EsuBft3771_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3771_2a-0001
Unique NameEsuBft3771_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:26788..28092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3771_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length89
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3771_2aEsuBft3771_2aEctocarpus subulatus male Bft15bgeneScaffold_195 26788..28092 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3771_2a-0001-exonEsuBft3771_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 26788..26975 +
EsuBft3771_2a-0001-exonagat-exon-40106Ectocarpus subulatus male Bft15bexonScaffold_195 27384..28092 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3771_2a-0001-exonagat-five_prime_utr-9127Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_195 26788..26871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3771_2a-0001-cdsEsuBft3771_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 26872..26975 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3771_2a-0001-exonagat-three_prime_utr-14398Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_195 27391..28092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3771_2a-0001EsuBft3771_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 26872..27390 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3771_2a-0001 ID=EsuBft3771_2a-0001|Name=EsuBft3771_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=897bp|location=Sequence derived from alignment at Scaffold_195:26788..28092+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCGCTAACAGGCTGACCAATTAAAAGACGTCAGTGCCAGCGGGTAAAAA
TCAAGGTCCCTGGAAGGGGGCCGAAATTCGAAAAATGCGCAATGCGCTTG
ATGCGAATGCCAATACGACTCTCTCTACATGTTCTTTCACGAAGACACAC
ATCTCAGCTACACAAATGCCCTCGCTCGAATCTAGGAACCACTGATGCAA
AGAGCGGAGGACAGCAAAAGGGTTATTTCAAGCCCAGCCAAAGCCAGGAT
ATCGTGTTATGCTGCATCATCTCCCAATTTGATAGTCGTACACTCCCAAG
ATCCAACAATCATCGTGTCAGCAGCTAGATGGCTCAAACAAAATAGCAAC
ACATACACTGCCATAACTCCACACATGCCCTCGCCCGAATCTAGGAAGCC
ACTGATGCAAAGAGCGGAGGACAACAAAAGGTTTCAAGCCCAGCCGAAGC
CAGGATATCGTGGTATGCTGCATCATCTCCCAATCAATTTGATAATCTTA
CACTCCCAAAATCCAACACAGTCATCGTGTCAGCAGCTAGATGACTCAAA
CAAAATAGCAACACATACACTGCCATAGCTCCACACATGCCCTCTTCCGA
ACCTAGCAAGCCACGAGGAAGTCATGAGGGAGCCAAGCCCTGCTCGCAGG
TTCTCTTGGCTTTCCTTCAGGTGAACACGTCCAGGAATCCAGTATCCGCA
GCCGCCGCAGTAGTACTACTTACTGTACTCTGTGTAGTCTACTAGTAGCA
GGAAATCCAGGTTGTACCCACCCGTTGTCCAAACAAAGATTTGTGATTCC
GTGAGAGAAGGAGATACCACCGCCGTCGAAGGGTCGAAGGCACTGTCTGC
CAGATGTAGGCTGTGAGATAGATGGTGCCACCTATGTGTCCTCAGCT
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protein sequence of EsuBft3771_2a-0001

>EsuBft3771_2 ID=EsuBft3771_2|Name=EsuBft3771_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=36bp
MRNALDANANTTLSTCSFTKTHISATQMPSLESRNH
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mRNA from alignment at Scaffold_195:26788..28092+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3771_2a-0001 ID=EsuBft3771_2a-0001|Name=EsuBft3771_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1305bp|location=Sequence derived from alignment at Scaffold_195:26788..28092+ (Ectocarpus subulatus male Bft15b)
CGCGCTAACAGGCTGACCAATTAAAAGACGTCAGTGCCAGCGGGTAAAAA
TCAAGGTCCCTGGAAGGGGGCCGAAATTCGAAAAATGCGCAATGCGCTTG
ATGCGAATGCCAATACGACTCTCTCTACATGTTCTTTCACGAAGACACAC
ATCTCAGCTACACAAATGCCCTCGCTCGAATCTAGGAAGTCACTGATGCA
AAGAGCGGAGGACAGAGCAAAATGGTTATTTCAAGCCCAGGATATCGTGG
TATGCTGCATCTCCCAATTTGATAATCGTGCGCTCCCAAGTGTCAGCAGC
TAGGTCACTCAAACAAAGTAGCAACACATACACGGCCATAGCTCCACACA
TGCCCTCGCCCGAACCTAGGAAGCCACTCACTGATGCAAAGAACGGAGGA
CAGCAAAAGGGTTATTTCAAGCCCAGCCGAACCCAGGATATCGTGGTATG
TATGTATGTATGCTGCATCTCCCAATTTGATAATCGTACACTCCCAAGAT
CCAACAGTCATAGTGTCAGCAGCTAGATGGCTCAGACAAAATAGCAACAC
ATACACTGCCATAGCTCCACACATGCCCTCGCCCGAATCTGGGAAGCCAC
TGATGCAAAGAGCGGAGGACAGCAAAAGGGTTATTTCAAGCCCAGCCAAA
GCCAGGATATCGTGTTATGCTGCATCATCTCCCAATTTGATAGTCGTACA
CTCCCAAGATCCAACAATCATCGTGTCAGCAGCTAGATGGCTCAAACAAA
ATAGCAACACATACACTGCCATAACTCCACACATGCCCTCGCCCGAATCT
AGGAAGCCACTGATGCAAAGAGCGGAGGACAACAAAAGGTTTCAAGCCCA
GCCGAAGCCAGGATATCGTGGTATGCTGCATCATCTCCCAATCAATTTGA
TAATCTTACACTCCCAAAATCCAACACAGTCATCGTGTCAGCAGCTAGAT
GACTCAAACAAAATAGCAACACATACACTGCCATAGCTCCACACATGCCC
TCTTCCGAACCTAGCAAGCCACGAGGAAGTCATGAGGGAGCCAAGCCCTG
CTCGCAGGTTCTCTTGGCTTTCCTTCAGGTGAACACGTCCAGGAATCCAG
TATCCGCAGCCGCCGCAGTAGTACTACTTACTGTACTCTGTGTAGTCTAC
TAGTAGCAGGAAATCCAGGTTGTACCCACCCGTTGTCCAAACAAAGATTT
GTGATTCCGTGAGAGAAGGAGATACCACCGCCGTCGAAGGGTCGAAGGCA
CTGTCTGCCAGATGTAGGCTGTGAGATAGATGGTGCCACCTATGTGTCCT
CAGCT
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Coding sequence (CDS) from alignment at Scaffold_195:26788..28092+

>EsuBft3771_2a-0001 ID=EsuBft3771_2a-0001|Name=EsuBft3771_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=111bp|location=Sequence derived from alignment at Scaffold_195:26788..28092+ (Ectocarpus subulatus male Bft15b)
ATGCGCAATGCGCTTGATGCGAATGCCAATACGACTCTCTCTACATGTTC
TTTCACGAAGACACACATCTCAGCTACACAAATGCCCTCGCTCGAATCTA
GGAACCACTGA
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