EsuBft3799_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3799_2a-0001
Unique Name	EsuBft3799_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_417	contig	Scaffold_417:110944..113510 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft3799_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	223
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3799_2a	EsuBft3799_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_417 110944..113510 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3799_2a-0001	EsuBft3799_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_417 111071..111337 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3799_2a-0001-exon	EsuBft3799_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 110944..112160 +
EsuBft3799_2a-0001-exon	agat-exon-68221	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 112490..113510 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3799_2a-0001-exon	agat-five_prime_utr-9145	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_417 110944..111070 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3799_2a-0001-cds	EsuBft3799_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_417 111071..111337 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3799_2a-0001-exon	agat-three_prime_utr-14446	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_417 111338..112160 +
EsuBft3799_2a-0001-exon	agat-three_prime_utr-14447	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_417 112490..113510 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_417:110944..113510+
coding sequence from alignment at Scaffold_417:110944..113510+

spliced messenger RNA

>EsuBft3799_2a-0001 ID=EsuBft3799_2a-0001|Name=EsuBft3799_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2238bp|location=Sequence derived from alignment at Scaffold_417:110944..113510+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCTCCTGGCGCCATCTGATTGGCCGACGCCCGCCCCTACCCGGCCCTGA
CCCTATTCCCACCGGGTGCACTCGGTTTTGGCTACTCACCCCCCGGAGGG
GTACCCGATCTTACTCTCGCCTAGAAAATGGCTGGGCTATTCGACCAACA
GACCACCAGCAGACCACGCTCACGAACACACGTCACCAACACCCCGCACT
CGATCCTGACGACCCGGCTTGGACACCGGGGCTATGCTGCAGCAGAGAGC
ACGGGGAGGGTGGCGGAGTGGCCGCACGCCGTGGGGGTATGCCCCAGAGA
GACGAAAGGAGAGATTCGAGAGATGGAGGGCCACACCGCTCCGGGACAAG
AAGACAACTCTAGACTATGGGAAACAAGGCAAGAACCGGGGTAAATATCA
CGTTAGCCCGAGTGTTCGCAAGAAAATAGTAAAAAACCAAAAAAAGAGGG
GAAGATAGAGGAAAAAGAGGGGTCGGGCGGCGCGTAGGCTAGCTAAGAAA
GCAGCGCGCGCCGCGCGAAAGAGACAGCAGGGTCAACTTCTTAGGGTAGC
AACCTGGAATGTCGGGACTTTGGCTGTAAACGGGGTCAATGGATACGGGC
GAGCTTACAGCGTTCTACACGAGGGAGCGAGACAAGACGTATCGGTGGTA
GGAATGCAGGAGACACGGAGGGCAGGTCGAACGGAATTTGCAGCAGCGGG
TTTCCGGGTGTTCTGCTGTGGCACGGAGACTGGTGGAGTCCATGGTGTGG
GGATAGCCGTCAAAGATTCACTGTGCAAGACATCCACGTTCACTACGGAG
TTCATCGACGAAAGCATTATGGCCATGAGGTTTCTGTTGGCAGGCCACCG
TGGAGCGGTCAACTTCGTAGCCGCGTAGACTATGCTCCAACCGAACCTTC
AACCGCCGACAGCAAGCGCGTGTTCTGGGGAAAACTTGACAGTCTCGTGC
GTAGGACCCCTTCCAAAGAATGTGTGTATGTCCTACTGGACGCCAACGCG
CGGACGGGAGATAGGTTGGACGGAGGGGACGGAAGGATAATAGGACTGTA
CGGGCGTGATGAGCTCAACGACAATGGCATGATACTGTTGAACTTCGCAA
CGGAAAATAGGCTAGCTCTCACGAACACGTATTTGAGACACGCAAGGGCG
GAATATGGCACACAAACAACGGTGTGTCGGGAAACGATTGCAAGCGCCTT
GACTACATCCTGACAAGGTAGGCACATCACGGCCGAGTATCTAACGTGGT
CGTCATCCCCCAGCCGGTTCGCCCAGTCAAAGCAGACTCAGACCGCAATA
TGGTAGTAGTCACTGTCAACCTCGGTGGCAGGCTTGCCCACAACCGTGCA
GTCCGGACTAAACCGAAACAGAAGCAATTCAACCGACGGGAATTGCAGTT
CGAAGCAGCACGGTGTGCGGTGACTAATCGGTTCCTCCTCAACTTCGACA
CACGACTGGACGAACGAACAACCACCGCCGCGGAAGTGGCGACCGACTTT
ACCAATGCTCTCCTCGACGCAGCGCGGACGACCCTGGGGGAGGAACCGCG
GAGACGCCGCACGCAGGAGTGGTGTGAGAACCCAGAGACGCGAGTAGCGC
TGGAGCAGGCCCTTACCAAACGTCGGGAAGCGCGCCGGGCGATGAGGGGC
AACTGGAACTCAGCGACGTGGAGGGTTCTCAAAGCAGCGTGTAAGGGAGT
GGCTACAGCAGTCGAAACGGGCATTTATGCCCACCTGGACGGATAAGTGA
CTGAGCTCGAAGAAATCTACAAAGGTCGCGACAAACGAGGACTGTACCAA
CACCTCAAGAGATCATCAGTGGGCCTCAGCAGGAGACAAGCCGGGGGACA
GCAGTTCGTCGCGGATGAGAACAGCGTGTTGCTCCGGAACAGGGACGACA
TGCTCCAGCGGTGGGCGAGATTATTCAGCACCCTACTCAACACCAAATCC
CCCACCCTGAACCCACACATAATCGAACGAGTGACGCAGCGGCCAGCGAC
ACGTGACACTCAACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

