3820_2aEctocarpus subulatus male Bft15bgeneScaffold_373 63488..66042 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3820_2a-0001-exonagat-exon-67095Ectocarpus subulatus male Bft15bexonScaffold_373 63488..65475 -
EsuBft3820_2a-0001-exonEsuBft3820_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 65792..66042 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3820_2a-0001-exonagat-three_prime_utr-14540Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_373 63488..65255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3820_2a-0001-cdsEsuBft3820_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 65256..65475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3820_2a-0001EsuBft3820_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 65256..66042 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3820_2a-0001 ID=EsuBft3820_2a-0001|Name=EsuBft3820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2239bp|location=Sequence derived from alignment at Scaffold_373:63488..66042- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGATCGGACAACAACTGTGAGTACCCGAAGCCAGGAGCAACGAACTT
GCTCCCTCCCTCTTTTATTTCTCTGTTCCTCCATAACAATGGTCGACTCC
ACCGGCAAGTTGTCTCGTGTGAACCAGGATGCGGTGAAACTTTGCTGGAA
CGGGATGCAAAAGCGCACGCGGCATACCGACGTGTTTTGCGTGTCGTGAC
GTGTTGGATGGCTGCATGCGGGAAGCGCATGCCGGCGAAGGGTGTTTCAA
GGCATCTAGACGAAGACTGCGTCGCGCACCGAGCCTGGATGCGCATGGCT
GAAGCCGGACACGAACTCCAAGAGAGTTGCACGTGCCCTCACTGCGGGGA
AACTGTGCGGCGCTCCCAGCTGACGCTACACTTCCAGTACCAGTGTCATT
GGTTCAAGGAGCAGCGCCGCAAAGCCGGTTGCGGTGCCTGGGTTCCGCGG
CAATGTCGAGCAGAACAGTAGGGACGATTTTGCCGGGATTCGAGCGCGGT
TCGCAGACGCCGGCGTCTGGCGAGGGCCAGGGCCTGTTTGTGTACCCCCG
TGACCACCCACGGAGGTTGCCGTGCCCACCCACGGTACGATGTCTGTATG
GGGACCATGTTAACCCAGAGGACCGATGCAGACGATATATATATCCTTGA
TTAACACACACGTGCTGTTCCAGCACGGACCGAAGTCAGTACAGGTCCTG
TTTCAGTGAACACAAGCGCGGGCTCTCACGAGGGGGACCGCACTTGGACC
CCCAACAGTATACCCCCCGCACACATGTTCTATGCAGATCGAATCTTGTA
TCCAAGTACCCCAAACAGCCCCCCTGCTTGATACAATATACGATCTGGAA
GTCCAAGGTGGATAATCTTCCTACCAATACAAAAACACAAATAACCACTC
GAGAAACATCCTCTACAAAACTGGTTACGCATTTTACGCAAAGCGTCTCC
ATCAGTATATTCATGAATCCAATGTATTCTCAAACCGTCAAAACAAAAGA
ATCATCCTCAGAAGAGTACCCAACAAATATCTGCGCTACATCAGAAAAGC
GTCAGAACGGTGACGGACAAATCTGGAAAAACAGCTTCAAAAGAGTTGAC
ACAACGTCCTCAAATAACACAAAGTTTCAAGTTCTCGACCAATCAAAACG
AGCATTCGGAAAGCACAAGGGCCCCAACCATTACTCGTCAAAACATGTCA
AACCCTTCCTCCAATGTAGCATCCAAAGACCAAACCCTTTAACAGCGTGC
ACATGCTATCGGTGCCTCAGCTGTTGTCCAAGAGACGATAGGAAACACAC
GCCAAAATCCATGCAAACAGCCCGCCTGCTGCAACATCTCCCGAAACATG
CAAATTCTGTGCCACCCGTATCTCACTGGTTTTGCCACAAGACAGCAATA
TCAATACCAATATCAACACGTAACAGCCCCCCAGCTGGAATATTTCCCCG