protein sequence of EsuBft3799_2a-0001

>EsuBft3799_2 ID=EsuBft3799_2|Name=EsuBft3799_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=88bp
MAGLFDQQTTSRPRSRTHVTNTPHSILTTRLGHRGYAAAESTGRVAEWPH
AVGVCPRETKGEIREMEGHTAPGQEDNSRLWETRQEPG

mRNA from alignment at Scaffold_417:110944..113510+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3799_2a-0001 ID=EsuBft3799_2a-0001|Name=EsuBft3799_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2567bp|location=Sequence derived from alignment at Scaffold_417:110944..113510+ (Ectocarpus subulatus male Bft15b)
CCCTCCTGGCGCCATCTGATTGGCCGACGCCCGCCCCTACCCGGCCCTGA
CCCTATTCCCACCGGGTGCACTCGGTTTTGGCTACTCACCCCCCGGAGGG
GTACCCGATCTTACTCTCGCCTAGAAAATGGCTGGGCTATTCGACCAACA
GACCACCAGCAGACCACGCTCACGAACACACGTCACCAACACCCCGCACT
CGATCCTGACGACCCGGCTTGGACACCGGGGCTATGCTGCAGCAGAGAGC
ACGGGGAGGGTGGCGGAGTGGCCGCACGCCGTGGGGGTATGCCCCAGAGA
GACGAAAGGAGAGATTCGAGAGATGGAGGGCCACACCGCTCCGGGACAAG
AAGACAACTCTAGACTATGGGAAACAAGGCAAGAACCGGGGTAAATATCA
CGTTAGCCCGAGTGTTCGCAAGAAAATAGTAAAAAACCAAAAAAAGAGGG
GAAGATAGAGGAAAAAGAGGGGTCGGGCGGCGCGTAGGCTAGCTAAGAAA
GCAGCGCGCGCCGCGCGAAAGAGACAGCAGGGTCAACTTCTTAGGGTAGC
AACCTGGAATGTCGGGACTTTGGCTGTAAACGGGGTCAATGGATACGGGC
GAGCTTACAGCGTTCTACACGAGGGAGCGAGACAAGACGTATCGGTGGTA
GGAATGCAGGAGACACGGAGGGCAGGTCGAACGGAATTTGCAGCAGCGGG
TTTCCGGGTGTTCTGCTGTGGCACGGAGACTGGTGGAGTCCATGGTGTGG
GGATAGCCGTCAAAGATTCACTGTGCAAGACATCCACGTTCACTACGGAG
TTCATCGACGAAAGCATTATGGCCATGAGGTTTCTGTTGGCAGGCCACCG
TGGAGCGGTCAACTTCGTAGCCGCGTAGACTATGCTCCAACCGAACCTTC
AACCGCCGACAGCAAGCGCGTGTTCTGGGGAAAACTTGACAGTCTCGTGC
GTAGGACCCCTTCCAAAGAATGTGTGTATGTCCTACTGGACGCCAACGCG
CGGACGGGAGATAGGTTGGACGGAGGGGACGGAAGGATAATAGGACTGTA
CGGGCGTGATGAGCTCAACGACAATGGCATGATACTGTTGAACTTCGCAA
CGGAAAATAGGCTAGCTCTCACGAACACGTATTTGAGACACGCAAGGGCG
GAATATGGCACACAAACAACGGTGTGTCGGGAAACGATTGCAAGCGCCTT
GACTACATCCTGACAAGGTAGGCACATCACGGCCGAGTATCTAACGTGGT
CGTCATCCCCCAGCCGGTTCGCCCAGTCAAAGCAGACTCAGACCGCAATA
TGGTAGTAGTCACTGTCAACCTCGGTGGCAGGCTTGCCCACAACCGTGCA
GTCCGGACTAAACCNATAATAGGACTGTACGGGCGTGATGAGCTCAACGA
CAATGGCATGATACTGTTGAACTTCGCAACGGAAAATAGGCTAGCTCTCA
CGAACACGTATTTGAGACACGCAAGGGCGGAATATGGCACACAAACAACG
GTGTGTCGGGAAACGATTGCAAGCGCCTTGACTACATCCTGACAAGGTAG
GCACATCACGGCCGAGTATCTAACGTGGTCGTCATCCCCCAGCCGGTTCG
CCCAGTCAAAGCAGACTCAGACCGCAATATGGTAGTAGTCACTGTCAACC
TCGGTGGCAGGCTTGCCCACAACCGTGCAGTCCGGACTAAACCGAAACAG
AAGCAATTCAACCGACGGGAATTGCAGTTCGAAGCAGCACGGTGTGCGGT
GACTAATCGGTTCCTCCTCAACTTCGACACACGACTGGACGAACGAACAA
CCACCGCCGCGGAAGTGGCGACCGACTTTACCAATGCTCTCCTCGACGCA
GCGCGGACGACCCTGGGGGAGGAACCGCGGAGACGCCGCACGCAGGAGTG
GTGTGAGAACCCAGAGACGCGAGTAGCGCTGGAGCAGGCCCTTACCAAAC
GTCGGGAAGCGCGCCGGGCGATGAGGGGCAACTGGAACTCAGCGACGTGG
AGGGTTCTCAAAGCAGCGTGTAAGGGAGTGGCTACAGCAGTCGAAACGGG
CATTTATGCCCACCTGGACGGATAAGTGACTGAGCTCGAAGAAATCTACA
AAGGTCGCGACAAACGAGGACTGTACCAACACCTCAAGAGATCATCAGTG
GGCCTCAGCAGGAGACAAGCCGGGGGACAGCAGTTCGTCGCGGATGAGAA
CAGCGTGTTGCTCCGGAACAGGGACGACATGCTCCAGCGGTGGGCGAGAT
TATTCAGCACCCTACTCAACACCAAATCCCCCACCCTGAACCCACACATA
ATCGAACGAGTGACGCAGCGGCCAGCGACACGTGACACTCAACGGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_417:110944..113510+

>EsuBft3799_2a-0001 ID=EsuBft3799_2a-0001|Name=EsuBft3799_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=267bp|location=Sequence derived from alignment at Scaffold_417:110944..113510+ (Ectocarpus subulatus male Bft15b)
ATGGCTGGGCTATTCGACCAACAGACCACCAGCAGACCACGCTCACGAAC
ACACGTCACCAACACCCCGCACTCGATCCTGACGACCCGGCTTGGACACC
GGGGCTATGCTGCAGCAGAGAGCACGGGGAGGGTGGCGGAGTGGCCGCAC
GCCGTGGGGGTATGCCCCAGAGAGACGAAAGGAGAGATTCGAGAGATGGA
GGGCCACACCGCTCCGGGACAAGAAGACAACTCTAGACTATGGGAAACAA
GGCAAGAACCGGGGTAA