AAACATACAGATAAATCTGCCTGCGCTTTCTTCCCTCCCTTTCCAACCAA
CAGAGGATCTCAAAACATCAAAGCGTACGAAACAGCCCCTAAGCTGAAAC
ATGCCCTGCATACATATGAAAAACACATAGCATTCGCTAGTGTTGCGTCT
GGAATCATGGCAACATATTTCCTCCCCCCCTGATTCTTGACCCAAAACAC
AGCAGAAGGAAGAAAACGCCAAGAAAATCACGACGAAACAAATCCAACTT
GAACAGAACTCGACGAAAGCACTCTGCTCTGCTGGTACTGCGGCTAGAAA
CATGGTACACGAATCCCCCCCGCATGGTTCTTGACAGCAGCACAAACAGC
AGTTCGACATTTGTCATTGAATTTCGCATCTTACACAAATTCGGGTTCGA
AACACAACAAGTCAAAACCCAGAAACAAAAATTACTCAACCACAAACAGG
GATGCCGTACACGTTAACGCATTGTCTCTCGGATGCGATTCCTGGATGAA
TTTATCGTCTTCGGCGCAACGGGAAGAAACCCGACATGGAACAACAAAAA
ATAAAAACCACAAAGAACATAACAACGTGAAGTCAACATGCCAATACCTC
CACACAAAACCCAAACAATTCGTTAATATTTCACATGGTCTCCAATTTGG
CGCAAATATGGTGAGGTCGTTGGTGCCACCATATTCTCGCCCTGCTCGGT
CGATTCGAGGGTGTCCACCGGAGCCATATATCCGTCTTCCGCTTCGCCTT
TACTCCCCAAATTACGCTGCGCCCGCCCCGCGGTAGCTT
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protein sequence of EsuBft3820_2a-0001

>EsuBft3820_2 ID=EsuBft3820_2|Name=EsuBft3820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=156bp
MRSDNNCEYPKPGATNLLPPSFISLFLHNNGRLHRQVVSCEPGCGETLLE
RDAKAHAAYRRVLRVVTCWMAACGKRMPAKGVSRHLDEDCVAHRAWMRMA
EAGHELQESCTCPHCGETVRRSQLTLHFQYQCHWFKEQRRKAGCGAWVPR
QCRAEQ
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mRNA from alignment at Scaffold_373:63488..66042-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3820_2a-0001 ID=EsuBft3820_2a-0001|Name=EsuBft3820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2555bp|location=Sequence derived from alignment at Scaffold_373:63488..66042- (Ectocarpus subulatus male Bft15b)
ATGAGATCGGACAACAACTGTGAGTACCCGAAGCCAGGAGCAACGAACTT
GCTCCCTCCCTCTTTTATTTCTCTGTTCCTCCATAACAATGGTCGACTCC
ACCGGCAAGTTGTCTCGTGTGAACCAGGATGCGGTGAAACTTTGCTGGAA
CGGGATGCAAAAGCGCACGCGGCATACCGACGTGTTTTGCGTGTCGTGAC
GTGTTGGATGGCTGCATGCGGGAAGCGCATGCCGGCGAAGGGTGTTTCAA
GGTGCAGCTGCTGATTGTAACACGCATGGGGGCATAGGATTGACTCGTGT
GAGAGGAAGCGCGTGTGACGAACAAGTAATATTTTGACCACAAATTGTGT
ATTGTGCAGAGTGGCAGTCTAGACACCCATCACCTTCACCAATCCTAATG
GTGCCTTTCCAGCCAGGAGTTTCTTGTTTTTTTCGTTTTCACGGTCGTAA
GAGGCATGGAACACGTCGTTCCCAAATCGGCCTGCCCTTATCACCTAACG
GTGAGTCGCGTCCATACTTCGAAAATAGTTGCCCCTACTCAAGGCGTCTT
CTCGTCTGCACTGGCAGGCATCTAGACGAAGACTGCGTCGCGCACCGAGC
CTGGATGCGCATGGCTGAAGCCGGACACGAACTCCAAGAGAGTTGCACGT
GCCCTCACTGCGGGGAAACTGTGCGGCGCTCCCAGCTGACGCTACACTTC
CAGTACCAGTGTCATTGGTTCAAGGAGCAGCGCCGCAAAGCCGGTTGCGG
TGCCTGGGTTCCGCGGCAATGTCGAGCAGAACAGTAGGGACGATTTTGCC
GGGATTCGAGCGCGGTTCGCAGACGCCGGCGTCTGGCGAGGGCCAGGGCC
TGTTTGTGTACCCCCGTGACCACCCACGGAGGTTGCCGTGCCCACCCACG
GTACGATGTCTGTATGGGGACCATGTTAACCCAGAGGACCGATGCAGACG
ATATATATATCCTTGATTAACACACACGTGCTGTTCCAGCACGGACCGAA
GTCAGTACAGGTCCTGTTTCAGTGAACACAAGCGCGGGCTCTCACGAGGG
GGACCGCACTTGGACCCCCAACAGTATACCCCCCGCACACATGTTCTATG
CAGATCGAATCTTGTATCCAAGTACCCCAAACAGCCCCCCTGCTTGATAC
AATATACGATCTGGAAGTCCAAGGTGGATAATCTTCCTACCAATACAAAA
ACACAAATAACCACTCGAGAAACATCCTCTACAAAACTGGTTACGCATTT
TACGCAAAGCGTCTCCATCAGTATATTCATGAATCCAATGTATTCTCAAA
CCGTCAAAACAAAAGAATCATCCTCAGAAGAGTACCCAACAAATATCTGC
GCTACATCAGAAAAGCGTCAGAACGGTGACGGACAAATCTGGAAAAACAG
CTTCAAAAGAGTTGACACAACGTCCTCAAATAACACAAAGTTTCAAGTTC
TCGACCAATCAAAACGAGCATTCGGAAAGCACAAGGGCCCCAACCATTAC
TCGTCAAAACATGTCAAACCCTTCCTCCAATGTAGCATCCAAAGACCAAA
CCCTTTAACAGCGTGCACATGCTATCGGTGCCTCAGCTGTTGTCCAAGAG
ACGATAGGAAACACACGCCAAAATCCATGCAAACAGCCCGCCTGCTGCAA
CATCTCCCGAAACATGCAAATTCTGTGCCACCCGTATCTCACTGGTTTTG
CCACAAGACAGCAATATCAATACCAATATCAACACGTAACAGCCCCCCAG
CTGGAATATTTCCCCGAAACATACAGATAAATCTGCCTGCGCTTTCTTCC
CTCCCTTTCCAACCAACAGAGGATCTCAAAACATCAAAGCGTACGAAACA
GCCCCTAAGCTGAAACATGCCCTGCATACATATGAAAAACACATAGCATT
CGCTAGTGTTGCGTCTGGAATCATGGCAACATATTTCCTCCCCCCCTGAT
TCTTGACCCAAAACACAGCAGAAGGAAGAAAACGCCAAGAAAATCACGAC
GAAACAAATCCAACTTGAACAGAACTCGACGAAAGCACTCTGCTCTGCTG
GTACTGCGGCTAGAAACATGGTACACGAATCCCCCCCGCATGGTTCTTGA
CAGCAGCACAAACAGCAGTTCGACATTTGTCATTGAATTTCGCATCTTAC
ACAAATTCGGGTTCGAAACACAACAAGTCAAAACCCAGAAACAAAAATTA
CTCAACCACAAACAGGGATGCCGTACACGTTAACGCATTGTCTCTCGGAT
GCGATTCCTGGATGAATTTATCGTCTTCGGCGCAACGGGAAGAAACCCGA
CATGGAACAACAAAAAATAAAAACCACAAAGAACATAACAACGTGAAGTC
AACATGCCAATACCTCCACACAAAACCCAAACAATTCGTTAATATTTCAC
ATGGTCTCCAATTTGGCGCAAATATGGTGAGGTCGTTGGTGCCACCATAT
TCTCGCCCTGCTCGGTCGATTCGAGGGTGTCCACCGGAGCCATATATCCG
TCTTCCGCTTCGCCTTTACTCCCCAAATTACGCTGCGCCCGCCCCGCGGT
AGCTT
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Coding sequence (CDS) from alignment at Scaffold_373:63488..66042-

>EsuBft3820_2a-0001 ID=EsuBft3820_2a-0001|Name=EsuBft3820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=471bp|location=Sequence derived from alignment at Scaffold_373:63488..66042- (Ectocarpus subulatus male Bft15b)
ATGAGATCGGACAACAACTGTGAGTACCCGAAGCCAGGAGCAACGAACTT
GCTCCCTCCCTCTTTTATTTCTCTGTTCCTCCATAACAATGGTCGACTCC
ACCGGCAAGTTGTCTCGTGTGAACCAGGATGCGGTGAAACTTTGCTGGAA
CGGGATGCAAAAGCGCACGCGGCATACCGACGTGTTTTGCGTGTCGTGAC
GTGTTGGATGGCTGCATGCGGGAAGCGCATGCCGGCGAAGGGTGTTTCAA
GGCATCTAGACGAAGACTGCGTCGCGCACCGAGCCTGGATGCGCATGGCT
GAAGCCGGACACGAACTCCAAGAGAGTTGCACGTGCCCTCACTGCGGGGA
AACTGTGCGGCGCTCCCAGCTGACGCTACACTTCCAGTACCAGTGTCATT
GGTTCAAGGAGCAGCGCCGCAAAGCCGGTTGCGGTGCCTGGGTTCCGCGG
CAATGTCGAGCAGAACAGTAG
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